Wall clock time and date at job start Tue Mar 31 2020 06:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.62937 * 2 1 4 4 S 1.81990 * 109.46007 * 239.47894 * 2 1 3 5 5 C 1.81896 * 101.87890 * 291.34167 * 4 2 1 6 6 C 1.53247 * 108.67019 * 308.95970 * 5 4 2 7 7 N 1.46467 * 109.86486 * 61.90213 * 6 5 4 8 8 C 1.46897 * 111.00242 * 162.23356 * 7 6 5 9 9 C 1.53001 * 109.47053 * 293.95493 * 8 7 6 10 10 C 1.50707 * 109.46818 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99814 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99589 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00138 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99647 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47049 * 60.00246 * 14 12 10 16 16 H 1.48498 * 109.46777 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47072 * 300.00144 * 14 12 10 18 18 C 1.46473 * 112.55908 * 287.34629 * 7 6 5 19 19 H 1.09006 * 109.40338 * 312.61559 * 18 7 6 20 20 C 1.50697 * 109.40514 * 192.77185 * 18 7 6 21 21 C 1.38233 * 119.99927 * 319.72495 * 20 18 7 22 22 C 1.38238 * 119.99903 * 179.80761 * 21 20 18 23 23 C 1.38238 * 119.99987 * 0.40078 * 22 21 20 24 24 C 1.38244 * 119.99844 * 359.85338 * 23 22 21 25 25 C 1.38235 * 119.99751 * 139.99779 * 20 18 7 26 26 H 1.09002 * 109.47222 * 299.60857 * 1 2 3 27 27 H 1.08994 * 109.47205 * 59.61090 * 1 2 3 28 28 H 1.08996 * 109.46829 * 179.61291 * 1 2 3 29 29 H 1.09002 * 109.63170 * 189.15212 * 5 4 2 30 30 H 1.08995 * 109.62947 * 68.76151 * 5 4 2 31 31 H 1.09001 * 109.40522 * 182.02352 * 6 5 4 32 32 H 1.09003 * 109.40742 * 301.78365 * 6 5 4 33 33 H 1.08999 * 109.47244 * 53.95467 * 8 7 6 34 34 H 1.08997 * 109.46853 * 173.95727 * 8 7 6 35 35 H 1.08996 * 109.47487 * 299.99779 * 9 8 7 36 36 H 1.08997 * 109.47100 * 60.00386 * 9 8 7 37 37 H 0.97002 * 119.99726 * 179.97438 * 13 12 10 38 38 H 1.07999 * 120.00217 * 359.97438 * 21 20 18 39 39 H 1.07993 * 120.00445 * 180.23049 * 22 21 20 40 40 H 1.07998 * 120.00384 * 179.82781 * 23 22 21 41 41 H 1.07993 * 119.99797 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.00193 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 16 2.1363 -0.8714 -1.4782 5 6 1.6503 -2.5886 -1.1262 6 6 2.1485 -2.9623 0.2740 7 7 1.5188 -2.0968 1.2738 8 6 1.6325 -2.6766 2.6187 9 6 0.8147 -3.9679 2.6881 10 6 0.9319 -4.5630 4.0677 11 1 1.5295 -4.0695 4.8197 12 6 0.2761 -5.7377 4.3696 13 7 -0.4512 -6.3390 3.4536 14 14 0.4219 -6.4758 6.0794 15 1 -0.0941 -5.5091 7.0815 16 1 -0.3709 -7.7297 6.1465 17 1 1.8472 -6.7759 6.3691 18 6 2.0449 -0.7301 1.2452 19 1 3.1342 -0.7618 1.2205 20 6 1.5932 0.0062 2.4800 21 6 0.3066 -0.1658 2.9554 22 6 -0.1065 0.5066 4.0904 23 6 0.7643 1.3573 4.7453 24 6 2.0493 1.5334 4.2668 25 6 2.4636 0.8580 3.1340 26 1 -0.3634 0.5077 0.8935 27 1 -0.3633 0.5198 -0.8864 28 1 -0.3633 -1.0276 -0.0069 29 1 2.0978 -3.2544 -1.8641 30 1 0.5646 -2.6769 -1.1642 31 1 1.8948 -4.0015 0.4833 32 1 3.2306 -2.8389 0.3183 33 1 2.6784 -2.8971 2.8321 34 1 1.2535 -1.9666 3.3537 35 1 -0.2312 -3.7475 2.4748 36 1 1.1937 -4.6779 1.9531 37 1 -0.9123 -7.1656 3.6660 38 1 -0.3750 -0.8275 2.4417 39 1 -1.1104 0.3694 4.4640 40 1 0.4408 1.8848 5.6304 41 1 2.7295 2.1983 4.7781 42 1 3.4675 0.9954 2.7603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118422166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:48 Heat of formation + Delta-G solvation = 30.154466 kcal Electronic energy + Delta-G solvation = -21863.027310 eV Core-core repulsion = 18933.931816 eV Total energy + Delta-G solvation = -2929.095494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -40.02183 -37.50559 -34.02661 -32.86387 -31.54780 -30.87443 -29.93118 -28.69649 -26.01098 -23.95371 -23.21910 -22.17216 -21.84912 -20.44081 -19.44874 -17.12633 -16.30172 -16.14906 -15.50558 -15.18725 -14.92230 -14.55103 -14.38134 -14.00806 -13.90977 -13.56425 -13.17054 -12.91857 -12.58031 -12.27218 -12.18136 -11.91708 -11.82789 -11.71162 -11.32003 -11.12403 -10.99673 -10.91797 -10.76739 -10.61811 -10.49040 -9.85440 -9.61790 -9.34248 -9.17577 -8.67908 -8.45075 -8.31199 -7.87513 -7.54116 -6.03050 -4.05150 1.47560 1.60331 1.95039 2.63387 3.31098 3.35706 3.38140 3.92677 4.13656 4.45825 4.86144 4.92448 5.02714 5.11525 5.17101 5.23256 5.32089 5.33021 5.38132 5.43415 5.54675 5.69003 5.70088 5.85857 5.94769 6.03279 6.05327 6.12117 6.14241 6.25644 6.32089 6.46929 6.48495 6.61708 6.72240 6.78212 6.95044 7.18112 7.35286 7.47998 7.73472 7.83308 8.02265 8.39862 9.01394 9.58735 11.08131 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013041 B = 0.006056 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.486216 B = 4622.383017 C = 6210.075480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.028 4.028 3 H 0.103 0.897 4 S -0.289 6.289 5 C -0.068 4.068 6 C 0.054 3.946 7 N -0.540 5.540 8 C 0.055 3.945 9 C 0.032 3.968 10 C -0.521 4.521 11 H 0.052 0.948 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.129 3.871 19 H 0.054 0.946 20 C -0.075 4.075 21 C -0.081 4.081 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.116 4.116 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.018 0.982 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.015 0.985 37 H 0.261 0.739 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.308 14.418 -4.897 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 H 0.121 0.879 4 S -0.061 6.061 5 C -0.217 4.217 6 C -0.075 4.075 7 N -0.265 5.265 8 C -0.070 4.070 9 C -0.005 4.005 10 C -0.560 4.560 11 H 0.071 0.929 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.019 3.981 19 H 0.072 0.928 20 C -0.077 4.077 21 C -0.099 4.099 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.135 4.135 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.267 14.683 -6.008 16.197 hybrid contribution 0.365 -1.060 2.190 2.460 sum 3.632 13.623 -3.818 14.606 Atomic orbital electron populations 1.22069 0.92440 1.03812 1.01708 1.23191 0.99882 1.00039 0.92597 0.87900 1.86675 1.79343 1.08481 1.31558 1.23536 1.04939 0.93233 0.99950 1.22267 0.96306 0.99325 0.89642 1.61292 1.57455 1.00106 1.07624 1.22584 0.98793 0.99179 0.86463 1.19081 0.95362 0.89576 0.96494 1.21121 1.29948 1.07574 0.97344 0.92946 1.24960 0.95235 0.96967 0.96942 1.69951 1.31603 1.18291 1.33373 0.86688 0.78103 0.78516 0.84889 1.20221 1.21260 1.20310 1.20660 0.96802 0.89538 0.91074 0.92839 1.19649 0.94528 0.97400 0.96161 1.21212 0.95688 0.97384 0.95611 1.21197 0.99987 0.97140 0.95971 1.21114 0.94080 0.98963 0.99725 1.20995 0.96284 1.00463 0.96790 1.20953 0.99115 0.97374 0.96055 0.91465 0.92655 0.90624 0.87990 0.88905 0.87976 0.94221 0.96342 0.90282 0.95832 0.96651 0.92942 0.84553 0.86068 0.86525 0.86499 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.01 37.16 0.30 -1.55 16 2 C -0.03 -0.37 2.98 -26.60 -0.08 -0.45 16 3 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 4 S -0.29 -4.01 21.81 -107.50 -2.35 -6.36 16 5 C -0.07 -0.95 6.32 37.29 0.24 -0.71 16 6 C 0.05 0.86 5.29 -3.93 -0.02 0.84 16 7 N -0.54 -9.09 2.99 -228.43 -0.68 -9.78 16 8 C 0.06 1.13 4.22 -3.83 -0.02 1.11 16 9 C 0.03 0.80 4.94 -27.88 -0.14 0.66 16 10 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 11 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 14 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.13 1.91 1.86 -68.97 -0.13 1.78 16 19 H 0.05 0.82 7.77 -51.93 -0.40 0.42 16 20 C -0.08 -1.09 3.44 -104.63 -0.36 -1.45 16 21 C -0.08 -1.21 5.02 -39.58 -0.20 -1.41 16 22 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 24 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 25 C -0.12 -1.53 9.67 -39.58 -0.38 -1.91 16 26 H 0.07 0.86 5.61 -51.93 -0.29 0.57 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.11 6.68 -51.93 -0.35 0.76 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.33 7.55 -51.93 -0.39 0.94 16 31 H 0.10 1.83 5.89 -51.93 -0.31 1.52 16 32 H 0.04 0.63 7.91 -51.93 -0.41 0.22 16 33 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.08 1.62 4.61 -51.93 -0.24 1.38 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.40 6.26 -51.93 -0.33 0.08 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.14 2.22 6.75 -52.49 -0.35 1.86 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.12 1.34 8.04 -52.49 -0.42 0.92 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -28.84 333.39 -11.10 -39.94 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.41 Total: 2.50 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -2.39 Total: -22.22 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.05 Total: -35.33 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.35 Total: -6.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.84 -11.10 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118422166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.095 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds