Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46867 * 2 1 4 4 C 1.46899 * 111.00162 * 74.83243 * 3 2 1 5 5 C 1.50699 * 109.47140 * 196.12596 * 4 3 2 6 6 H 1.07999 * 119.99882 * 2.17147 * 5 4 3 7 7 C 1.37881 * 119.99913 * 182.17735 * 5 4 3 8 8 N 1.31519 * 119.99715 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00014 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46776 * 89.99880 * 9 7 5 11 11 H 1.48497 * 109.47338 * 210.00044 * 9 7 5 12 12 H 1.48500 * 109.47118 * 330.00470 * 9 7 5 13 13 C 1.37718 * 110.99941 * 198.78365 * 3 2 1 14 14 C 1.38159 * 120.64495 * 235.76985 * 13 3 2 15 15 C 1.39253 * 119.01618 * 179.73258 * 14 13 3 16 16 C 1.50709 * 119.78227 * 180.27274 * 15 14 13 17 17 O 1.42897 * 109.47064 * 0.27301 * 16 15 14 18 18 C 1.42903 * 114.00043 * 179.97438 * 17 16 15 19 19 N 1.31652 * 120.43511 * 0.54978 * 15 14 13 20 20 C 1.33788 * 121.22075 * 359.71604 * 19 15 14 21 21 N 1.32863 * 132.41242 * 180.02562 * 20 19 15 22 22 C 1.32728 * 109.74018 * 179.97438 * 21 20 19 23 23 N 1.31076 * 109.62660 * 0.02562 * 22 21 20 24 24 N 1.36510 * 120.64374 * 56.04526 * 13 3 2 25 25 H 1.09003 * 109.46801 * 174.50816 * 1 2 3 26 26 H 1.08997 * 109.47465 * 294.51101 * 1 2 3 27 27 H 1.08997 * 109.47237 * 54.51564 * 1 2 3 28 28 H 1.09006 * 109.47312 * 240.00088 * 2 1 3 29 29 H 1.08994 * 109.47301 * 119.99850 * 2 1 3 30 30 H 1.09004 * 109.46536 * 316.12349 * 4 3 2 31 31 H 1.08995 * 109.47445 * 76.12138 * 4 3 2 32 32 H 0.96998 * 119.99397 * 179.97438 * 8 7 5 33 33 H 1.08001 * 120.48898 * 359.97438 * 14 13 3 34 34 H 1.09005 * 109.46910 * 120.27778 * 16 15 14 35 35 H 1.09004 * 109.46624 * 240.27456 * 16 15 14 36 36 H 1.08998 * 109.47013 * 300.00605 * 18 17 16 37 37 H 1.09004 * 109.46706 * 60.00004 * 18 17 16 38 38 H 1.08998 * 109.47396 * 179.97438 * 18 17 16 39 39 H 1.08000 * 125.18857 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8568 2.0010 1.3236 5 6 1.9873 3.4973 1.2009 6 1 2.1377 3.9484 0.2312 7 6 1.9149 4.2903 2.3265 8 7 1.7314 3.7408 3.5072 9 14 2.0775 6.1449 2.1745 10 1 0.7344 6.7443 1.9689 11 1 2.6791 6.6926 3.4167 12 1 2.9480 6.4722 1.0168 13 6 3.3317 1.4446 -0.4140 14 6 4.2952 2.0338 0.3819 15 6 5.6127 2.0704 -0.0676 16 6 6.6787 2.7034 0.7893 17 8 6.0934 3.1807 2.0024 18 6 7.0239 3.8018 2.8916 19 7 5.9322 1.5606 -1.2386 20 6 5.0092 0.9919 -2.0225 21 7 5.0797 0.4191 -3.2193 22 6 3.8757 -0.0020 -3.5863 23 7 3.0048 0.2837 -2.6493 24 7 3.7046 0.9277 -1.6212 25 1 -0.3633 -1.0230 -0.0984 26 1 -0.3634 0.4263 0.9350 27 1 -0.3633 0.5965 -0.8368 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.8723 1.7535 1.7208 31 1 2.6258 1.6232 1.9973 32 1 1.6808 4.2986 4.2991 33 1 4.0311 2.4561 1.3402 34 1 7.4447 1.9635 1.0219 35 1 7.1300 3.5369 0.2510 36 1 7.7967 3.0844 3.1677 37 1 7.4829 4.6580 2.3972 38 1 6.5018 4.1370 3.7878 39 1 3.6482 -0.5036 -4.5154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127740106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = 112.896924 kcal Electronic energy + Delta-G solvation = -24089.014961 eV Core-core repulsion = 20649.506986 eV Total energy + Delta-G solvation = -3439.507975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.43702 -39.21655 -38.03236 -36.87108 -33.49691 -32.85924 -31.40722 -30.94646 -29.02625 -27.71837 -27.35691 -25.70386 -23.91044 -22.83463 -22.44419 -21.68411 -20.23548 -18.02958 -17.47138 -16.90994 -16.37353 -16.07209 -15.77580 -15.63207 -15.08396 -14.64791 -14.27473 -14.13593 -14.01625 -13.28512 -13.08639 -12.87780 -12.41849 -12.18268 -12.10834 -11.76902 -11.67564 -11.51600 -11.26803 -11.20762 -11.03972 -10.77340 -10.51506 -10.19694 -9.75491 -9.70697 -9.60965 -9.48535 -9.17140 -8.87990 -8.56812 -7.48707 -6.26269 -4.29511 0.92359 1.30449 2.25915 2.99288 3.21762 3.24900 3.28381 3.33683 3.79523 4.01736 4.27786 4.31813 4.54529 4.95236 5.10824 5.13958 5.26243 5.34688 5.38183 5.44115 5.48177 5.54463 5.68439 5.82397 5.85330 5.97335 6.05218 6.17024 6.27738 6.33807 6.50711 6.62355 6.70519 6.77235 7.12126 7.23770 7.38200 7.52616 7.76099 7.94880 8.00828 8.36831 8.74285 9.35634 10.83307 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.007594 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.527889 B = 3686.406149 C = 5190.804569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 N -0.470 5.470 4 C 0.185 3.815 5 C -0.522 4.522 6 H 0.063 0.937 7 C 0.071 3.929 8 N -0.888 5.888 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.413 3.587 14 C -0.244 4.244 15 C 0.240 3.760 16 C 0.115 3.885 17 O -0.370 6.370 18 C 0.035 3.965 19 N -0.506 5.506 20 C 0.469 3.531 21 N -0.551 5.551 22 C 0.239 3.761 23 N -0.346 5.346 24 N -0.336 5.336 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.209 0.791 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.091 0.909 39 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.012 -4.587 -2.241 7.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 N -0.183 5.183 4 C 0.063 3.937 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.133 4.133 8 N -0.526 5.526 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.192 3.808 14 C -0.274 4.274 15 C 0.083 3.917 16 C 0.038 3.962 17 O -0.288 6.288 18 C -0.062 4.062 19 N -0.229 5.229 20 C 0.108 3.892 21 N -0.287 5.287 22 C -0.063 4.063 23 N -0.178 5.178 24 N -0.119 5.119 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.226 0.774 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.726 -4.651 -3.089 7.998 hybrid contribution -0.172 0.927 0.642 1.140 sum 5.554 -3.725 -2.447 7.121 Atomic orbital electron populations 1.21732 0.93672 1.01256 1.03262 1.22303 0.97615 0.85803 1.01903 1.58135 1.10789 1.17150 1.32225 1.20333 0.98949 0.95346 0.79108 1.20972 1.51147 0.89825 0.94075 0.91874 1.24843 0.94422 0.99133 0.94875 1.69923 1.48479 1.35918 0.98234 0.86461 0.78412 0.84693 0.77792 1.20626 1.20923 1.19619 1.19538 0.90539 0.89125 0.81568 1.22480 0.89935 1.09790 1.05171 1.21171 0.93746 0.88223 0.88588 1.20908 0.91754 0.98190 0.85350 1.88033 1.34420 1.77671 1.28658 1.22769 0.93365 0.96198 0.93861 1.67372 1.31401 1.18297 1.05836 1.22524 0.79337 0.95157 0.92164 1.70859 1.23990 1.24452 1.09377 1.26091 0.85750 0.95654 0.98787 1.78340 1.18423 1.22796 0.98197 1.48795 1.10471 1.39353 1.13241 0.92347 0.91811 0.91673 0.89647 0.93404 0.92815 0.95502 0.92439 0.77446 0.90192 0.90046 0.94055 0.93999 0.89023 0.76062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.93 37.16 0.37 -1.85 16 2 C 0.05 0.86 5.57 -3.82 -0.02 0.84 16 3 N -0.47 -9.89 4.45 -174.08 -0.77 -10.66 16 4 C 0.19 4.27 4.12 -4.98 -0.02 4.25 16 5 C -0.52 -13.29 7.04 -34.44 -0.24 -13.53 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.89 -23.49 13.29 55.43 0.74 -22.75 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.41 8.70 6.26 -152.97 -0.96 7.74 16 14 C -0.24 -4.99 7.52 -39.23 -0.30 -5.29 16 15 C 0.24 4.39 6.81 -82.29 -0.56 3.83 16 16 C 0.12 1.67 6.48 36.01 0.23 1.90 16 17 O -0.37 -5.92 9.19 -35.23 -0.32 -6.24 16 18 C 0.03 0.40 11.01 101.05 1.11 1.52 16 19 N -0.51 -9.91 10.38 -10.18 -0.11 -10.02 16 20 C 0.47 9.66 8.99 -323.15 -2.91 6.76 16 21 N -0.55 -10.66 11.26 -15.66 -0.18 -10.83 16 22 C 0.24 3.93 12.98 -91.96 -1.19 2.74 16 23 N -0.35 -6.53 10.92 29.26 0.32 -6.21 16 24 N -0.34 -6.92 3.65 -12.98 -0.05 -6.97 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.04 6.87 -51.93 -0.36 0.68 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.53 5.82 -51.93 -0.30 1.23 16 29 H 0.05 0.81 8.01 -51.93 -0.42 0.40 16 30 H 0.05 1.29 6.55 -51.93 -0.34 0.95 16 31 H 0.03 0.65 6.54 -51.93 -0.34 0.31 16 32 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.21 4.63 4.01 -52.49 -0.21 4.42 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.22 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -30.13 325.16 -9.97 -40.09 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.89 Total: 2.74 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -4.58 Total: 10.63 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -0.05 Total: -67.45 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.32 Total: -6.24 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.13 -9.97 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127740106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.989 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds