Wall clock time and date at job start Tue Mar 31 2020 08:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99736 * 2 1 4 4 H 1.48498 * 109.47401 * 239.99778 * 3 2 1 5 5 H 1.48500 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46975 * 120.00207 * 3 2 1 7 7 C 1.37879 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99604 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46948 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.46933 * 179.97438 * 10 9 7 12 12 C 1.35902 * 116.99654 * 180.02562 * 11 10 9 13 13 C 1.38756 * 120.05938 * 0.02562 * 12 11 10 14 14 C 1.38114 * 119.94723 * 180.02562 * 13 12 11 15 15 C 1.38292 * 120.05579 * 0.02608 * 14 13 12 16 16 C 1.38238 * 120.11109 * 359.95055 * 15 14 13 17 17 C 1.50703 * 119.97274 * 180.02562 * 16 15 14 18 18 N 1.46904 * 109.46855 * 90.00304 * 17 16 15 19 19 C 1.47015 * 110.99903 * 169.99949 * 18 17 16 20 20 C 1.53095 * 109.25739 * 177.60628 * 19 18 17 21 21 O 1.43020 * 109.29124 * 56.82758 * 20 19 18 22 22 C 1.43015 * 113.73974 * 301.39847 * 21 20 19 23 23 C 1.47016 * 110.99833 * 46.36654 * 18 17 16 24 24 C 1.38171 * 120.05685 * 0.28407 * 16 15 14 25 25 H 0.97002 * 120.00453 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46966 * 60.00399 * 9 7 2 27 27 H 1.09002 * 109.47145 * 300.00015 * 9 7 2 28 28 H 1.09003 * 109.46815 * 59.99899 * 10 9 7 29 29 H 1.08993 * 109.47134 * 300.00206 * 10 9 7 30 30 H 1.08003 * 120.02415 * 0.02562 * 13 12 11 31 31 H 1.08006 * 119.97494 * 179.97438 * 14 13 12 32 32 H 1.08000 * 119.94167 * 179.97438 * 15 14 13 33 33 H 1.08996 * 109.47045 * 330.00476 * 17 16 15 34 34 H 1.09000 * 109.46751 * 209.99781 * 17 16 15 35 35 H 1.08994 * 109.50352 * 57.67129 * 19 18 17 36 36 H 1.08995 * 109.50726 * 297.54609 * 19 18 17 37 37 H 1.09002 * 109.50646 * 176.78576 * 20 19 18 38 38 H 1.09003 * 109.50955 * 296.87129 * 20 19 18 39 39 H 1.09009 * 109.46928 * 298.66580 * 22 21 20 40 40 H 1.08998 * 109.54427 * 178.58164 * 22 21 20 41 41 H 1.09000 * 109.50473 * 302.32301 * 23 18 17 42 42 H 1.08995 * 109.50807 * 62.41268 * 23 18 17 43 43 H 1.07994 * 120.02915 * 179.74386 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5308 -4.8996 0.0001 12 6 2.2711 -6.0393 0.0007 13 6 3.6568 -5.9680 0.0013 14 6 4.4068 -7.1278 0.0014 15 6 3.7778 -8.3594 0.0003 16 6 2.3974 -8.4331 0.0003 17 6 1.7152 -9.7769 -0.0003 18 7 1.4935 -10.2140 1.3846 19 6 0.6246 -11.3990 1.4304 20 6 0.4688 -11.8551 2.8835 21 8 -0.0477 -10.7745 3.6651 22 6 0.7735 -9.6038 3.6428 23 6 0.9324 -9.1249 2.1973 24 6 1.6426 -7.2758 -0.0047 25 1 -0.4851 0.8400 -0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8720 -3.6042 0.8895 29 1 2.8720 -3.6043 -0.8904 30 1 4.1485 -5.0064 0.0016 31 1 5.4855 -7.0729 0.0014 32 1 4.3661 -9.2651 0.0000 33 1 2.3444 -10.5036 -0.5142 34 1 0.7572 -9.6978 -0.5141 35 1 1.0717 -12.2010 0.8431 36 1 -0.3539 -11.1489 1.0204 37 1 -0.2201 -12.6986 2.9283 38 1 1.4398 -12.1569 3.2763 39 1 1.7535 -9.8394 4.0580 40 1 0.3057 -8.8189 4.2369 41 1 1.6042 -8.2670 2.1699 42 1 -0.0409 -8.8380 1.7992 43 1 0.5642 -7.3340 -0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154499246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:14 Heat of formation + Delta-G solvation = -80.366647 kcal Electronic energy + Delta-G solvation = -22736.109834 eV Core-core repulsion = 19359.468914 eV Total energy + Delta-G solvation = -3376.640920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = -0.81 seconds Orbital eigenvalues (eV) -41.33308 -40.42063 -38.75058 -36.62945 -35.47660 -32.73459 -32.57117 -31.98856 -30.70400 -28.84835 -27.05147 -25.47261 -25.00613 -23.51925 -23.31573 -21.67314 -21.22639 -19.11432 -18.16018 -17.59320 -17.13190 -16.98948 -16.94805 -16.89161 -16.45983 -16.08260 -15.99181 -15.77459 -15.06159 -14.80947 -14.41644 -14.34818 -14.25098 -14.07125 -13.40142 -13.11962 -13.02019 -12.92135 -12.62133 -12.57772 -12.52778 -12.35974 -12.19037 -11.83451 -11.62291 -11.59472 -11.52629 -11.40751 -10.68248 -10.63259 -9.89525 -9.39911 -9.11962 -8.28272 -6.42436 0.28109 0.51252 1.39864 1.43868 1.51916 2.24792 2.48635 2.60260 2.90529 3.06110 3.06364 3.64876 3.87262 3.93418 4.00091 4.07663 4.17547 4.18031 4.24415 4.26613 4.28583 4.36378 4.43072 4.54462 4.59868 4.65370 4.71323 4.72373 4.77494 4.82193 4.90895 5.00071 5.07361 5.29240 5.39425 5.44062 5.50043 5.59943 5.65930 5.83601 5.86188 5.95772 6.05583 6.16999 6.54285 6.72278 7.27946 8.84730 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.002838 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.495545 B = 9865.052779 C =10549.823693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.029 3.971 10 C 0.086 3.914 11 O -0.343 6.343 12 C 0.107 3.893 13 C -0.220 4.220 14 C -0.076 4.076 15 C -0.138 4.138 16 C -0.048 4.048 17 C 0.099 3.901 18 N -0.531 5.531 19 C 0.016 3.984 20 C 0.059 3.941 21 O -0.407 6.407 22 C 0.065 3.935 23 C 0.017 3.983 24 C -0.163 4.163 25 H 0.267 0.733 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.113 0.887 34 H 0.043 0.957 35 H 0.111 0.889 36 H 0.035 0.965 37 H 0.117 0.883 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.028 0.972 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.215 -25.123 2.487 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.089 0.911 9 C -0.008 4.008 10 C 0.011 3.989 11 O -0.258 6.258 12 C 0.062 3.938 13 C -0.239 4.239 14 C -0.094 4.094 15 C -0.156 4.156 16 C -0.049 4.049 17 C -0.028 4.028 18 N -0.256 5.256 19 C -0.112 4.112 20 C -0.017 4.017 21 O -0.326 6.326 22 C -0.012 4.012 23 C -0.112 4.112 24 C -0.183 4.183 25 H 0.076 0.924 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.131 0.869 34 H 0.061 0.939 35 H 0.129 0.871 36 H 0.054 0.946 37 H 0.135 0.865 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.121 -25.141 2.791 26.279 hybrid contribution -0.621 1.734 -0.583 1.932 sum 6.500 -23.407 2.208 24.393 Atomic orbital electron populations 1.70113 1.08101 1.28343 1.50520 1.26053 0.95813 1.03731 0.94082 0.85336 0.78129 0.77128 0.79482 1.18767 1.20770 1.18773 1.21370 0.93847 0.91001 1.52326 0.91053 1.18954 0.94538 0.91449 0.95888 1.22850 0.95353 0.80177 1.00474 1.86084 1.37568 1.13829 1.88323 1.19452 0.91131 0.86697 0.96534 1.21519 0.92443 1.01067 1.08839 1.21267 1.00955 0.91099 0.96088 1.21181 0.93384 0.98459 1.02600 1.19611 0.94156 0.93353 0.97747 1.21145 0.99388 0.92917 0.89343 1.62430 1.47046 1.05723 1.10373 1.22910 0.95408 0.93893 0.98967 1.22861 1.00621 0.89349 0.88872 1.87963 1.49970 1.24008 1.70696 1.22697 0.95744 0.87756 0.94962 1.22817 0.98235 0.95140 0.94983 1.20385 0.99919 0.89749 1.08231 0.92406 0.98463 0.98442 0.92180 0.92202 0.85483 0.82969 0.83001 0.86915 0.93878 0.87053 0.94618 0.86510 0.91610 0.91656 0.88137 0.90105 0.95345 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.98 43.51 29.54 68.60 2.03 45.54 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.55 -31.08 9.11 25.60 0.23 -30.84 16 8 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 9 C 0.03 1.60 5.34 29.85 0.16 1.76 16 10 C 0.09 3.79 4.68 71.98 0.34 4.13 16 11 O -0.34 -14.81 10.14 -92.44 -0.94 -15.75 16 12 C 0.11 3.76 6.69 22.51 0.15 3.91 16 13 C -0.22 -6.58 9.04 22.36 0.20 -6.37 16 14 C -0.08 -1.73 10.04 22.25 0.22 -1.51 16 15 C -0.14 -2.83 9.70 22.28 0.22 -2.61 16 16 C -0.05 -1.11 4.13 -19.88 -0.08 -1.20 16 17 C 0.10 1.77 5.43 85.56 0.46 2.24 16 18 N -0.53 -9.85 4.87 -899.79 -4.38 -14.23 16 19 C 0.02 0.23 5.63 86.31 0.49 0.72 16 20 C 0.06 0.87 7.01 72.01 0.50 1.38 16 21 O -0.41 -8.76 10.83 -148.98 -1.61 -10.37 16 22 C 0.07 1.33 7.01 72.01 0.50 1.84 16 23 C 0.02 0.37 4.66 86.31 0.40 0.77 16 24 C -0.16 -4.90 7.82 22.37 0.17 -4.73 16 25 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.06 2.50 7.66 -2.39 -0.02 2.48 16 29 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 30 H 0.13 3.79 6.30 -2.91 -0.02 3.77 16 31 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.11 1.48 8.08 -2.39 -0.02 1.46 16 34 H 0.04 0.81 8.02 -2.39 -0.02 0.79 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.06 5.93 -2.39 -0.01 2.04 16 42 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -68.32 348.87 0.79 -67.53 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.97 Total: 14.02 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.44 Total: -29.95 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -4.10 Total: -71.02 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -2.55 Total: -26.12 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.32 0.79 -67.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154499246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.835 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.81 seconds