Wall clock time and date at job start Tue Mar 31 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47142 * 2 1 4 4 N 1.29946 * 126.29125 * 270.03113 * 3 2 1 5 5 O 1.21296 * 110.25105 * 179.68577 * 4 3 2 6 6 C 1.33644 * 109.81163 * 0.46223 * 5 4 3 7 7 C 1.50701 * 126.55124 * 179.80682 * 6 5 4 8 8 H 1.08998 * 109.47143 * 194.69289 * 7 6 5 9 9 C 1.52997 * 109.47234 * 74.68666 * 7 6 5 10 10 N 1.46501 * 109.46790 * 314.68972 * 7 6 5 11 11 C 1.39994 * 119.99823 * 205.00076 * 10 7 6 12 12 C 1.40431 * 125.97687 * 0.02562 * 11 10 7 13 13 C 1.35240 * 107.86471 * 180.02562 * 12 11 10 14 14 N 1.34959 * 107.86278 * 359.97438 * 13 12 11 15 15 C 1.46500 * 125.97494 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.99548 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31222 * 125.97402 * 180.36594 * 11 10 7 25 25 N 1.31129 * 106.89437 * 359.54220 * 6 5 4 26 26 H 1.08999 * 109.46638 * 299.99731 * 1 2 3 27 27 H 1.09000 * 109.47080 * 59.99502 * 1 2 3 28 28 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47052 * 240.00587 * 2 1 3 30 30 H 1.08990 * 109.47541 * 120.00213 * 2 1 3 31 31 H 1.09004 * 109.47052 * 60.00372 * 9 7 6 32 32 H 1.09008 * 109.46978 * 179.97438 * 9 7 6 33 33 H 1.08998 * 109.47058 * 299.99787 * 9 7 6 34 34 H 0.97002 * 120.00496 * 24.99949 * 10 7 6 35 35 H 1.08002 * 126.06596 * 0.06137 * 12 11 10 36 36 H 1.08002 * 126.07271 * 179.97438 * 13 12 11 37 37 H 1.09004 * 109.47078 * 5.00309 * 15 14 13 38 38 H 1.08993 * 109.47364 * 245.00081 * 15 14 13 39 39 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2882 2.1462 -1.0474 5 8 2.6711 3.2472 -0.7122 6 6 2.7062 3.3281 0.6213 7 6 3.1284 4.5228 1.4372 8 1 3.3022 4.2154 2.4684 9 6 2.0247 5.5817 1.3997 10 7 4.3620 5.0833 0.8801 11 6 5.2271 5.8207 1.6971 12 6 5.0377 6.0984 3.0606 13 6 6.0905 6.8340 3.4843 14 7 6.9174 7.0170 2.4335 15 6 8.1799 7.7598 2.4510 16 6 9.2902 6.8755 1.9447 17 1 9.0766 5.8617 1.6399 18 6 10.5787 7.3606 1.8706 19 7 10.8378 8.5969 2.2367 20 14 11.9548 6.2647 1.2423 21 1 13.2335 7.0196 1.2545 22 1 12.0760 5.0713 2.1178 23 1 11.6486 5.8320 -0.1449 24 7 6.3538 6.3786 1.3212 25 7 2.2977 2.1712 1.0841 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.1068 5.1647 1.8142 32 1 2.3299 6.4456 1.9903 33 1 1.8510 5.8891 0.3685 34 1 4.5793 4.9434 -0.0549 35 1 4.2003 5.7804 3.6639 36 1 6.2426 7.2085 4.4858 37 1 8.4024 8.0742 3.4708 38 1 8.0940 8.6377 1.8108 39 1 10.1233 9.1661 2.5628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152783931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:16 Heat of formation + Delta-G solvation = 142.495140 kcal Electronic energy + Delta-G solvation = -22194.745295 eV Core-core repulsion = 18756.520795 eV Total energy + Delta-G solvation = -3438.224500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.82897 -40.40518 -37.10985 -36.59116 -34.15082 -33.55077 -32.04739 -30.90823 -29.87401 -28.92243 -26.20642 -25.40347 -24.88298 -23.13875 -22.94265 -21.23114 -20.37564 -19.57597 -18.31939 -17.68175 -17.20644 -16.81692 -16.00052 -15.11016 -14.88923 -14.69086 -14.47089 -14.20299 -13.78716 -13.68207 -13.37090 -13.16290 -12.80703 -12.46404 -12.35380 -12.26101 -12.14044 -11.85041 -11.68424 -11.64294 -11.57463 -11.21204 -11.11721 -10.77113 -10.26250 -10.15261 -10.02889 -9.76970 -8.91453 -8.56238 -8.09303 -7.25183 -6.55979 -4.29878 0.86852 1.94280 2.49425 2.75605 2.83240 3.38910 3.40826 3.41688 3.57046 3.60008 3.74832 4.04114 4.42787 4.47866 4.74621 4.79262 4.80899 4.91687 5.02736 5.17400 5.30295 5.37143 5.42037 5.48011 5.50033 5.56564 5.69366 5.75639 5.80866 5.95441 6.09983 6.30993 6.50519 6.70127 6.89520 7.37805 7.66874 7.86233 7.89674 7.96949 8.37391 8.60505 8.71151 9.38108 10.81332 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.003006 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.961492 B = 9311.468948 C =10130.505290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C 0.170 3.830 4 N -0.382 5.382 5 O 0.082 5.918 6 C 0.184 3.816 7 C 0.270 3.730 8 H 0.122 0.878 9 C -0.168 4.168 10 N -0.723 5.723 11 C 0.308 3.692 12 C -0.330 4.330 13 C 0.069 3.931 14 N -0.323 5.323 15 C 0.251 3.749 16 C -0.606 4.606 17 H 0.063 0.937 18 C 0.022 3.978 19 N -0.906 5.906 20 Si 1.076 2.924 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.322 5.322 25 N -0.472 5.472 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.405 0.595 35 H 0.135 0.865 36 H 0.165 0.835 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.774 -11.352 -0.203 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.103 4.103 4 N -0.089 5.089 5 O 0.024 5.976 6 C -0.038 4.038 7 C 0.160 3.840 8 H 0.139 0.861 9 C -0.228 4.228 10 N -0.367 5.367 11 C 0.052 3.948 12 C -0.363 4.363 13 C -0.083 4.083 14 N -0.102 5.102 15 C 0.132 3.868 16 C -0.644 4.644 17 H 0.081 0.919 18 C -0.182 4.182 19 N -0.541 5.541 20 Si 0.903 3.097 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.211 1.211 24 N -0.154 5.154 25 N -0.206 5.206 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.153 0.847 36 H 0.182 0.818 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.470 -11.703 -1.845 21.943 hybrid contribution -2.060 -0.011 0.738 2.188 sum -20.530 -11.713 -1.107 23.662 Atomic orbital electron populations 1.21737 0.93236 1.02845 1.02687 1.19946 0.96813 0.85570 1.04836 1.25928 1.00363 1.00569 0.83411 1.74642 1.17602 0.92778 1.23910 1.85294 1.60659 1.26983 1.24656 1.29018 0.95874 0.96662 0.82235 1.19056 0.85471 0.84529 0.94912 0.86058 1.22389 0.97289 0.99195 1.03946 1.43171 1.21079 1.60894 1.11594 1.18989 0.90776 0.95126 0.89947 1.20749 1.04871 1.16262 0.94457 1.22359 0.91455 0.99927 0.94537 1.48753 1.17873 1.39090 1.04502 1.19705 0.77352 0.91595 0.98126 1.22101 0.93332 1.00861 1.48102 0.91874 1.25907 0.99445 0.98018 0.94847 1.70854 1.36444 1.06678 1.40157 0.83431 0.75226 0.74569 0.76481 1.20545 1.21267 1.21143 1.77488 1.09319 1.18709 1.09838 1.71869 1.17973 1.01345 1.29434 0.91926 0.92337 0.90993 0.89018 0.88466 0.91231 0.89500 0.91414 0.75982 0.84747 0.81812 0.93826 0.94897 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.90 37.16 0.37 -0.59 16 2 C -0.03 -0.26 6.56 -27.88 -0.18 -0.45 16 3 C 0.17 2.01 7.47 -156.38 -1.17 0.85 16 4 N -0.38 -5.03 12.16 30.90 0.38 -4.65 16 5 O 0.08 1.06 11.14 18.10 0.20 1.26 16 6 C 0.18 2.22 7.26 -13.06 -0.09 2.13 16 7 C 0.27 3.01 3.11 -69.08 -0.22 2.80 16 8 H 0.12 1.31 7.14 -51.93 -0.37 0.94 16 9 C -0.17 -1.52 9.48 37.16 0.35 -1.17 16 10 N -0.72 -10.43 5.28 -54.70 -0.29 -10.72 16 11 C 0.31 5.62 8.14 -154.54 -1.26 4.36 16 12 C -0.33 -5.44 9.92 -39.82 -0.40 -5.84 16 13 C 0.07 1.25 11.43 -17.24 -0.20 1.06 16 14 N -0.32 -7.31 3.66 -62.56 -0.23 -7.54 16 15 C 0.25 6.28 5.57 -5.19 -0.03 6.25 16 16 C -0.61 -17.08 9.24 -34.44 -0.32 -17.40 16 17 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 18 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 19 N -0.91 -26.40 13.65 55.43 0.76 -25.64 16 20 Si 1.08 25.15 29.90 -169.99 -5.08 20.06 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 N -0.32 -7.33 12.43 31.41 0.39 -6.94 16 25 N -0.47 -5.94 11.55 -9.87 -0.11 -6.06 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.40 5.81 8.58 -40.82 -0.35 5.46 16 35 H 0.13 1.74 7.45 -52.49 -0.39 1.35 16 36 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.04 1.05 7.94 -51.93 -0.41 0.64 16 38 H 0.03 0.87 8.00 -51.93 -0.42 0.45 16 39 H 0.27 7.58 7.22 -40.82 -0.29 7.28 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -32.79 341.98 -7.32 -40.11 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.25 Total: 2.43 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -3.24 Total: -7.47 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.89 Total: -61.54 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.79 -7.32 -40.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152783931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.601 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds