Wall clock time and date at job start Tue Mar 31 2020 06:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47494 * 2 1 4 4 C 1.50703 * 109.46895 * 239.99753 * 2 1 3 5 5 H 1.08004 * 119.99821 * 239.99616 * 4 2 1 6 6 C 1.37873 * 120.00201 * 60.00517 * 4 2 1 7 7 N 1.31516 * 119.99639 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47347 * 89.99650 * 8 6 4 10 10 H 1.48507 * 109.46995 * 209.99691 * 8 6 4 11 11 H 1.48499 * 109.47230 * 329.99866 * 8 6 4 12 12 S 1.81402 * 109.47081 * 119.99633 * 2 1 3 13 13 C 1.76196 * 102.99958 * 189.38076 * 12 2 1 14 14 C 1.38724 * 120.10361 * 5.72330 * 13 12 2 15 15 C 1.38248 * 119.99622 * 180.27628 * 14 13 12 16 16 C 1.38273 * 120.19626 * 359.76523 * 15 14 13 17 17 C 1.38287 * 120.20071 * 359.95863 * 16 15 14 18 18 C 1.38640 * 120.00624 * 0.03999 * 17 16 15 19 19 N 1.40011 * 120.09643 * 179.97438 * 18 17 16 20 20 C 1.46494 * 119.99915 * 359.72559 * 19 18 17 21 21 C 1.53004 * 109.46953 * 180.27911 * 20 19 18 22 22 C 1.53788 * 113.61112 * 274.13810 * 21 20 19 23 23 C 1.53961 * 87.01760 * 220.04962 * 22 21 20 24 24 C 1.53778 * 87.11294 * 25.35937 * 23 22 21 25 25 H 1.08995 * 109.47146 * 173.80299 * 1 2 3 26 26 H 1.09001 * 109.46747 * 293.79888 * 1 2 3 27 27 H 1.08994 * 109.46753 * 53.79650 * 1 2 3 28 28 H 0.97006 * 120.00004 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.00759 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.90483 * 179.74345 * 15 14 13 31 31 H 1.07998 * 119.90024 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.99332 * 180.02562 * 17 16 15 33 33 H 0.97002 * 119.99771 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47558 * 300.27373 * 20 19 18 35 35 H 1.08991 * 109.47774 * 60.27796 * 20 19 18 36 36 H 1.08997 * 112.85048 * 45.33109 * 21 20 19 37 37 H 1.09003 * 113.61072 * 334.56151 * 22 21 20 38 38 H 1.08995 * 113.61496 * 105.47346 * 22 21 20 39 39 H 1.09000 * 113.53285 * 270.81090 * 23 22 21 40 40 H 1.08992 * 113.66926 * 139.93143 * 23 22 21 41 41 H 1.08994 * 113.61952 * 220.09249 * 24 23 22 42 42 H 1.09000 * 113.69244 * 89.19956 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.3448 -2.1618 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 16 2.1347 -0.8550 1.4812 13 6 3.8638 -0.5172 1.4557 14 6 4.3902 0.3457 0.5057 15 6 5.7480 0.6047 0.4841 16 6 6.5843 0.0097 1.4107 17 6 6.0674 -0.8474 2.3649 18 6 4.7071 -1.1131 2.3942 19 7 4.1818 -1.9810 3.3591 20 6 5.0708 -2.6145 4.3360 21 6 4.2509 -3.5128 5.2644 22 6 3.6436 -2.7673 6.4646 23 6 4.0024 -4.0026 7.3107 24 6 5.1042 -4.2934 6.2781 25 1 -0.3633 -1.0216 -0.1109 26 1 -0.3633 0.4147 0.9403 27 1 -0.3632 0.6070 -0.8292 28 1 0.7083 1.1608 -3.4844 29 1 3.7400 0.8120 -0.2197 30 1 6.1569 1.2735 -0.2588 31 1 7.6444 0.2151 1.3892 32 1 6.7237 -1.3101 3.0873 33 1 3.2298 -2.1661 3.3781 34 1 5.8154 -3.2152 3.8137 35 1 5.5718 -1.8455 4.9239 36 1 3.5336 -4.1337 4.7277 37 1 4.1953 -1.8703 6.7460 38 1 2.5711 -2.5952 6.3745 39 1 3.2161 -4.7571 7.3345 40 1 4.3859 -3.7581 8.3012 41 1 5.2090 -5.3512 6.0375 42 1 6.0564 -3.8150 6.5071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152723648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:59 Heat of formation + Delta-G solvation = 18.756012 kcal Electronic energy + Delta-G solvation = -20609.322849 eV Core-core repulsion = 17679.733081 eV Total energy + Delta-G solvation = -2929.589768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.39694 -39.50125 -36.33719 -35.81397 -32.41645 -31.78912 -30.82170 -27.90256 -27.32530 -26.44025 -24.40845 -23.72916 -22.90261 -21.94241 -20.33075 -18.63234 -18.36777 -17.43487 -17.31102 -16.78000 -16.29411 -15.73816 -15.46672 -15.23419 -15.03754 -14.80553 -14.70944 -14.41935 -13.83640 -13.47764 -13.36553 -13.30020 -12.91810 -12.85930 -12.74941 -12.61317 -12.38701 -12.32559 -12.12822 -11.57711 -11.45745 -11.29845 -11.22643 -11.18884 -10.85070 -10.79933 -10.50717 -10.29375 -8.72157 -8.22562 -7.71903 -6.33840 0.52537 0.77810 1.10663 1.37700 1.39218 1.49426 1.94606 2.39072 2.59946 3.01409 3.09271 3.70853 3.76060 3.82602 4.00623 4.09775 4.30931 4.36403 4.52792 4.54993 4.61151 4.72332 4.73848 4.83818 4.86720 4.88685 4.89198 4.90202 5.00390 5.10789 5.13398 5.17409 5.33854 5.34861 5.39175 5.56797 5.60121 5.60864 5.76762 5.80995 6.04235 6.05628 6.52300 6.67851 6.79858 7.32477 8.84718 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.004189 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.757985 B = 6682.126360 C = 7354.325830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.095 3.905 3 H 0.023 0.977 4 C -0.521 4.521 5 H 0.049 0.951 6 C 0.028 3.972 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.274 1.274 12 S -0.196 6.196 13 C -0.156 4.156 14 C -0.090 4.090 15 C -0.178 4.178 16 C -0.078 4.078 17 C -0.192 4.192 18 C 0.218 3.782 19 N -0.745 5.745 20 C 0.138 3.862 21 C -0.126 4.126 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.122 4.122 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.266 0.734 29 H 0.107 0.893 30 H 0.127 0.873 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.397 0.603 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.146 -6.651 16.052 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.033 4.033 3 H 0.041 0.959 4 C -0.560 4.560 5 H 0.068 0.932 6 C -0.173 4.173 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.199 1.199 12 S 0.048 5.952 13 C -0.272 4.272 14 C -0.115 4.115 15 C -0.200 4.200 16 C -0.099 4.099 17 C -0.217 4.217 18 C 0.109 3.891 19 N -0.375 5.375 20 C 0.015 3.985 21 C -0.145 4.145 22 C -0.177 4.177 23 C -0.174 4.174 24 C -0.160 4.160 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.145 0.855 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.232 0.768 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.444 -7.257 16.852 20.636 hybrid contribution 0.082 0.542 -2.245 2.311 sum 9.526 -6.715 14.607 18.687 Atomic orbital electron populations 1.21476 0.94758 1.00655 1.00403 1.20821 0.96228 0.95467 0.90745 0.95939 1.21290 1.31794 1.12389 0.90509 0.93236 1.25609 0.94921 0.95485 1.01295 1.69971 1.36920 1.23528 1.24503 0.85625 0.78797 0.78556 0.79207 1.19910 1.20334 1.19930 1.83998 1.01550 1.72202 1.37467 1.21182 0.96468 1.06708 1.02869 1.21218 0.96885 0.96653 0.96699 1.21030 0.92469 1.04369 1.02143 1.21193 1.00365 0.95014 0.93284 1.20764 0.92063 1.05063 1.03777 1.17568 0.92374 0.90454 0.88728 1.44895 1.10077 1.49534 1.33016 1.21460 0.92603 0.95122 0.89338 1.22781 0.99089 0.97905 0.94733 1.23035 1.00709 0.97970 0.96031 1.22823 0.98820 0.97550 0.98247 1.22855 0.97964 1.00411 0.94772 0.94562 0.94291 0.90448 0.92458 0.87467 0.85467 0.82913 0.83491 0.76814 0.92088 0.91550 0.89652 0.89902 0.92370 0.90013 0.90383 0.90714 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.53 8.88 71.98 0.64 -4.89 16 2 C 0.10 4.91 2.00 29.85 0.06 4.97 16 3 H 0.02 1.27 6.90 -2.39 -0.02 1.25 16 4 C -0.52 -28.70 7.07 25.60 0.18 -28.52 16 5 H 0.05 2.84 7.71 -2.91 -0.02 2.82 16 6 C 0.03 1.54 5.30 84.65 0.45 1.99 16 7 N -0.91 -51.02 11.39 21.45 0.24 -50.77 16 8 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 S -0.20 -8.75 19.76 -56.49 -1.12 -9.86 16 13 C -0.16 -6.61 6.06 22.70 0.14 -6.47 16 14 C -0.09 -3.94 8.84 22.39 0.20 -3.74 16 15 C -0.18 -6.34 10.04 22.28 0.22 -6.12 16 16 C -0.08 -2.26 10.04 22.29 0.22 -2.03 16 17 C -0.19 -5.66 9.31 22.38 0.21 -5.46 16 18 C 0.22 7.65 6.66 38.24 0.25 7.91 16 19 N -0.74 -22.14 5.68 -338.84 -1.93 -24.07 16 20 C 0.14 2.92 4.74 86.38 0.41 3.33 16 21 C -0.13 -2.26 3.75 -10.26 -0.04 -2.30 16 22 C -0.14 -2.39 7.65 31.18 0.24 -2.15 16 23 C -0.14 -1.82 8.09 31.18 0.25 -1.57 16 24 C -0.12 -1.61 7.65 31.12 0.24 -1.38 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.08 4.06 6.26 -2.39 -0.01 4.05 16 28 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 29 H 0.11 5.38 5.12 -2.91 -0.01 5.37 16 30 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.15 3.32 6.74 -2.91 -0.02 3.30 16 33 H 0.40 12.60 7.02 -92.71 -0.65 11.95 16 34 H 0.06 1.24 7.95 -2.39 -0.02 1.22 16 35 H 0.07 1.29 7.69 -2.39 -0.02 1.27 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.40 7.92 -2.39 -0.02 1.38 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 42 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 Total: -1.00 -60.63 346.59 3.26 -57.38 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.35 Total: 27.98 kcal Atomic # 6 Polarization: -50.12 SS G_CDS: 3.67 Total: -46.44 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -1.68 Total: -74.85 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.12 Total: -9.86 kcal Total: -60.63 3.26 -57.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152723648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.134 kcal (2) G-P(sol) polarization free energy of solvation -60.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds