Wall clock time and date at job start Tue Mar 31 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99502 * 2 1 4 4 C 1.52998 * 109.47192 * 125.00647 * 3 2 1 5 5 C 1.52996 * 109.47438 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47207 * 179.97438 * 5 4 3 7 7 C 1.40009 * 120.00183 * 179.97438 * 6 5 4 8 8 C 1.38645 * 120.09567 * 359.97438 * 7 6 5 9 9 C 1.38283 * 120.00346 * 179.97438 * 8 7 6 10 10 C 1.38270 * 120.20436 * 0.05011 * 9 8 7 11 11 C 1.38242 * 120.19694 * 359.97438 * 10 9 8 12 12 C 1.38729 * 119.99416 * 359.67540 * 11 10 9 13 13 S 1.76196 * 120.10405 * 180.32425 * 12 11 10 14 14 C 1.81398 * 103.00079 * 354.36010 * 13 12 11 15 15 H 1.09002 * 109.47130 * 49.52110 * 14 13 12 16 16 C 1.53005 * 109.46894 * 289.52331 * 14 13 12 17 17 C 1.50703 * 109.47326 * 169.52547 * 14 13 12 18 18 H 1.07995 * 119.99674 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99944 * 180.02562 * 17 14 13 20 20 N 1.31513 * 120.00079 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99752 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47467 * 59.99985 * 21 19 17 23 23 H 1.48501 * 109.46996 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47091 * 299.99367 * 21 19 17 25 25 H 1.07996 * 120.00449 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.99578 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99995 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47393 * 5.00160 * 3 2 1 29 29 H 1.09003 * 109.46862 * 245.00302 * 3 2 1 30 30 H 1.08994 * 109.47350 * 59.99486 * 4 3 2 31 31 H 1.09003 * 109.46935 * 299.99610 * 4 3 2 32 32 H 1.09003 * 109.46806 * 299.99771 * 5 4 3 33 33 H 1.09001 * 109.47200 * 59.99880 * 5 4 3 34 34 H 0.96998 * 120.00317 * 0.02562 * 6 5 4 35 35 H 1.08005 * 119.99607 * 359.97438 * 8 7 6 36 36 H 1.08003 * 119.89969 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.89938 * 179.97438 * 10 9 8 38 38 H 1.08003 * 120.00384 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.46549 * 173.72783 * 16 14 13 40 40 H 1.08993 * 109.46981 * 293.72952 * 16 14 13 41 41 H 1.08997 * 109.47050 * 53.73506 * 16 14 13 42 42 H 0.96997 * 120.00186 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.8004 2.6579 1.1812 6 7 4.7303 2.6850 2.3129 7 6 5.5463 3.8033 2.5220 8 6 5.4763 4.8861 1.6589 9 6 6.2827 5.9899 1.8675 10 6 7.1612 6.0179 2.9349 11 6 7.2382 4.9426 3.8003 12 6 6.4278 3.8341 3.6030 13 16 6.5175 2.4656 4.7093 14 6 7.9008 2.9091 5.7957 15 1 7.7642 3.9270 6.1608 16 6 9.2126 2.8197 5.0133 17 6 7.9469 1.9583 6.9640 18 1 7.2168 1.1667 7.0450 19 6 8.9206 2.0997 7.9298 20 7 9.8094 3.0640 7.8314 21 14 8.9781 0.9206 9.3776 22 1 9.1653 -0.4659 8.8797 23 1 10.1105 1.2837 10.2670 24 1 7.7047 1.0063 10.1367 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6211 1.4027 -0.9314 30 1 3.7400 0.5067 1.0919 31 1 2.4773 1.2356 2.1130 32 1 4.3582 2.7550 0.2497 33 1 3.0957 3.4847 1.2706 34 1 4.7813 1.9278 2.9170 35 1 4.7919 4.8675 0.8236 36 1 6.2265 6.8327 1.1943 37 1 7.7890 6.8823 3.0929 38 1 7.9258 4.9676 4.6328 39 1 10.0300 3.1921 5.6309 40 1 9.4048 1.7813 4.7437 41 1 9.1376 3.4223 4.1081 42 1 10.4946 3.1632 8.5107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157183847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:15 Heat of formation + Delta-G solvation = 12.053237 kcal Electronic energy + Delta-G solvation = -20008.545222 eV Core-core repulsion = 17078.664800 eV Total energy + Delta-G solvation = -2929.880422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.22313 -37.69709 -36.22958 -35.69694 -32.76917 -32.50808 -31.44981 -29.53605 -27.39270 -26.34728 -23.99513 -23.52328 -22.58701 -22.00716 -20.61761 -19.12268 -18.03285 -17.45551 -17.22083 -16.74210 -16.53723 -15.85107 -15.58541 -15.23883 -14.98279 -14.80424 -14.44074 -14.42068 -14.06398 -13.76304 -13.52849 -13.18962 -12.94656 -12.85954 -12.76625 -12.63632 -12.47838 -12.35259 -12.12223 -11.81970 -11.69652 -11.56490 -11.34430 -10.93784 -10.78020 -10.51045 -10.36104 -10.20146 -8.76703 -8.24915 -7.80964 -6.41373 0.45665 0.72842 1.00129 1.40843 1.41889 1.42373 1.51060 1.96293 2.37368 2.59506 2.95880 3.04722 3.81473 4.01458 4.02764 4.24038 4.28210 4.35743 4.46809 4.54337 4.59181 4.62312 4.67697 4.72692 4.79604 4.82494 4.84879 4.92771 5.04030 5.08264 5.21356 5.30547 5.31228 5.33100 5.51592 5.56992 5.71700 5.75054 5.78296 5.90921 5.99605 6.01062 6.48604 6.60797 6.74972 7.25807 8.81191 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003708 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.411109 B = 7549.760731 C = 9224.060968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C -0.084 4.084 4 C -0.121 4.121 5 C 0.127 3.873 6 N -0.749 5.749 7 C 0.219 3.781 8 C -0.187 4.187 9 C -0.077 4.077 10 C -0.170 4.170 11 C -0.108 4.108 12 C -0.165 4.165 13 S -0.192 6.192 14 C 0.103 3.897 15 H 0.020 0.980 16 C -0.120 4.120 17 C -0.536 4.536 18 H 0.058 0.942 19 C 0.026 3.974 20 N -0.910 5.910 21 Si 0.969 3.031 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.270 1.270 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.397 0.603 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.176 0.802 -16.676 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.183 4.183 3 C -0.122 4.122 4 C -0.159 4.159 5 C 0.003 3.997 6 N -0.380 5.380 7 C 0.110 3.890 8 C -0.211 4.211 9 C -0.098 4.098 10 C -0.191 4.191 11 C -0.132 4.132 12 C -0.282 4.282 13 S 0.052 5.948 14 C -0.025 4.025 15 H 0.038 0.962 16 C -0.180 4.180 17 C -0.575 4.575 18 H 0.076 0.924 19 C -0.175 4.175 20 N -0.548 5.548 21 Si 0.793 3.207 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.195 1.195 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.167 0.833 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.820 -0.176 -16.637 21.629 hybrid contribution 1.230 0.204 1.414 1.885 sum -12.590 0.028 -15.223 19.755 Atomic orbital electron populations 1.24026 0.95982 1.02519 1.00891 1.23060 0.96368 0.98764 1.00140 1.20627 0.97766 0.95756 0.98030 1.21643 0.98177 0.96539 0.99528 1.21476 0.91146 0.98503 0.88526 1.44967 1.42774 1.17622 1.32613 1.17555 0.90233 0.89144 0.92110 1.20836 1.05104 0.93480 1.01712 1.21236 0.93870 0.98030 0.96682 1.21054 1.02564 0.98482 0.97039 1.21164 0.98444 0.93675 0.99937 1.21421 1.05266 1.00012 1.01519 1.84570 1.47325 1.27909 1.35005 1.20735 0.90291 0.98139 0.93381 0.96176 1.21860 0.99360 0.99402 0.97342 1.20892 1.14916 1.14950 1.06716 0.92383 1.25702 0.94328 0.97133 1.00383 1.69983 1.16696 1.32323 1.35802 0.85447 0.77985 0.78967 0.78343 1.19406 1.20173 1.19520 0.88007 0.87920 0.87312 0.90545 0.89758 0.91561 0.92012 0.91347 0.91539 0.76819 0.83258 0.82618 0.84794 0.87794 0.91285 0.94838 0.94831 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 14.32 67.78 0.97 -1.61 16 2 C -0.17 -2.33 9.52 25.65 0.24 -2.09 16 3 C -0.08 -1.11 5.66 29.85 0.17 -0.94 16 4 C -0.12 -2.05 5.31 30.59 0.16 -1.89 16 5 C 0.13 2.46 4.92 86.38 0.42 2.89 16 6 N -0.75 -21.36 5.68 -338.83 -1.93 -23.29 16 7 C 0.22 7.22 6.66 38.24 0.25 7.47 16 8 C -0.19 -4.98 9.31 22.38 0.21 -4.77 16 9 C -0.08 -1.97 10.04 22.29 0.22 -1.75 16 10 C -0.17 -5.30 10.04 22.28 0.22 -5.07 16 11 C -0.11 -4.25 8.06 22.39 0.18 -4.07 16 12 C -0.17 -6.65 5.99 22.70 0.14 -6.51 16 13 S -0.19 -8.75 19.75 -56.49 -1.12 -9.86 16 14 C 0.10 5.40 1.97 29.85 0.06 5.46 16 15 H 0.02 1.16 6.83 -2.39 -0.02 1.15 16 16 C -0.12 -6.05 8.38 71.98 0.60 -5.44 16 17 C -0.54 -30.21 8.58 25.60 0.22 -29.99 16 18 H 0.06 3.28 7.71 -2.91 -0.02 3.25 16 19 C 0.03 1.45 5.30 84.65 0.45 1.90 16 20 N -0.91 -51.61 11.39 21.45 0.24 -51.37 16 21 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 26 H 0.10 1.17 8.06 -2.91 -0.02 1.15 16 27 H 0.11 1.49 8.06 -2.91 -0.02 1.47 16 28 H 0.08 0.90 7.79 -2.39 -0.02 0.88 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.19 7.95 -2.39 -0.02 1.17 16 33 H 0.07 1.17 7.96 -2.39 -0.02 1.16 16 34 H 0.40 12.37 7.02 -92.71 -0.65 11.72 16 35 H 0.15 2.96 6.74 -2.91 -0.02 2.94 16 36 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 38 H 0.10 4.62 4.99 -2.91 -0.01 4.61 16 39 H 0.07 3.73 6.27 -2.39 -0.01 3.71 16 40 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.03 1.54 6.16 -2.39 -0.01 1.53 16 42 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -62.44 352.09 4.10 -58.34 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.35 Total: 27.25 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 4.53 Total: -46.43 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -1.68 Total: -74.66 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.12 Total: -9.86 kcal Total: -62.44 4.10 -58.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157183847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.390 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds