Wall clock time and date at job start Tue Mar 31 2020 06:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99502 * 2 1 4 4 C 1.52998 * 109.47192 * 125.00647 * 3 2 1 5 5 C 1.52996 * 109.47438 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47207 * 179.97438 * 5 4 3 7 7 C 1.40009 * 120.00183 * 179.97438 * 6 5 4 8 8 C 1.38645 * 120.09567 * 359.97438 * 7 6 5 9 9 C 1.38283 * 120.00346 * 179.97438 * 8 7 6 10 10 C 1.38270 * 120.20436 * 0.05011 * 9 8 7 11 11 C 1.38242 * 120.19694 * 359.97438 * 10 9 8 12 12 C 1.38729 * 119.99416 * 359.67540 * 11 10 9 13 13 S 1.76196 * 120.10405 * 180.32425 * 12 11 10 14 14 C 1.81398 * 103.00079 * 354.36010 * 13 12 11 15 15 H 1.09002 * 109.47130 * 49.52110 * 14 13 12 16 16 C 1.53005 * 109.46894 * 289.52331 * 14 13 12 17 17 C 1.50703 * 109.47326 * 169.52547 * 14 13 12 18 18 H 1.07995 * 119.99674 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99944 * 180.02562 * 17 14 13 20 20 N 1.31513 * 120.00079 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99752 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47467 * 59.99985 * 21 19 17 23 23 H 1.48501 * 109.46996 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47091 * 299.99367 * 21 19 17 25 25 H 1.07996 * 120.00449 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.99578 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99995 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47393 * 5.00160 * 3 2 1 29 29 H 1.09003 * 109.46862 * 245.00302 * 3 2 1 30 30 H 1.08994 * 109.47350 * 59.99486 * 4 3 2 31 31 H 1.09003 * 109.46935 * 299.99610 * 4 3 2 32 32 H 1.09003 * 109.46806 * 299.99771 * 5 4 3 33 33 H 1.09001 * 109.47200 * 59.99880 * 5 4 3 34 34 H 0.96998 * 120.00317 * 0.02562 * 6 5 4 35 35 H 1.08005 * 119.99607 * 359.97438 * 8 7 6 36 36 H 1.08003 * 119.89969 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.89938 * 179.97438 * 10 9 8 38 38 H 1.08003 * 120.00384 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.46549 * 173.72783 * 16 14 13 40 40 H 1.08993 * 109.46981 * 293.72952 * 16 14 13 41 41 H 1.08997 * 109.47050 * 53.73506 * 16 14 13 42 42 H 0.96997 * 120.00186 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.8004 2.6579 1.1812 6 7 4.7303 2.6850 2.3129 7 6 5.5463 3.8033 2.5220 8 6 5.4763 4.8861 1.6589 9 6 6.2827 5.9899 1.8675 10 6 7.1612 6.0179 2.9349 11 6 7.2382 4.9426 3.8003 12 6 6.4278 3.8341 3.6030 13 16 6.5175 2.4656 4.7093 14 6 7.9008 2.9091 5.7957 15 1 7.7642 3.9270 6.1608 16 6 9.2126 2.8197 5.0133 17 6 7.9469 1.9583 6.9640 18 1 7.2168 1.1667 7.0450 19 6 8.9206 2.0997 7.9298 20 7 9.8094 3.0640 7.8314 21 14 8.9781 0.9206 9.3776 22 1 9.1653 -0.4659 8.8797 23 1 10.1105 1.2837 10.2670 24 1 7.7047 1.0063 10.1367 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6211 1.4027 -0.9314 30 1 3.7400 0.5067 1.0919 31 1 2.4773 1.2356 2.1130 32 1 4.3582 2.7550 0.2497 33 1 3.0957 3.4847 1.2706 34 1 4.7813 1.9278 2.9170 35 1 4.7919 4.8675 0.8236 36 1 6.2265 6.8327 1.1943 37 1 7.7890 6.8823 3.0929 38 1 7.9258 4.9676 4.6328 39 1 10.0300 3.1921 5.6309 40 1 9.4048 1.7813 4.7437 41 1 9.1376 3.4223 4.1081 42 1 10.4946 3.1632 8.5107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157183847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:17 Heat of formation + Delta-G solvation = 24.819995 kcal Electronic energy + Delta-G solvation = -20007.991614 eV Core-core repulsion = 17078.664800 eV Total energy + Delta-G solvation = -2929.326814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.96892 -36.82356 -34.94060 -34.06783 -31.62823 -31.00110 -29.86264 -28.45508 -25.50458 -25.27262 -22.85552 -21.88986 -21.19540 -20.84002 -20.00692 -17.58978 -16.27480 -16.11562 -16.00882 -15.72351 -15.04190 -14.78598 -14.21806 -13.94888 -13.66482 -13.44536 -13.30491 -13.24297 -12.59574 -12.50771 -12.03363 -11.88143 -11.80884 -11.59606 -11.17141 -11.08914 -11.00047 -10.98060 -10.88994 -10.55430 -10.38227 -9.92987 -9.78380 -9.61772 -9.38156 -8.98314 -8.84941 -8.47448 -7.42290 -6.27271 -6.18980 -4.27529 1.79367 1.99919 2.03201 2.63362 3.25383 3.29170 3.33080 3.59295 3.83968 4.26838 4.32003 4.52007 4.70860 4.95261 5.05270 5.13246 5.13871 5.28782 5.36691 5.44055 5.48423 5.57103 5.63573 5.71771 5.93557 5.94240 5.98542 6.13293 6.34292 6.36923 6.48774 6.58225 6.63864 6.78162 6.80050 6.83933 7.03402 7.23535 7.38380 7.63406 7.65917 7.79971 8.00888 8.03888 8.70935 9.36157 10.87358 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003708 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.411109 B = 7549.760731 C = 9224.060968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.090 4.090 4 C -0.128 4.128 5 C 0.129 3.871 6 N -0.747 5.747 7 C 0.222 3.778 8 C -0.191 4.191 9 C -0.095 4.095 10 C -0.161 4.161 11 C -0.088 4.088 12 C -0.132 4.132 13 S -0.185 6.185 14 C 0.103 3.897 15 H 0.050 0.950 16 C -0.138 4.138 17 C -0.511 4.511 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.887 5.887 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.404 0.596 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.020 0.980 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 0.302 -14.680 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.128 4.128 4 C -0.166 4.166 5 C 0.004 3.996 6 N -0.379 5.379 7 C 0.114 3.886 8 C -0.215 4.215 9 C -0.116 4.116 10 C -0.183 4.183 11 C -0.113 4.113 12 C -0.249 4.249 13 S 0.060 5.940 14 C -0.025 4.025 15 H 0.068 0.932 16 C -0.198 4.198 17 C -0.551 4.551 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.524 5.524 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.375 -0.687 -14.606 19.156 hybrid contribution 0.883 0.273 0.934 1.314 sum -11.491 -0.414 -13.672 17.865 Atomic orbital electron populations 1.23859 0.95986 1.01820 1.01721 1.22970 0.96045 0.98562 0.99378 1.20670 0.98030 0.95574 0.98528 1.21712 0.98221 0.97528 0.99108 1.21243 0.91467 0.97296 0.89550 1.44724 1.42734 1.18581 1.31865 1.17314 0.90742 0.87801 0.92712 1.20407 1.04975 0.94494 1.01638 1.20749 0.96075 0.97217 0.97581 1.20793 1.01629 0.98879 0.97000 1.21242 0.98231 0.92237 0.99605 1.21429 1.02604 1.00563 1.00304 1.84874 1.48649 1.25975 1.34462 1.21021 0.88474 1.00154 0.92823 0.93237 1.22082 1.00360 0.99993 0.97365 1.20608 1.14612 1.14532 1.05322 0.91627 1.24884 0.94846 0.95646 0.97951 1.69870 1.16372 1.31171 1.35010 0.86425 0.77769 0.80979 0.81561 1.19982 1.21044 1.19953 0.88613 0.88588 0.87328 0.91268 0.90716 0.91024 0.91066 0.92638 0.92675 0.75937 0.86650 0.86828 0.86744 0.84978 0.89242 0.94102 0.96153 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 14.32 29.01 0.42 -1.05 16 2 C -0.15 -1.19 9.52 -36.03 -0.34 -1.54 16 3 C -0.09 -0.70 5.66 -27.88 -0.16 -0.86 16 4 C -0.13 -1.19 5.31 -26.73 -0.14 -1.33 16 5 C 0.13 1.42 4.92 -4.04 -0.02 1.40 16 6 N -0.75 -11.13 5.68 -58.45 -0.33 -11.46 16 7 C 0.22 3.83 6.66 -83.49 -0.56 3.27 16 8 C -0.19 -2.88 9.31 -39.41 -0.37 -3.25 16 9 C -0.09 -1.39 10.04 -39.55 -0.40 -1.79 16 10 C -0.16 -2.65 10.04 -39.57 -0.40 -3.05 16 11 C -0.09 -1.71 8.06 -39.40 -0.32 -2.03 16 12 C -0.13 -2.63 5.99 -38.92 -0.23 -2.86 16 13 S -0.19 -4.06 19.75 -107.50 -2.12 -6.18 16 14 C 0.10 2.57 1.97 -27.88 -0.06 2.51 16 15 H 0.05 1.33 6.83 -51.92 -0.35 0.97 16 16 C -0.14 -3.33 8.38 37.16 0.31 -3.02 16 17 C -0.51 -13.89 8.58 -34.44 -0.30 -14.19 16 18 H 0.07 1.79 7.71 -52.49 -0.40 1.39 16 19 C 0.07 1.91 5.30 -17.82 -0.09 1.81 16 20 N -0.89 -24.42 11.39 55.43 0.63 -23.79 16 21 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.10 0.66 7.84 -52.49 -0.41 0.24 16 26 H 0.10 0.62 8.06 -52.48 -0.42 0.20 16 27 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 33 H 0.06 0.58 7.96 -51.93 -0.41 0.17 16 34 H 0.40 6.33 7.02 -40.82 -0.29 6.04 16 35 H 0.12 1.45 6.74 -52.48 -0.35 1.09 16 36 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.13 2.75 4.99 -52.48 -0.26 2.49 16 39 H 0.09 2.30 6.27 -51.93 -0.33 1.98 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.44 6.16 -51.93 -0.32 0.12 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -28.07 352.09 -10.65 -38.72 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.47 Total: 7.49 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -2.65 Total: -25.94 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.30 Total: -35.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -2.12 Total: -6.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.07 -10.65 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157183847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.541 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds