Wall clock time and date at job start Tue Mar 31 2020 08:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99736 * 2 1 4 4 H 1.48498 * 109.47401 * 239.99778 * 3 2 1 5 5 H 1.48500 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46975 * 120.00207 * 3 2 1 7 7 C 1.37879 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99604 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46948 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.46933 * 179.97438 * 10 9 7 12 12 C 1.35902 * 116.99654 * 180.02562 * 11 10 9 13 13 C 1.38756 * 120.05938 * 0.02562 * 12 11 10 14 14 C 1.38114 * 119.94723 * 180.02562 * 13 12 11 15 15 C 1.38292 * 120.05579 * 0.02608 * 14 13 12 16 16 C 1.38238 * 120.11109 * 359.95055 * 15 14 13 17 17 C 1.50703 * 119.97274 * 180.02562 * 16 15 14 18 18 N 1.46904 * 109.46855 * 90.00304 * 17 16 15 19 19 C 1.47015 * 110.99903 * 169.99949 * 18 17 16 20 20 C 1.53095 * 109.25739 * 177.60628 * 19 18 17 21 21 O 1.43020 * 109.29124 * 56.82758 * 20 19 18 22 22 C 1.43015 * 113.73974 * 301.39847 * 21 20 19 23 23 C 1.47016 * 110.99833 * 46.36654 * 18 17 16 24 24 C 1.38171 * 120.05685 * 0.28407 * 16 15 14 25 25 H 0.97002 * 120.00453 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46966 * 60.00399 * 9 7 2 27 27 H 1.09002 * 109.47145 * 300.00015 * 9 7 2 28 28 H 1.09003 * 109.46815 * 59.99899 * 10 9 7 29 29 H 1.08993 * 109.47134 * 300.00206 * 10 9 7 30 30 H 1.08003 * 120.02415 * 0.02562 * 13 12 11 31 31 H 1.08006 * 119.97494 * 179.97438 * 14 13 12 32 32 H 1.08000 * 119.94167 * 179.97438 * 15 14 13 33 33 H 1.08996 * 109.47045 * 330.00476 * 17 16 15 34 34 H 1.09000 * 109.46751 * 209.99781 * 17 16 15 35 35 H 1.08994 * 109.50352 * 57.67129 * 19 18 17 36 36 H 1.08995 * 109.50726 * 297.54609 * 19 18 17 37 37 H 1.09002 * 109.50646 * 176.78576 * 20 19 18 38 38 H 1.09003 * 109.50955 * 296.87129 * 20 19 18 39 39 H 1.09009 * 109.46928 * 298.66580 * 22 21 20 40 40 H 1.08998 * 109.54427 * 178.58164 * 22 21 20 41 41 H 1.09000 * 109.50473 * 302.32301 * 23 18 17 42 42 H 1.08995 * 109.50807 * 62.41268 * 23 18 17 43 43 H 1.07994 * 120.02915 * 179.74386 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5308 -4.8996 0.0001 12 6 2.2711 -6.0393 0.0007 13 6 3.6568 -5.9680 0.0013 14 6 4.4068 -7.1278 0.0014 15 6 3.7778 -8.3594 0.0003 16 6 2.3974 -8.4331 0.0003 17 6 1.7152 -9.7769 -0.0003 18 7 1.4935 -10.2140 1.3846 19 6 0.6246 -11.3990 1.4304 20 6 0.4688 -11.8551 2.8835 21 8 -0.0477 -10.7745 3.6651 22 6 0.7735 -9.6038 3.6428 23 6 0.9324 -9.1249 2.1973 24 6 1.6426 -7.2758 -0.0047 25 1 -0.4851 0.8400 -0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8720 -3.6042 0.8895 29 1 2.8720 -3.6043 -0.8904 30 1 4.1485 -5.0064 0.0016 31 1 5.4855 -7.0729 0.0014 32 1 4.3661 -9.2651 0.0000 33 1 2.3444 -10.5036 -0.5142 34 1 0.7572 -9.6978 -0.5141 35 1 1.0717 -12.2010 0.8431 36 1 -0.3539 -11.1489 1.0204 37 1 -0.2201 -12.6986 2.9283 38 1 1.4398 -12.1569 3.2763 39 1 1.7535 -9.8394 4.0580 40 1 0.3057 -8.8189 4.2369 41 1 1.6042 -8.2670 2.1699 42 1 -0.0409 -8.8380 1.7992 43 1 0.5642 -7.3340 -0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154499246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:17 Heat of formation + Delta-G solvation = -60.850263 kcal Electronic energy + Delta-G solvation = -22735.263540 eV Core-core repulsion = 19359.468914 eV Total energy + Delta-G solvation = -3375.794626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26960 -39.41034 -37.53039 -35.70587 -33.40627 -31.81529 -31.13624 -30.83513 -29.27618 -27.95359 -25.23989 -24.44536 -24.17729 -22.36179 -21.72652 -20.58400 -20.11736 -17.65197 -16.80836 -16.36880 -16.18649 -15.80933 -15.71030 -15.37886 -15.24508 -15.16515 -14.87736 -14.51306 -14.19222 -13.81197 -13.12163 -13.05728 -12.69815 -12.40759 -12.32900 -12.20824 -11.73257 -11.61342 -11.42032 -11.32152 -11.21331 -10.88296 -10.80179 -10.73772 -10.48683 -9.91071 -9.87349 -9.68752 -9.34067 -8.88153 -8.52348 -8.46717 -7.89283 -6.12445 -4.17456 1.35084 1.63636 3.27073 3.31567 3.33148 3.48336 3.66780 3.77481 4.01790 4.38381 4.53209 4.69317 4.77270 4.89740 4.92720 5.02313 5.03474 5.17677 5.23883 5.26305 5.31519 5.40122 5.43575 5.46669 5.54095 5.59674 5.74114 5.74889 5.79506 5.99743 6.02145 6.11640 6.47172 6.51868 6.61925 6.67587 6.70555 6.71016 6.91114 6.93829 7.47263 7.60907 7.78171 8.02210 8.21086 8.87909 9.47000 10.99080 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.002838 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.495545 B = 9865.052779 C =10549.823693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.316 6.316 12 C 0.145 3.855 13 C -0.209 4.209 14 C -0.080 4.080 15 C -0.150 4.150 16 C -0.053 4.053 17 C 0.097 3.903 18 N -0.530 5.530 19 C 0.016 3.984 20 C 0.064 3.936 21 O -0.387 6.387 22 C 0.064 3.936 23 C 0.012 3.988 24 C -0.157 4.157 25 H 0.264 0.736 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.045 0.955 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -23.295 2.582 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.009 4.009 11 O -0.229 6.229 12 C 0.098 3.902 13 C -0.228 4.228 14 C -0.099 4.099 15 C -0.169 4.169 16 C -0.054 4.054 17 C -0.030 4.030 18 N -0.256 5.256 19 C -0.112 4.112 20 C -0.013 4.013 21 O -0.306 6.306 22 C -0.013 4.013 23 C -0.115 4.115 24 C -0.177 4.177 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.063 0.937 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.574 -23.276 2.888 23.897 hybrid contribution 0.188 1.362 -0.612 1.505 sum 4.762 -21.914 2.276 22.541 Atomic orbital electron populations 1.69961 1.06118 1.27133 1.49540 1.24988 0.94903 0.99386 0.94859 0.86545 0.79507 0.82574 0.78735 1.20076 1.21088 1.20071 1.20928 0.93008 0.90219 1.52472 0.92414 1.19116 0.94154 0.88999 0.98848 1.23338 0.97091 0.80778 0.99658 1.86177 1.36566 1.13217 1.86950 1.19138 0.90108 0.87447 0.93479 1.21417 0.93187 0.99922 1.08262 1.20908 0.99495 0.91889 0.97564 1.20765 0.93568 0.97490 1.05050 1.19351 0.93666 0.93236 0.99139 1.21067 0.99133 0.93659 0.89093 1.62366 1.46785 1.05751 1.10656 1.22811 0.95857 0.94092 0.98466 1.22633 0.99668 0.89630 0.89338 1.87987 1.49249 1.23342 1.69999 1.22710 0.95441 0.87609 0.95563 1.22934 0.99494 0.95063 0.94058 1.20301 0.99993 0.89525 1.07854 0.92611 0.95427 0.95419 0.93111 0.93121 0.85193 0.86074 0.86247 0.89549 0.93659 0.89628 0.93816 0.88582 0.92329 0.92302 0.88268 0.88519 0.93693 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.07 1.39 4.68 37.16 0.17 1.56 16 11 O -0.32 -6.44 10.14 -19.43 -0.20 -6.64 16 12 C 0.15 2.48 6.69 -39.21 -0.26 2.21 16 13 C -0.21 -3.19 9.04 -39.44 -0.36 -3.54 16 14 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 15 C -0.15 -1.79 9.70 -39.56 -0.38 -2.17 16 16 C -0.05 -0.66 4.13 -104.64 -0.43 -1.09 16 17 C 0.10 0.99 5.43 -4.97 -0.03 0.96 16 18 N -0.53 -5.46 4.87 -235.75 -1.15 -6.61 16 19 C 0.02 0.14 5.63 -3.71 -0.02 0.11 16 20 C 0.06 0.54 7.01 37.21 0.26 0.80 16 21 O -0.39 -4.36 10.83 -35.23 -0.38 -4.74 16 22 C 0.06 0.66 7.01 37.21 0.26 0.93 16 23 C 0.01 0.14 4.66 -3.71 -0.02 0.12 16 24 C -0.16 -2.32 7.82 -39.43 -0.31 -2.62 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 29 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 30 H 0.13 1.96 6.30 -52.48 -0.33 1.63 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.05 0.46 8.02 -51.93 -0.42 0.04 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 1.22 5.93 -51.93 -0.31 0.91 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -30.54 348.87 -9.71 -40.25 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.89 Total: -1.03 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.07 Total: -16.97 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: -0.41 Total: -32.30 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.58 Total: -11.38 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.54 -9.71 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154499246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.600 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds