Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46882 * 2 1 4 4 H 1.09000 * 109.47505 * 55.00422 * 3 2 1 5 5 C 1.53008 * 109.47029 * 174.99944 * 3 2 1 6 6 C 1.47195 * 109.47179 * 184.99991 * 5 3 2 7 7 N 4.86392 * 126.40308 * 4.97540 * 2 1 3 8 8 N 1.46501 * 109.47503 * 294.99803 * 3 2 1 9 9 C 1.34777 * 119.99677 * 85.00050 * 8 3 2 10 10 O 1.21586 * 120.00074 * 0.02562 * 9 8 3 11 11 N 1.34777 * 119.99732 * 180.02562 * 9 8 3 12 12 C 1.40198 * 119.99611 * 180.02562 * 11 9 8 13 13 C 1.40395 * 125.97441 * 359.97438 * 12 11 9 14 14 C 1.35243 * 107.86535 * 179.76148 * 13 12 11 15 15 N 1.34960 * 107.86064 * 0.42509 * 14 13 12 16 16 C 1.46500 * 125.97985 * 179.83521 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71356 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31213 * 125.96940 * 180.02562 * 12 11 9 26 26 H 1.09006 * 109.47236 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47334 * 300.00228 * 1 2 3 28 28 H 1.09003 * 109.47283 * 59.99773 * 1 2 3 29 29 H 1.08996 * 109.46860 * 240.00079 * 2 1 3 30 30 H 1.08995 * 109.46992 * 120.00256 * 2 1 3 31 31 H 1.09003 * 109.46695 * 305.00346 * 5 3 2 32 32 H 1.09005 * 109.46958 * 64.99561 * 5 3 2 33 33 H 0.96998 * 119.99765 * 265.00770 * 8 3 2 34 34 H 0.96996 * 119.99913 * 359.97438 * 11 9 8 35 35 H 1.07994 * 126.06763 * 0.02745 * 13 12 11 36 36 H 1.08007 * 126.06985 * 180.26350 * 14 13 12 37 37 H 1.09004 * 109.47078 * 4.72118 * 16 15 14 38 38 H 1.08993 * 109.47364 * 244.71890 * 16 15 14 39 39 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 6 4.0455 2.8304 0.2464 7 7 4.4166 3.9000 0.3395 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3413 2.6326 -0.4317 11 7 0.0784 3.2666 -2.5187 12 6 -1.1877 3.8567 -2.6382 13 6 -2.1778 3.8934 -1.6435 14 6 -3.2459 4.5540 -2.1453 15 7 -2.9516 4.9149 -3.4120 16 6 -3.8322 5.6484 -4.3246 17 6 -3.1253 6.8836 -4.8205 18 1 -2.1204 7.1002 -4.4893 19 6 -3.7613 7.7369 -5.6969 20 7 -4.9830 7.4703 -6.1043 21 14 -2.8848 9.2675 -6.3121 22 1 -3.7752 10.0079 -7.2418 23 1 -2.5397 10.1374 -5.1591 24 1 -1.6428 8.8739 -7.0245 25 7 -1.6548 4.4705 -3.6997 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8570 0.8800 1.0113 32 1 4.0030 0.9835 -0.7596 33 1 2.2719 2.1231 -1.9978 34 1 0.6979 3.2923 -3.2646 35 1 -2.0987 3.4728 -0.6520 36 1 -4.1712 4.7546 -1.6256 37 1 -4.7418 5.9373 -3.7980 38 1 -4.0891 5.0121 -5.1714 39 1 -5.4381 6.6754 -5.7851 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156070204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = 47.092327 kcal Electronic energy + Delta-G solvation = -22409.155603 eV Core-core repulsion = 18966.794127 eV Total energy + Delta-G solvation = -3442.361476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.30670 -41.13088 -38.40597 -36.91298 -36.19904 -35.50871 -33.48690 -32.25056 -31.34617 -30.97246 -28.15242 -25.70223 -25.03476 -23.44948 -22.25695 -21.61699 -21.31087 -19.39032 -19.20948 -18.50731 -18.08578 -17.42055 -16.78078 -16.52248 -15.91425 -15.64290 -15.61351 -15.10054 -14.99888 -14.88201 -14.58843 -14.05178 -13.91317 -13.85250 -13.69989 -13.65442 -13.23486 -12.97917 -12.63360 -12.44139 -12.35939 -11.97074 -11.96831 -11.85491 -11.68362 -11.53219 -11.04150 -10.98805 -10.70737 -10.09912 -9.79392 -9.13447 -8.77674 -6.57086 1.00732 1.11861 1.49430 1.55739 1.68784 1.77466 1.81885 1.89188 2.06550 2.41872 2.47124 2.99711 3.06934 3.18085 3.81561 3.88167 4.14880 4.23676 4.26905 4.56391 4.59251 4.69189 4.71620 4.77907 4.82394 4.87398 4.99045 5.11157 5.11455 5.25684 5.32111 5.54102 5.62790 5.66283 5.84206 5.86011 5.97270 6.26978 6.41706 6.67447 6.73002 7.11060 7.18849 7.48498 8.57151 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.003199 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.464046 B = 8751.527410 C = 9670.035966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.164 3.836 4 H 0.076 0.924 5 C -0.023 4.023 6 C 0.228 3.772 7 N -0.510 5.510 8 N -0.723 5.723 9 C 0.711 3.289 10 O -0.588 6.588 11 N -0.641 5.641 12 C 0.289 3.711 13 C -0.287 4.287 14 C 0.052 3.948 15 N -0.346 5.346 16 C 0.261 3.739 17 C -0.623 4.623 18 H 0.043 0.957 19 C -0.018 4.018 20 N -0.923 5.923 21 Si 1.119 2.881 22 H -0.273 1.273 23 H -0.273 1.273 24 H -0.275 1.275 25 N -0.351 5.351 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.171 0.829 32 H 0.156 0.844 33 H 0.413 0.587 34 H 0.418 0.582 35 H 0.171 0.829 36 H 0.199 0.801 37 H 0.053 0.947 38 H 0.017 0.983 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.676 -19.470 12.705 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.058 3.942 4 H 0.094 0.906 5 C -0.063 4.063 6 C -0.089 4.089 7 N -0.188 5.188 8 N -0.381 5.381 9 C 0.411 3.589 10 O -0.465 6.465 11 N -0.293 5.293 12 C 0.032 3.968 13 C -0.318 4.318 14 C -0.096 4.096 15 N -0.128 5.128 16 C 0.141 3.859 17 C -0.661 4.661 18 H 0.062 0.938 19 C -0.218 4.218 20 N -0.559 5.559 21 Si 0.940 3.060 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.201 1.201 25 N -0.182 5.182 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.188 0.812 32 H 0.174 0.826 33 H 0.250 0.750 34 H 0.255 0.745 35 H 0.188 0.812 36 H 0.216 0.784 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.557 -16.199 11.487 25.855 hybrid contribution -0.152 -1.573 0.811 1.776 sum 16.406 -17.771 12.298 27.133 Atomic orbital electron populations 1.21764 0.97371 1.00255 1.01120 1.21935 0.94751 0.94024 1.05294 1.21083 0.93152 0.94589 0.85369 0.90626 1.20059 0.92576 0.83063 1.10551 1.29996 0.91833 0.95682 0.91343 1.81332 1.11395 1.14776 1.11252 1.45123 1.14160 1.60112 1.18701 1.15770 0.83492 0.78114 0.81530 1.90853 1.52206 1.64435 1.39019 1.41492 1.13178 1.57720 1.16878 1.19110 0.87693 0.96582 0.93368 1.21708 0.93278 1.13862 1.02941 1.23171 1.01955 0.98466 0.85991 1.48522 1.10256 1.42536 1.11446 1.19389 0.88071 0.90463 0.87958 1.22299 1.02937 1.08833 1.31983 0.93821 1.27260 0.95961 1.05002 0.93575 1.70944 1.12815 1.28216 1.43915 0.82889 0.74579 0.71843 0.76693 1.19811 1.19814 1.20073 1.77255 0.95847 1.22338 1.22749 0.92861 0.94016 0.95221 0.89192 0.87265 0.81193 0.82601 0.75027 0.74493 0.81157 0.78380 0.92921 0.96551 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.51 71.98 0.61 -1.81 16 2 C -0.12 -0.73 5.61 30.59 0.17 -0.56 16 3 C 0.16 1.38 2.23 44.99 0.10 1.48 16 4 H 0.08 1.09 7.57 -2.39 -0.02 1.08 16 5 C -0.02 -0.01 5.25 28.79 0.15 0.14 16 6 C 0.23 3.03 15.14 89.44 1.35 4.38 16 7 N -0.51 -12.09 18.54 20.00 0.37 -11.72 16 8 N -0.72 -10.00 4.73 -457.80 -2.17 -12.17 16 9 C 0.71 18.24 7.10 179.05 1.27 19.51 16 10 O -0.59 -18.68 10.61 -3.99 -0.04 -18.73 16 11 N -0.64 -18.98 5.46 -321.23 -1.75 -20.74 16 12 C 0.29 11.62 8.11 133.31 1.08 12.71 16 13 C -0.29 -11.33 9.61 22.10 0.21 -11.12 16 14 C 0.05 2.10 11.44 83.52 0.96 3.06 16 15 N -0.35 -16.62 3.67 -351.84 -1.29 -17.91 16 16 C 0.26 13.68 5.57 85.64 0.48 14.15 16 17 C -0.62 -36.16 9.24 25.60 0.24 -35.93 16 18 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 19 C -0.02 -1.04 5.46 84.65 0.46 -0.58 16 20 N -0.92 -54.61 13.65 21.45 0.29 -54.32 16 21 Si 1.12 50.63 29.90 68.60 2.05 52.68 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 N -0.35 -16.68 12.42 -54.44 -0.68 -17.36 16 26 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 27 H 0.04 0.84 7.84 -2.38 -0.02 0.82 16 28 H 0.03 0.67 5.65 -2.39 -0.01 0.66 16 29 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.17 -1.15 8.14 -2.39 -0.02 -1.17 16 32 H 0.16 -1.00 8.14 -2.38 -0.02 -1.02 16 33 H 0.41 3.23 8.62 -92.71 -0.80 2.43 16 34 H 0.42 9.99 8.84 -92.71 -0.82 9.17 16 35 H 0.17 6.47 5.91 -2.91 -0.02 6.46 16 36 H 0.20 6.35 8.06 -2.91 -0.02 6.33 16 37 H 0.05 2.65 7.94 -2.39 -0.02 2.63 16 38 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 39 H 0.26 15.27 7.22 -92.71 -0.67 14.60 16 Total: -1.00 -85.25 337.73 3.46 -81.79 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -0.42 Total: 13.02 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 7.09 Total: 5.44 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -5.22 Total: -134.21 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.04 Total: -18.73 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.68 kcal Total: -85.25 3.46 -81.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156070204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.885 kcal (2) G-P(sol) polarization free energy of solvation -85.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds