Wall clock time and date at job start Tue Mar 31 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.62937 * 2 1 4 4 S 1.81990 * 109.46007 * 239.47894 * 2 1 3 5 5 C 1.81896 * 101.87890 * 291.34167 * 4 2 1 6 6 C 1.53247 * 108.67019 * 308.95970 * 5 4 2 7 7 N 1.46467 * 109.86486 * 61.90213 * 6 5 4 8 8 C 1.46897 * 111.00242 * 162.23356 * 7 6 5 9 9 C 1.53001 * 109.47053 * 293.95493 * 8 7 6 10 10 C 1.50707 * 109.46818 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99814 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99589 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00138 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99647 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47049 * 60.00246 * 14 12 10 16 16 H 1.48498 * 109.46777 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47072 * 300.00144 * 14 12 10 18 18 C 1.46473 * 112.55908 * 287.34629 * 7 6 5 19 19 H 1.09006 * 109.40338 * 312.61559 * 18 7 6 20 20 C 1.50697 * 109.40514 * 192.77185 * 18 7 6 21 21 C 1.38233 * 119.99927 * 319.72495 * 20 18 7 22 22 C 1.38238 * 119.99903 * 179.80761 * 21 20 18 23 23 C 1.38238 * 119.99987 * 0.40078 * 22 21 20 24 24 C 1.38244 * 119.99844 * 359.85338 * 23 22 21 25 25 C 1.38235 * 119.99751 * 139.99779 * 20 18 7 26 26 H 1.09002 * 109.47222 * 299.60857 * 1 2 3 27 27 H 1.08994 * 109.47205 * 59.61090 * 1 2 3 28 28 H 1.08996 * 109.46829 * 179.61291 * 1 2 3 29 29 H 1.09002 * 109.63170 * 189.15212 * 5 4 2 30 30 H 1.08995 * 109.62947 * 68.76151 * 5 4 2 31 31 H 1.09001 * 109.40522 * 182.02352 * 6 5 4 32 32 H 1.09003 * 109.40742 * 301.78365 * 6 5 4 33 33 H 1.08999 * 109.47244 * 53.95467 * 8 7 6 34 34 H 1.08997 * 109.46853 * 173.95727 * 8 7 6 35 35 H 1.08996 * 109.47487 * 299.99779 * 9 8 7 36 36 H 1.08997 * 109.47100 * 60.00386 * 9 8 7 37 37 H 0.97002 * 119.99726 * 179.97438 * 13 12 10 38 38 H 1.07999 * 120.00217 * 359.97438 * 21 20 18 39 39 H 1.07993 * 120.00445 * 180.23049 * 22 21 20 40 40 H 1.07998 * 120.00384 * 179.82781 * 23 22 21 41 41 H 1.07993 * 119.99797 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.00193 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 16 2.1363 -0.8714 -1.4782 5 6 1.6503 -2.5886 -1.1262 6 6 2.1485 -2.9623 0.2740 7 7 1.5188 -2.0968 1.2738 8 6 1.6325 -2.6766 2.6187 9 6 0.8147 -3.9679 2.6881 10 6 0.9319 -4.5630 4.0677 11 1 1.5295 -4.0695 4.8197 12 6 0.2761 -5.7377 4.3696 13 7 -0.4512 -6.3390 3.4536 14 14 0.4219 -6.4758 6.0794 15 1 -0.0941 -5.5091 7.0815 16 1 -0.3709 -7.7297 6.1465 17 1 1.8472 -6.7759 6.3691 18 6 2.0449 -0.7301 1.2452 19 1 3.1342 -0.7618 1.2205 20 6 1.5932 0.0062 2.4800 21 6 0.3066 -0.1658 2.9554 22 6 -0.1065 0.5066 4.0904 23 6 0.7643 1.3573 4.7453 24 6 2.0493 1.5334 4.2668 25 6 2.4636 0.8580 3.1340 26 1 -0.3634 0.5077 0.8935 27 1 -0.3633 0.5198 -0.8864 28 1 -0.3633 -1.0276 -0.0069 29 1 2.0978 -3.2544 -1.8641 30 1 0.5646 -2.6769 -1.1642 31 1 1.8948 -4.0015 0.4833 32 1 3.2306 -2.8389 0.3183 33 1 2.6784 -2.8971 2.8321 34 1 1.2535 -1.9666 3.3537 35 1 -0.2312 -3.7475 2.4748 36 1 1.1937 -4.6779 1.9531 37 1 -0.9123 -7.1656 3.6660 38 1 -0.3750 -0.8275 2.4417 39 1 -1.1104 0.3694 4.4640 40 1 0.4408 1.8848 5.6304 41 1 2.7295 2.1983 4.7781 42 1 3.4675 0.9954 2.7603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118422166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:46 Heat of formation + Delta-G solvation = 16.537920 kcal Electronic energy + Delta-G solvation = -21863.617768 eV Core-core repulsion = 18933.931816 eV Total energy + Delta-G solvation = -2929.685952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 7.19 seconds Orbital eigenvalues (eV) -41.19558 -38.71536 -35.69478 -34.49150 -32.98086 -31.93265 -31.26415 -30.16817 -27.46368 -25.64752 -24.51929 -23.22010 -23.04452 -22.08919 -20.70103 -18.74621 -17.87054 -17.28909 -16.76802 -16.68481 -16.25745 -15.96595 -15.73858 -15.28975 -15.22861 -14.86274 -14.27717 -14.20019 -13.94888 -13.86168 -13.49891 -13.42265 -13.17144 -12.87049 -12.85788 -12.68590 -12.47093 -12.44251 -12.08099 -11.96130 -11.79622 -11.63033 -11.29148 -11.18144 -10.65661 -10.50737 -9.71951 -9.50700 -9.27313 -8.67922 -8.20105 -6.30308 0.43220 0.56551 0.83200 1.38982 1.41101 1.49065 1.49361 2.38798 2.77645 2.94745 3.13585 3.70646 3.78845 3.87346 3.99865 4.12709 4.15610 4.23377 4.23873 4.36524 4.37344 4.50049 4.57877 4.67109 4.70118 4.80366 4.81317 4.89933 4.95453 4.97694 5.09820 5.13286 5.22660 5.37960 5.44161 5.58128 5.66577 5.68650 5.71894 5.78112 6.05153 6.15807 6.24458 6.31454 6.85608 7.38322 8.91346 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013041 B = 0.006056 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.486216 B = 4622.383017 C = 6210.075480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 H 0.120 0.880 4 S -0.282 6.282 5 C -0.063 4.063 6 C 0.056 3.944 7 N -0.542 5.542 8 C 0.078 3.922 9 C 0.044 3.956 10 C -0.542 4.542 11 H 0.053 0.947 12 C 0.007 3.993 13 N -0.928 5.928 14 Si 0.958 3.042 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.269 1.269 18 C 0.134 3.866 19 H 0.053 0.947 20 C -0.088 4.088 21 C -0.098 4.098 22 C -0.138 4.138 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.121 4.121 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.009 0.991 34 H 0.080 0.920 35 H -0.006 1.006 36 H -0.005 1.005 37 H 0.263 0.737 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 16.125 -3.940 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 H 0.138 0.862 4 S -0.054 6.054 5 C -0.212 4.212 6 C -0.074 4.074 7 N -0.266 5.266 8 C -0.049 4.049 9 C 0.007 3.993 10 C -0.580 4.580 11 H 0.072 0.928 12 C -0.191 4.191 13 N -0.568 5.568 14 Si 0.783 3.217 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.194 1.194 18 C 0.024 3.976 19 H 0.071 0.929 20 C -0.090 4.090 21 C -0.117 4.117 22 C -0.156 4.156 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.140 4.140 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.098 0.902 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.072 0.928 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.342 16.406 -5.063 17.710 hybrid contribution 0.024 -1.541 1.876 2.428 sum 4.366 14.865 -3.187 15.818 Atomic orbital electron populations 1.21978 0.92315 1.02611 1.02373 1.23216 0.99912 1.00553 0.91600 0.86177 1.86648 1.79237 1.07806 1.31669 1.23458 1.04598 0.94230 0.98867 1.22224 0.96501 0.97926 0.90712 1.61184 1.58251 1.01310 1.05888 1.22140 0.96978 0.97099 0.88662 1.18868 0.94199 0.91331 0.94945 1.21524 1.29978 1.08066 0.98455 0.92827 1.25844 0.94734 0.97413 1.01107 1.70082 1.32422 1.18744 1.35557 0.85604 0.78457 0.77769 0.79865 1.19252 1.20746 1.19402 1.20674 0.96590 0.88017 0.92330 0.92923 1.19661 0.94671 0.98282 0.96416 1.21093 0.95894 0.98109 0.96573 1.21396 1.00867 0.97517 0.95807 1.21448 0.93979 0.98263 1.00194 1.21375 0.96579 1.00078 0.96210 1.21214 0.99616 0.96888 0.96257 0.91350 0.91375 0.92749 0.86092 0.89588 0.90495 0.93811 0.97308 0.90213 0.98749 0.98673 0.92793 0.86797 0.85399 0.83955 0.83559 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.01 71.98 0.58 -2.87 16 2 C -0.02 -0.61 2.98 30.68 0.09 -0.52 16 3 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 4 S -0.28 -7.45 21.81 -56.49 -1.23 -8.69 16 5 C -0.06 -1.75 6.32 72.06 0.46 -1.29 16 6 C 0.06 1.83 5.29 86.47 0.46 2.29 16 7 N -0.54 -18.73 2.99 -876.62 -2.62 -21.35 16 8 C 0.08 3.26 4.22 86.30 0.36 3.63 16 9 C 0.04 2.29 4.94 29.85 0.15 2.44 16 10 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 11 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 12 C 0.01 0.42 5.46 84.66 0.46 0.88 16 13 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 14 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 C 0.13 3.86 1.86 44.33 0.08 3.95 16 19 H 0.05 1.55 7.77 -2.38 -0.02 1.53 16 20 C -0.09 -2.49 3.44 -19.87 -0.07 -2.56 16 21 C -0.10 -2.97 5.02 22.27 0.11 -2.86 16 22 C -0.14 -3.69 10.05 22.27 0.22 -3.47 16 23 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 24 C -0.12 -2.67 10.05 22.27 0.22 -2.45 16 25 C -0.12 -2.92 9.67 22.27 0.22 -2.71 16 26 H 0.07 1.75 5.61 -2.39 -0.01 1.73 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.63 6.68 -2.39 -0.02 1.61 16 29 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.09 2.51 7.55 -2.39 -0.02 2.49 16 31 H 0.08 2.92 5.89 -2.39 -0.01 2.91 16 32 H 0.04 1.39 7.91 -2.39 -0.02 1.37 16 33 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 34 H 0.08 3.36 4.61 -2.39 -0.01 3.35 16 35 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.00 -0.27 6.26 -2.39 -0.01 -0.29 16 37 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.11 3.90 6.75 -2.91 -0.02 3.88 16 39 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 40 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.13 2.70 8.04 -2.91 -0.02 2.68 16 Total: -1.00 -62.50 333.39 3.25 -59.25 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.99 Total: 18.83 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 3.80 Total: -38.51 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -2.34 Total: -77.02 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.23 Total: -8.69 kcal Total: -62.50 3.25 -59.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118422166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.785 kcal (2) G-P(sol) polarization free energy of solvation -62.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.19 seconds