Wall clock time and date at job start Tue Mar 31 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47142 * 2 1 4 4 N 1.29946 * 126.29125 * 270.03113 * 3 2 1 5 5 O 1.21296 * 110.25105 * 179.68577 * 4 3 2 6 6 C 1.33644 * 109.81163 * 0.46223 * 5 4 3 7 7 C 1.50701 * 126.55124 * 179.80682 * 6 5 4 8 8 H 1.08998 * 109.47143 * 194.69289 * 7 6 5 9 9 C 1.52997 * 109.47234 * 74.68666 * 7 6 5 10 10 N 1.46501 * 109.46790 * 314.68972 * 7 6 5 11 11 C 1.39994 * 119.99823 * 205.00076 * 10 7 6 12 12 C 1.40431 * 125.97687 * 0.02562 * 11 10 7 13 13 C 1.35240 * 107.86471 * 180.02562 * 12 11 10 14 14 N 1.34959 * 107.86278 * 359.97438 * 13 12 11 15 15 C 1.46500 * 125.97494 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.99548 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31222 * 125.97402 * 180.36594 * 11 10 7 25 25 N 1.31129 * 106.89437 * 359.54220 * 6 5 4 26 26 H 1.08999 * 109.46638 * 299.99731 * 1 2 3 27 27 H 1.09000 * 109.47080 * 59.99502 * 1 2 3 28 28 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47052 * 240.00587 * 2 1 3 30 30 H 1.08990 * 109.47541 * 120.00213 * 2 1 3 31 31 H 1.09004 * 109.47052 * 60.00372 * 9 7 6 32 32 H 1.09008 * 109.46978 * 179.97438 * 9 7 6 33 33 H 1.08998 * 109.47058 * 299.99787 * 9 7 6 34 34 H 0.97002 * 120.00496 * 24.99949 * 10 7 6 35 35 H 1.08002 * 126.06596 * 0.06137 * 12 11 10 36 36 H 1.08002 * 126.07271 * 179.97438 * 13 12 11 37 37 H 1.09004 * 109.47078 * 5.00309 * 15 14 13 38 38 H 1.08993 * 109.47364 * 245.00081 * 15 14 13 39 39 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2882 2.1462 -1.0474 5 8 2.6711 3.2472 -0.7122 6 6 2.7062 3.3281 0.6213 7 6 3.1284 4.5228 1.4372 8 1 3.3022 4.2154 2.4684 9 6 2.0247 5.5817 1.3997 10 7 4.3620 5.0833 0.8801 11 6 5.2271 5.8207 1.6971 12 6 5.0377 6.0984 3.0606 13 6 6.0905 6.8340 3.4843 14 7 6.9174 7.0170 2.4335 15 6 8.1799 7.7598 2.4510 16 6 9.2902 6.8755 1.9447 17 1 9.0766 5.8617 1.6399 18 6 10.5787 7.3606 1.8706 19 7 10.8378 8.5969 2.2367 20 14 11.9548 6.2647 1.2423 21 1 13.2335 7.0196 1.2545 22 1 12.0760 5.0713 2.1178 23 1 11.6486 5.8320 -0.1449 24 7 6.3538 6.3786 1.3212 25 7 2.2977 2.1712 1.0841 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.1068 5.1647 1.8142 32 1 2.3299 6.4456 1.9903 33 1 1.8510 5.8891 0.3685 34 1 4.5793 4.9434 -0.0549 35 1 4.2003 5.7804 3.6639 36 1 6.2426 7.2085 4.4858 37 1 8.4024 8.0742 3.4708 38 1 8.0940 8.6377 1.8108 39 1 10.1233 9.1661 2.5628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152783931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:16 Heat of formation + Delta-G solvation = 120.118818 kcal Electronic energy + Delta-G solvation = -22195.715605 eV Core-core repulsion = 18756.520795 eV Total energy + Delta-G solvation = -3439.194810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.77111 -41.88040 -38.20270 -37.46618 -35.95540 -34.65381 -33.26360 -32.06294 -31.25909 -30.21048 -27.97296 -26.14845 -25.91806 -24.87302 -23.93886 -22.33128 -21.78228 -20.83329 -19.28549 -19.20311 -18.64763 -18.15498 -17.23315 -16.26260 -16.02294 -15.80806 -15.70036 -15.55778 -15.15030 -14.89734 -14.61619 -14.08061 -13.95566 -13.76786 -13.69753 -13.57331 -13.16768 -13.06188 -12.73696 -12.65060 -12.57015 -12.46538 -12.31269 -12.01348 -11.96334 -11.61925 -11.26603 -11.10481 -10.83398 -10.67238 -9.58196 -8.87098 -8.59411 -6.53161 -0.08269 1.01849 1.27342 1.50095 1.54150 1.56494 1.59181 1.78210 2.19382 2.34144 2.48779 2.75077 2.96410 3.02561 3.65815 3.94658 3.97054 4.07216 4.18828 4.20646 4.27228 4.29930 4.59742 4.65946 4.70002 4.76944 4.81973 4.86404 4.88043 4.90699 4.99418 5.00343 5.22772 5.24597 5.45142 5.64315 5.94421 6.14418 6.34668 6.51344 6.57800 6.98382 7.20096 7.26374 8.60212 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.003006 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.961492 B = 9311.468948 C =10130.505290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 C 0.170 3.830 4 N -0.403 5.403 5 O 0.070 5.930 6 C 0.186 3.814 7 C 0.271 3.729 8 H 0.133 0.867 9 C -0.161 4.161 10 N -0.719 5.719 11 C 0.316 3.684 12 C -0.315 4.315 13 C 0.064 3.936 14 N -0.356 5.356 15 C 0.262 3.738 16 C -0.618 4.618 17 H 0.041 0.959 18 C -0.020 4.020 19 N -0.924 5.924 20 Si 1.118 2.882 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.279 1.279 24 N -0.386 5.386 25 N -0.483 5.483 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.403 0.597 35 H 0.178 0.822 36 H 0.198 0.802 37 H 0.052 0.948 38 H 0.010 0.990 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.376 -12.945 0.804 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.103 4.103 4 N -0.113 5.113 5 O 0.015 5.985 6 C -0.036 4.036 7 C 0.164 3.836 8 H 0.150 0.850 9 C -0.221 4.221 10 N -0.362 5.362 11 C 0.059 3.941 12 C -0.347 4.347 13 C -0.085 4.085 14 N -0.136 5.136 15 C 0.142 3.858 16 C -0.656 4.656 17 H 0.060 0.940 18 C -0.220 4.220 19 N -0.561 5.561 20 Si 0.939 3.061 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.205 1.205 24 N -0.218 5.218 25 N -0.218 5.218 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.238 0.762 35 H 0.195 0.805 36 H 0.215 0.785 37 H 0.070 0.930 38 H 0.028 0.972 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.133 -13.293 -0.816 24.140 hybrid contribution -1.738 0.407 0.425 1.835 sum -21.871 -12.887 -0.391 25.388 Atomic orbital electron populations 1.21712 0.91978 1.04218 1.02003 1.20205 0.97792 0.83542 1.05907 1.26641 0.99157 1.01702 0.82816 1.74645 1.18846 0.93117 1.24724 1.85273 1.61048 1.27172 1.25014 1.29172 0.95518 0.96810 0.82105 1.19317 0.84691 0.84751 0.94888 0.84960 1.22345 0.97206 0.98422 1.04117 1.43380 1.21445 1.60073 1.11299 1.19319 0.89834 0.93833 0.91153 1.21196 1.05221 1.14558 0.93735 1.23099 0.90849 0.99462 0.95042 1.48438 1.18168 1.41101 1.05899 1.19275 0.78241 0.90633 0.97609 1.22296 0.94762 1.00344 1.48245 0.94028 1.27224 1.01862 0.98524 0.94390 1.70945 1.36345 1.07309 1.41456 0.82902 0.72976 0.73682 0.76540 1.19874 1.19559 1.20492 1.77366 1.11837 1.21356 1.11283 1.71889 1.18520 1.01515 1.29832 0.92427 0.93142 0.88608 0.88021 0.87283 0.89081 0.89308 0.91644 0.76241 0.80517 0.78511 0.92994 0.97230 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.90 71.98 0.71 -0.83 16 2 C -0.04 -0.51 6.56 29.85 0.20 -0.31 16 3 C 0.17 3.79 7.47 138.46 1.03 4.82 16 4 N -0.40 -10.34 12.16 -60.34 -0.73 -11.07 16 5 O 0.07 1.77 11.14 74.83 0.83 2.60 16 6 C 0.19 4.23 7.26 88.38 0.64 4.87 16 7 C 0.27 5.48 3.11 44.24 0.14 5.61 16 8 H 0.13 2.43 7.14 -2.39 -0.02 2.41 16 9 C -0.16 -2.49 9.48 71.98 0.68 -1.81 16 10 N -0.72 -19.94 5.28 -326.96 -1.73 -21.66 16 11 C 0.32 11.23 8.14 133.39 1.09 12.32 16 12 C -0.31 -9.55 9.92 22.11 0.22 -9.33 16 13 C 0.06 2.23 11.43 83.52 0.96 3.19 16 14 N -0.36 -16.24 3.66 -351.84 -1.29 -17.53 16 15 C 0.26 13.52 5.57 85.64 0.48 14.00 16 16 C -0.62 -35.72 9.24 25.60 0.24 -35.48 16 17 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 18 C -0.02 -1.16 5.46 84.65 0.46 -0.70 16 19 N -0.92 -54.58 13.65 21.45 0.29 -54.29 16 20 Si 1.12 50.72 29.90 68.60 2.05 52.77 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 N -0.39 -17.83 12.43 -54.54 -0.68 -18.50 16 25 N -0.48 -11.36 11.55 -303.22 -3.50 -14.86 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.40 11.51 8.58 -92.71 -0.80 10.71 16 35 H 0.18 3.75 7.45 -2.91 -0.02 3.73 16 36 H 0.20 5.23 8.06 -2.91 -0.02 5.20 16 37 H 0.05 2.55 7.94 -2.39 -0.02 2.53 16 38 H 0.01 0.54 8.00 -2.39 -0.02 0.52 16 39 H 0.26 15.19 7.22 -92.71 -0.67 14.52 16 Total: -1.00 -72.44 341.98 2.47 -69.98 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.38 Total: 16.22 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 6.84 Total: -3.66 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -7.64 Total: -137.91 kcal Atomic # 8 Polarization: 1.77 SS G_CDS: 0.83 Total: 2.60 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Total: -72.44 2.47 -69.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152783931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.094 kcal (2) G-P(sol) polarization free energy of solvation -72.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds