Wall clock time and date at job start Tue Mar 31 2020 06:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46867 * 2 1 4 4 C 1.46899 * 111.00162 * 74.83243 * 3 2 1 5 5 C 1.50699 * 109.47140 * 196.12596 * 4 3 2 6 6 H 1.07999 * 119.99882 * 2.17147 * 5 4 3 7 7 C 1.37881 * 119.99913 * 182.17735 * 5 4 3 8 8 N 1.31519 * 119.99715 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00014 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46776 * 89.99880 * 9 7 5 11 11 H 1.48497 * 109.47338 * 210.00044 * 9 7 5 12 12 H 1.48500 * 109.47118 * 330.00470 * 9 7 5 13 13 C 1.37718 * 110.99941 * 198.78365 * 3 2 1 14 14 C 1.38159 * 120.64495 * 235.76985 * 13 3 2 15 15 C 1.39253 * 119.01618 * 179.73258 * 14 13 3 16 16 C 1.50709 * 119.78227 * 180.27274 * 15 14 13 17 17 O 1.42897 * 109.47064 * 0.27301 * 16 15 14 18 18 C 1.42903 * 114.00043 * 179.97438 * 17 16 15 19 19 N 1.31652 * 120.43511 * 0.54978 * 15 14 13 20 20 C 1.33788 * 121.22075 * 359.71604 * 19 15 14 21 21 N 1.32863 * 132.41242 * 180.02562 * 20 19 15 22 22 C 1.32728 * 109.74018 * 179.97438 * 21 20 19 23 23 N 1.31076 * 109.62660 * 0.02562 * 22 21 20 24 24 N 1.36510 * 120.64374 * 56.04526 * 13 3 2 25 25 H 1.09003 * 109.46801 * 174.50816 * 1 2 3 26 26 H 1.08997 * 109.47465 * 294.51101 * 1 2 3 27 27 H 1.08997 * 109.47237 * 54.51564 * 1 2 3 28 28 H 1.09006 * 109.47312 * 240.00088 * 2 1 3 29 29 H 1.08994 * 109.47301 * 119.99850 * 2 1 3 30 30 H 1.09004 * 109.46536 * 316.12349 * 4 3 2 31 31 H 1.08995 * 109.47445 * 76.12138 * 4 3 2 32 32 H 0.96998 * 119.99397 * 179.97438 * 8 7 5 33 33 H 1.08001 * 120.48898 * 359.97438 * 14 13 3 34 34 H 1.09005 * 109.46910 * 120.27778 * 16 15 14 35 35 H 1.09004 * 109.46624 * 240.27456 * 16 15 14 36 36 H 1.08998 * 109.47013 * 300.00605 * 18 17 16 37 37 H 1.09004 * 109.46706 * 60.00004 * 18 17 16 38 38 H 1.08998 * 109.47396 * 179.97438 * 18 17 16 39 39 H 1.08000 * 125.18857 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8568 2.0010 1.3236 5 6 1.9873 3.4973 1.2009 6 1 2.1377 3.9484 0.2312 7 6 1.9149 4.2903 2.3265 8 7 1.7314 3.7408 3.5072 9 14 2.0775 6.1449 2.1745 10 1 0.7344 6.7443 1.9689 11 1 2.6791 6.6926 3.4167 12 1 2.9480 6.4722 1.0168 13 6 3.3317 1.4446 -0.4140 14 6 4.2952 2.0338 0.3819 15 6 5.6127 2.0704 -0.0676 16 6 6.6787 2.7034 0.7893 17 8 6.0934 3.1807 2.0024 18 6 7.0239 3.8018 2.8916 19 7 5.9322 1.5606 -1.2386 20 6 5.0092 0.9919 -2.0225 21 7 5.0797 0.4191 -3.2193 22 6 3.8757 -0.0020 -3.5863 23 7 3.0048 0.2837 -2.6493 24 7 3.7046 0.9277 -1.6212 25 1 -0.3633 -1.0230 -0.0984 26 1 -0.3634 0.4263 0.9350 27 1 -0.3633 0.5965 -0.8368 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.8723 1.7535 1.7208 31 1 2.6258 1.6232 1.9973 32 1 1.6808 4.2986 4.2991 33 1 4.0311 2.4561 1.3402 34 1 7.4447 1.9635 1.0219 35 1 7.1300 3.5369 0.2510 36 1 7.7967 3.0844 3.1677 37 1 7.4829 4.6580 2.3972 38 1 6.5018 4.1370 3.7878 39 1 3.6482 -0.5036 -4.5154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127740106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:47 Heat of formation + Delta-G solvation = 96.713185 kcal Electronic energy + Delta-G solvation = -24089.716740 eV Core-core repulsion = 20649.506986 eV Total energy + Delta-G solvation = -3440.209755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.91912 -40.71896 -39.37183 -38.18776 -35.20290 -34.55169 -32.87672 -32.38781 -30.53547 -29.17743 -28.90232 -26.76620 -25.60915 -24.40350 -23.88304 -23.07331 -21.81147 -19.50683 -18.93364 -18.74984 -17.86064 -17.59032 -16.93423 -16.77895 -16.74588 -16.09599 -15.78943 -15.57782 -15.52929 -14.73975 -14.48205 -14.25023 -14.03292 -13.71496 -13.43779 -13.24692 -13.06365 -12.95046 -12.77824 -12.74271 -12.50253 -12.21804 -12.19142 -11.95153 -11.48952 -11.21594 -11.00785 -10.89225 -10.72922 -10.48286 -10.30258 -9.07207 -8.24075 -6.32508 -0.57034 -0.20660 0.74306 1.41021 1.43235 1.52825 1.59476 1.95327 2.29263 2.38260 2.56126 3.08735 3.11804 3.14290 3.57863 3.82741 3.96191 4.07823 4.11395 4.28672 4.38050 4.41856 4.53571 4.55299 4.67153 4.67577 4.69835 4.85290 4.93694 4.96984 4.99585 5.03563 5.18903 5.35925 5.43853 5.58430 5.83717 5.87441 6.11719 6.21114 6.47586 6.72598 6.91412 7.35127 8.85674 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.007594 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.527889 B = 3686.406149 C = 5190.804569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.047 3.953 3 N -0.480 5.480 4 C 0.204 3.796 5 C -0.528 4.528 6 H 0.044 0.956 7 C 0.035 3.965 8 N -0.911 5.911 9 Si 0.951 3.049 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.275 1.275 13 C 0.399 3.601 14 C -0.256 4.256 15 C 0.245 3.755 16 C 0.118 3.882 17 O -0.406 6.406 18 C 0.028 3.972 19 N -0.510 5.510 20 C 0.450 3.550 21 N -0.564 5.564 22 C 0.252 3.748 23 N -0.364 5.364 24 N -0.344 5.344 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.014 0.986 32 H 0.269 0.731 33 H 0.189 0.811 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.881 -4.719 -2.995 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.077 4.077 3 N -0.193 5.193 4 C 0.081 3.919 5 C -0.566 4.566 6 H 0.063 0.937 7 C -0.167 4.167 8 N -0.550 5.550 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.200 1.200 13 C 0.178 3.822 14 C -0.285 4.285 15 C 0.088 3.912 16 C 0.041 3.959 17 O -0.325 6.325 18 C -0.068 4.068 19 N -0.233 5.233 20 C 0.090 3.910 21 N -0.300 5.300 22 C -0.048 4.048 23 N -0.195 5.195 24 N -0.127 5.127 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.206 0.794 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 6.591 -4.795 -3.852 9.015 hybrid contribution -0.395 0.907 0.813 1.280 sum 6.196 -3.888 -3.039 7.921 Atomic orbital electron populations 1.21690 0.92039 1.03091 1.02245 1.22428 0.98916 0.84271 1.02062 1.58153 1.11380 1.18852 1.30950 1.19938 0.97599 0.94289 0.80074 1.21015 1.51139 0.91136 0.93279 0.93733 1.25434 0.94114 1.02540 0.94589 1.69988 1.49130 1.37179 0.98703 0.85657 0.78218 0.80570 0.77877 1.20479 1.19757 1.20014 1.19620 0.90649 0.89763 0.82140 1.22345 0.91132 1.10420 1.04632 1.21736 0.93963 0.87056 0.88446 1.21105 0.90647 0.99401 0.84746 1.87989 1.36620 1.78330 1.29555 1.22966 0.93315 0.97345 0.93128 1.67486 1.31143 1.18637 1.06072 1.22968 0.79656 0.95582 0.92843 1.70919 1.25266 1.24833 1.08954 1.27132 0.84238 0.93965 0.99507 1.78324 1.19306 1.23402 0.98474 1.48825 1.10668 1.39861 1.13344 0.89041 0.92831 0.92579 0.89555 0.92994 0.93984 0.96872 0.92161 0.79418 0.87195 0.87946 0.91563 0.92298 0.89617 0.70963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.93 71.98 0.71 -3.38 16 2 C 0.05 1.69 5.57 86.30 0.48 2.17 16 3 N -0.48 -20.62 4.45 -704.67 -3.14 -23.76 16 4 C 0.20 9.74 4.12 85.56 0.35 10.09 16 5 C -0.53 -27.54 7.04 25.60 0.18 -27.36 16 6 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 7 C 0.03 1.80 5.46 84.65 0.46 2.26 16 8 N -0.91 -48.78 13.29 21.45 0.28 -48.49 16 9 Si 0.95 41.83 29.54 68.60 2.03 43.85 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.40 17.07 6.26 131.99 0.83 17.90 16 14 C -0.26 -10.67 7.52 22.50 0.17 -10.50 16 15 C 0.25 8.91 6.81 42.83 0.29 9.20 16 16 C 0.12 3.22 6.48 71.24 0.46 3.69 16 17 O -0.41 -12.72 9.19 -148.98 -1.37 -14.09 16 18 C 0.03 0.61 11.01 113.37 1.25 1.86 16 19 N -0.51 -19.62 10.38 -186.12 -1.93 -21.55 16 20 C 0.45 18.26 8.99 261.61 2.35 20.62 16 21 N -0.56 -20.92 11.26 -203.46 -2.29 -23.21 16 22 C 0.25 7.73 12.98 180.82 2.35 10.07 16 23 N -0.36 -13.33 10.92 -61.35 -0.67 -14.00 16 24 N -0.34 -14.12 3.65 -194.98 -0.71 -14.83 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 1.75 6.87 -2.39 -0.02 1.73 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.09 3.07 5.82 -2.38 -0.01 3.05 16 29 H 0.05 1.78 8.01 -2.39 -0.02 1.76 16 30 H 0.04 2.08 6.55 -2.38 -0.02 2.07 16 31 H 0.01 0.68 6.54 -2.39 -0.02 0.66 16 32 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 33 H 0.19 8.71 4.01 -2.91 -0.01 8.69 16 34 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.28 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -65.46 325.16 3.16 -62.30 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 1.08 Total: 17.16 kcal Atomic # 6 Polarization: 26.73 SS G_CDS: 9.89 Total: 36.61 kcal Atomic # 7 Polarization: -137.38 SS G_CDS: -8.46 Total: -145.83 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.37 Total: -14.09 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -65.46 3.16 -62.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127740106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.009 kcal (2) G-P(sol) polarization free energy of solvation -65.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds