Wall clock time and date at job start Tue Mar 31 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46882 * 2 1 4 4 H 1.09000 * 109.47505 * 55.00422 * 3 2 1 5 5 C 1.53008 * 109.47029 * 174.99944 * 3 2 1 6 6 C 1.47195 * 109.47179 * 184.99991 * 5 3 2 7 7 N 4.86392 * 126.40308 * 4.97540 * 2 1 3 8 8 N 1.46501 * 109.47503 * 294.99803 * 3 2 1 9 9 C 1.34777 * 119.99677 * 85.00050 * 8 3 2 10 10 O 1.21586 * 120.00074 * 0.02562 * 9 8 3 11 11 N 1.34777 * 119.99732 * 180.02562 * 9 8 3 12 12 C 1.40198 * 119.99611 * 180.02562 * 11 9 8 13 13 C 1.40395 * 125.97441 * 359.97438 * 12 11 9 14 14 C 1.35243 * 107.86535 * 179.76148 * 13 12 11 15 15 N 1.34960 * 107.86064 * 0.42509 * 14 13 12 16 16 C 1.46500 * 125.97985 * 179.83521 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71356 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31213 * 125.96940 * 180.02562 * 12 11 9 26 26 H 1.09006 * 109.47236 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47334 * 300.00228 * 1 2 3 28 28 H 1.09003 * 109.47283 * 59.99773 * 1 2 3 29 29 H 1.08996 * 109.46860 * 240.00079 * 2 1 3 30 30 H 1.08995 * 109.46992 * 120.00256 * 2 1 3 31 31 H 1.09003 * 109.46695 * 305.00346 * 5 3 2 32 32 H 1.09005 * 109.46958 * 64.99561 * 5 3 2 33 33 H 0.96998 * 119.99765 * 265.00770 * 8 3 2 34 34 H 0.96996 * 119.99913 * 359.97438 * 11 9 8 35 35 H 1.07994 * 126.06763 * 0.02745 * 13 12 11 36 36 H 1.08007 * 126.06985 * 180.26350 * 14 13 12 37 37 H 1.09004 * 109.47078 * 4.72118 * 16 15 14 38 38 H 1.08993 * 109.47364 * 244.71890 * 16 15 14 39 39 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 6 4.0455 2.8304 0.2464 7 7 4.4166 3.9000 0.3395 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3413 2.6326 -0.4317 11 7 0.0784 3.2666 -2.5187 12 6 -1.1877 3.8567 -2.6382 13 6 -2.1778 3.8934 -1.6435 14 6 -3.2459 4.5540 -2.1453 15 7 -2.9516 4.9149 -3.4120 16 6 -3.8322 5.6484 -4.3246 17 6 -3.1253 6.8836 -4.8205 18 1 -2.1204 7.1002 -4.4893 19 6 -3.7613 7.7369 -5.6969 20 7 -4.9830 7.4703 -6.1043 21 14 -2.8848 9.2675 -6.3121 22 1 -3.7752 10.0079 -7.2418 23 1 -2.5397 10.1374 -5.1591 24 1 -1.6428 8.8739 -7.0245 25 7 -1.6548 4.4705 -3.6997 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8570 0.8800 1.0113 32 1 4.0030 0.9835 -0.7596 33 1 2.2719 2.1231 -1.9978 34 1 0.6979 3.2923 -3.2646 35 1 -2.0987 3.4728 -0.6520 36 1 -4.1712 4.7546 -1.6256 37 1 -4.7418 5.9373 -3.7980 38 1 -4.0891 5.0121 -5.1714 39 1 -5.4381 6.6754 -5.7851 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156070204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:38 Heat of formation + Delta-G solvation = 73.645676 kcal Electronic energy + Delta-G solvation = -22408.004164 eV Core-core repulsion = 18966.794127 eV Total energy + Delta-G solvation = -3441.210037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90682 -39.94353 -37.66127 -36.09235 -34.72528 -33.73617 -32.46536 -31.03378 -30.46050 -29.34069 -26.27866 -24.94243 -23.25789 -22.26393 -21.06897 -20.60127 -19.92727 -18.32979 -17.77930 -17.17010 -16.95906 -16.32546 -15.76113 -15.02774 -14.73700 -14.50634 -14.34577 -14.04399 -13.78161 -13.65156 -13.28255 -13.16704 -12.95781 -12.48318 -12.39126 -12.19951 -11.99539 -11.82218 -11.67742 -11.38331 -11.16912 -11.05107 -10.79743 -10.41749 -10.15435 -10.11825 -9.72536 -9.32192 -8.97932 -8.57271 -8.17493 -7.47133 -6.57229 -4.31200 2.25143 2.41208 2.47260 2.59086 3.03967 3.38694 3.40215 3.46203 3.53691 3.59870 3.77664 4.19734 4.25606 4.42105 4.59403 4.71529 4.91687 4.98132 5.16348 5.18094 5.37606 5.49425 5.60705 5.71803 5.80985 5.95865 6.13487 6.20664 6.37544 6.42388 6.46982 6.65068 6.77444 6.93814 7.23357 7.42383 7.63359 7.85543 7.87799 8.35717 8.52581 8.57054 8.64418 9.36974 10.80318 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.003199 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.464046 B = 8751.527410 C = 9670.035966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.100 0.900 5 C -0.034 4.034 6 C 0.198 3.802 7 N -0.424 5.424 8 N -0.743 5.743 9 C 0.716 3.284 10 O -0.559 6.559 11 N -0.644 5.644 12 C 0.277 3.723 13 C -0.283 4.283 14 C 0.049 3.951 15 N -0.319 5.319 16 C 0.250 3.750 17 C -0.608 4.608 18 H 0.063 0.937 19 C 0.023 3.977 20 N -0.905 5.905 21 Si 1.076 2.924 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.285 1.285 25 N -0.305 5.305 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.397 0.603 34 H 0.406 0.594 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.558 -17.670 11.865 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.061 3.939 4 H 0.119 0.881 5 C -0.074 4.074 6 C -0.120 4.120 7 N -0.101 5.101 8 N -0.400 5.400 9 C 0.415 3.585 10 O -0.434 6.434 11 N -0.294 5.294 12 C 0.023 3.977 13 C -0.314 4.314 14 C -0.100 4.100 15 N -0.101 5.101 16 C 0.132 3.868 17 C -0.646 4.646 18 H 0.081 0.919 19 C -0.182 4.182 20 N -0.541 5.541 21 Si 0.903 3.097 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.212 1.212 25 N -0.136 5.136 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.231 0.769 34 H 0.241 0.759 35 H 0.180 0.820 36 H 0.184 0.816 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.379 -14.342 10.625 22.920 hybrid contribution 0.472 -1.948 0.950 2.218 sum 14.851 -16.290 11.574 24.897 Atomic orbital electron populations 1.21798 0.94114 1.00690 1.03804 1.21967 0.97935 0.94589 1.02571 1.20879 0.90993 0.94467 0.87538 0.88150 1.19675 0.95513 0.85602 1.06613 1.29045 0.93907 0.95177 0.93910 1.81295 1.08617 1.12029 1.08140 1.45118 1.16012 1.61697 1.17189 1.15531 0.82219 0.78179 0.82558 1.90881 1.50855 1.63422 1.38283 1.41394 1.14595 1.57815 1.15547 1.18777 0.86168 0.98357 0.94380 1.21513 0.93323 1.13887 1.02679 1.22559 1.00633 0.99687 0.87140 1.48751 1.09844 1.40884 1.10577 1.19740 0.87645 0.91548 0.87890 1.22113 1.03555 1.07428 1.31504 0.91867 1.25916 0.95972 1.02502 0.93780 1.70852 1.12076 1.28039 1.43107 0.83426 0.75116 0.74644 0.76487 1.20513 1.21237 1.21151 1.77346 0.95321 1.20098 1.20869 0.93578 0.91893 0.91962 0.91383 0.90632 0.85507 0.86711 0.76908 0.75904 0.81965 0.81598 0.93650 0.94820 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.51 37.16 0.32 -0.99 16 2 C -0.13 -0.67 5.61 -26.73 -0.15 -0.82 16 3 C 0.17 0.98 2.23 -67.93 -0.15 0.83 16 4 H 0.10 0.82 7.57 -51.93 -0.39 0.43 16 5 C -0.03 -0.09 5.25 -29.52 -0.16 -0.25 16 6 C 0.20 1.56 15.14 -20.76 -0.31 1.24 16 7 N -0.42 -5.15 18.54 42.15 0.78 -4.37 16 8 N -0.74 -5.98 4.73 -58.67 -0.28 -6.26 16 9 C 0.72 9.45 7.10 -86.92 -0.62 8.84 16 10 O -0.56 -8.91 10.61 5.29 0.06 -8.85 16 11 N -0.64 -9.64 5.46 -15.51 -0.08 -9.73 16 12 C 0.28 5.54 8.11 -154.36 -1.25 4.29 16 13 C -0.28 -5.57 9.61 -39.84 -0.38 -5.95 16 14 C 0.05 0.99 11.44 -17.24 -0.20 0.80 16 15 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 16 C 0.25 6.38 5.57 -5.19 -0.03 6.35 16 17 C -0.61 -17.29 9.24 -34.44 -0.32 -17.61 16 18 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 19 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 20 N -0.91 -26.54 13.65 55.43 0.76 -25.78 16 21 Si 1.08 25.21 29.90 -169.99 -5.08 20.13 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 N -0.31 -7.10 12.42 31.44 0.39 -6.71 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 28 H 0.06 0.73 5.65 -51.93 -0.29 0.44 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.13 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.11 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.40 2.17 8.62 -40.82 -0.35 1.81 16 34 H 0.41 4.98 8.84 -40.82 -0.36 4.62 16 35 H 0.16 3.08 5.91 -52.49 -0.31 2.77 16 36 H 0.17 2.73 8.06 -52.48 -0.42 2.31 16 37 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 38 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 39 H 0.27 7.64 7.22 -40.82 -0.29 7.35 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -36.83 337.73 -6.93 -43.76 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.98 Total: 3.18 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.35 Total: -2.72 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 1.34 Total: -60.59 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.06 Total: -8.85 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.83 -6.93 -43.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156070204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.409 kcal (2) G-P(sol) polarization free energy of solvation -36.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds