Wall clock time and date at job start Tue Mar 31 2020 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47494 * 2 1 4 4 C 1.50703 * 109.46895 * 239.99753 * 2 1 3 5 5 H 1.08004 * 119.99821 * 239.99616 * 4 2 1 6 6 C 1.37873 * 120.00201 * 60.00517 * 4 2 1 7 7 N 1.31516 * 119.99639 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47347 * 89.99650 * 8 6 4 10 10 H 1.48507 * 109.46995 * 209.99691 * 8 6 4 11 11 H 1.48499 * 109.47230 * 329.99866 * 8 6 4 12 12 S 1.81402 * 109.47081 * 119.99633 * 2 1 3 13 13 C 1.76196 * 102.99958 * 189.38076 * 12 2 1 14 14 C 1.38724 * 120.10361 * 5.72330 * 13 12 2 15 15 C 1.38248 * 119.99622 * 180.27628 * 14 13 12 16 16 C 1.38273 * 120.19626 * 359.76523 * 15 14 13 17 17 C 1.38287 * 120.20071 * 359.95863 * 16 15 14 18 18 C 1.38640 * 120.00624 * 0.03999 * 17 16 15 19 19 N 1.40011 * 120.09643 * 179.97438 * 18 17 16 20 20 C 1.46494 * 119.99915 * 359.72559 * 19 18 17 21 21 C 1.53004 * 109.46953 * 180.27911 * 20 19 18 22 22 C 1.53788 * 113.61112 * 274.13810 * 21 20 19 23 23 C 1.53961 * 87.01760 * 220.04962 * 22 21 20 24 24 C 1.53778 * 87.11294 * 25.35937 * 23 22 21 25 25 H 1.08995 * 109.47146 * 173.80299 * 1 2 3 26 26 H 1.09001 * 109.46747 * 293.79888 * 1 2 3 27 27 H 1.08994 * 109.46753 * 53.79650 * 1 2 3 28 28 H 0.97006 * 120.00004 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.00759 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.90483 * 179.74345 * 15 14 13 31 31 H 1.07998 * 119.90024 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.99332 * 180.02562 * 17 16 15 33 33 H 0.97002 * 119.99771 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47558 * 300.27373 * 20 19 18 35 35 H 1.08991 * 109.47774 * 60.27796 * 20 19 18 36 36 H 1.08997 * 112.85048 * 45.33109 * 21 20 19 37 37 H 1.09003 * 113.61072 * 334.56151 * 22 21 20 38 38 H 1.08995 * 113.61496 * 105.47346 * 22 21 20 39 39 H 1.09000 * 113.53285 * 270.81090 * 23 22 21 40 40 H 1.08992 * 113.66926 * 139.93143 * 23 22 21 41 41 H 1.08994 * 113.61952 * 220.09249 * 24 23 22 42 42 H 1.09000 * 113.69244 * 89.19956 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.3448 -2.1618 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 16 2.1347 -0.8550 1.4812 13 6 3.8638 -0.5172 1.4557 14 6 4.3902 0.3457 0.5057 15 6 5.7480 0.6047 0.4841 16 6 6.5843 0.0097 1.4107 17 6 6.0674 -0.8474 2.3649 18 6 4.7071 -1.1131 2.3942 19 7 4.1818 -1.9810 3.3591 20 6 5.0708 -2.6145 4.3360 21 6 4.2509 -3.5128 5.2644 22 6 3.6436 -2.7673 6.4646 23 6 4.0024 -4.0026 7.3107 24 6 5.1042 -4.2934 6.2781 25 1 -0.3633 -1.0216 -0.1109 26 1 -0.3633 0.4147 0.9403 27 1 -0.3632 0.6070 -0.8292 28 1 0.7083 1.1608 -3.4844 29 1 3.7400 0.8120 -0.2197 30 1 6.1569 1.2735 -0.2588 31 1 7.6444 0.2151 1.3892 32 1 6.7237 -1.3101 3.0873 33 1 3.2298 -2.1661 3.3781 34 1 5.8154 -3.2152 3.8137 35 1 5.5718 -1.8455 4.9239 36 1 3.5336 -4.1337 4.7277 37 1 4.1953 -1.8703 6.7460 38 1 2.5711 -2.5952 6.3745 39 1 3.2161 -4.7571 7.3345 40 1 4.3859 -3.7581 8.3012 41 1 5.2090 -5.3512 6.0375 42 1 6.0564 -3.8150 6.5071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152723648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:00 Heat of formation + Delta-G solvation = 30.764095 kcal Electronic energy + Delta-G solvation = -20608.802140 eV Core-core repulsion = 17679.733081 eV Total energy + Delta-G solvation = -2929.069058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.37408 -38.40076 -34.91440 -34.02054 -30.56369 -30.25641 -29.58689 -26.79208 -25.75700 -25.30484 -23.32214 -22.14742 -21.41819 -20.51788 -19.58189 -17.16332 -16.40242 -16.20378 -15.96416 -15.45211 -14.88743 -14.51479 -14.30047 -13.98347 -13.42648 -13.36222 -13.18255 -12.91871 -12.64273 -12.54468 -12.07779 -11.78571 -11.63790 -11.52133 -11.10179 -10.93401 -10.76119 -10.71116 -10.48257 -10.44543 -10.43187 -10.30474 -9.94603 -9.62979 -9.33083 -8.91356 -8.83607 -8.44284 -7.28697 -6.31248 -6.02512 -4.22987 1.96583 2.20092 2.76109 3.25530 3.32262 3.37306 3.63896 3.86327 4.36146 4.40837 4.46138 4.50096 4.57724 4.69867 5.16571 5.18743 5.30667 5.43873 5.51219 5.54927 5.59572 5.63179 5.70292 5.77163 5.83634 5.88484 6.06751 6.13527 6.26321 6.31407 6.56225 6.65056 6.73450 6.76073 6.86284 6.97066 7.23322 7.34742 7.45406 7.61711 7.79135 7.83913 8.05816 8.12228 8.78511 9.41612 10.90055 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.004189 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.757985 B = 6682.126360 C = 7354.325830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.099 3.901 3 H 0.050 0.950 4 C -0.515 4.515 5 H 0.066 0.934 6 C 0.069 3.931 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.271 1.271 12 S -0.206 6.206 13 C -0.120 4.120 14 C -0.068 4.068 15 C -0.166 4.166 16 C -0.094 4.094 17 C -0.196 4.196 18 C 0.220 3.780 19 N -0.745 5.745 20 C 0.140 3.860 21 C -0.123 4.123 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.131 4.131 25 H 0.038 0.962 26 H 0.019 0.981 27 H 0.097 0.903 28 H 0.264 0.736 29 H 0.143 0.857 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.402 0.598 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.770 -5.411 14.606 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.554 4.554 5 H 0.085 0.915 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.196 1.196 12 S 0.039 5.961 13 C -0.237 4.237 14 C -0.092 4.092 15 C -0.187 4.187 16 C -0.115 4.115 17 C -0.220 4.220 18 C 0.113 3.887 19 N -0.378 5.378 20 C 0.015 3.985 21 C -0.142 4.142 22 C -0.173 4.173 23 C -0.180 4.180 24 C -0.169 4.169 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.239 0.761 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.053 -6.005 15.382 17.955 hybrid contribution 0.721 0.158 -1.899 2.038 sum 7.774 -5.847 13.482 16.625 Atomic orbital electron populations 1.21630 0.95286 1.01220 1.00202 1.21044 0.95718 0.96639 0.89444 0.93238 1.21272 1.31938 1.12884 0.89310 0.91550 1.24954 0.94737 0.94858 0.98907 1.69875 1.36244 1.22655 1.23912 0.86499 0.79535 0.79429 0.82177 1.20507 1.21091 1.19616 1.84344 0.99768 1.72350 1.39667 1.21081 0.97107 1.04599 1.00872 1.21395 0.95724 0.95519 0.96548 1.20815 0.93526 1.03557 1.00837 1.20743 0.98673 0.96988 0.95126 1.20339 0.92677 1.05621 1.03404 1.17345 0.91746 0.90608 0.89044 1.44674 1.09779 1.50208 1.33110 1.21227 0.92754 0.94702 0.89776 1.22775 0.98795 0.97831 0.94791 1.23006 1.01349 0.97243 0.95703 1.22840 0.98824 0.98482 0.97878 1.22861 0.97784 1.00245 0.96018 0.94251 0.96176 0.88508 0.92622 0.83901 0.86893 0.87062 0.86896 0.76126 0.92766 0.92686 0.88677 0.89980 0.91325 0.90248 0.91522 0.91369 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.88 37.16 0.33 -2.59 16 2 C 0.10 2.43 2.00 -27.88 -0.06 2.38 16 3 H 0.05 1.30 6.90 -51.93 -0.36 0.94 16 4 C -0.51 -13.68 7.07 -34.44 -0.24 -13.92 16 5 H 0.07 1.84 7.71 -52.48 -0.40 1.43 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -24.21 11.39 55.43 0.63 -23.58 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 S -0.21 -4.46 19.76 -107.50 -2.12 -6.59 16 13 C -0.12 -2.51 6.06 -38.92 -0.24 -2.74 16 14 C -0.07 -1.43 8.84 -39.40 -0.35 -1.78 16 15 C -0.17 -3.01 10.04 -39.56 -0.40 -3.41 16 16 C -0.09 -1.52 10.04 -39.55 -0.40 -1.91 16 17 C -0.20 -3.20 9.31 -39.41 -0.37 -3.57 16 18 C 0.22 4.00 6.66 -83.49 -0.56 3.45 16 19 N -0.75 -11.56 5.68 -58.45 -0.33 -11.90 16 20 C 0.14 1.66 4.74 -4.04 -0.02 1.64 16 21 C -0.12 -1.22 3.75 -89.80 -0.34 -1.56 16 22 C -0.14 -1.27 7.65 -25.82 -0.20 -1.47 16 23 C -0.14 -1.12 8.09 -25.83 -0.21 -1.33 16 24 C -0.13 -1.06 7.65 -25.92 -0.20 -1.26 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.10 2.45 6.26 -51.93 -0.33 2.12 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.14 3.35 5.12 -52.49 -0.27 3.08 16 30 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.55 6.74 -52.48 -0.35 1.20 16 33 H 0.40 6.47 7.02 -40.82 -0.29 6.18 16 34 H 0.05 0.64 7.95 -51.93 -0.41 0.23 16 35 H 0.05 0.63 7.69 -51.93 -0.40 0.23 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -27.39 346.59 -11.53 -38.91 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.58 Total: 8.25 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -3.33 Total: -26.32 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.30 Total: -35.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -2.12 Total: -6.59 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.39 -11.53 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152723648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.679 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds