Wall clock time and date at job start Tue Mar 31 2020 08:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35904 * 116.99628 * 180.02562 * 11 10 9 13 13 C 1.38758 * 120.05922 * 359.72826 * 12 11 10 14 14 C 1.38121 * 119.94303 * 179.69478 * 13 12 11 15 15 C 1.38284 * 120.05670 * 0.60266 * 14 13 12 16 16 C 1.38245 * 120.11162 * 359.67148 * 15 14 13 17 17 C 1.50705 * 119.97268 * 180.02562 * 16 15 14 18 18 N 1.46898 * 109.47127 * 269.98074 * 17 16 15 19 19 C 1.47900 * 111.00224 * 69.87284 * 18 17 16 20 20 C 1.54001 * 107.06113 * 214.15853 * 19 18 17 21 21 C 1.54593 * 105.13571 * 1.22322 * 20 19 18 22 22 H 1.09004 * 110.72512 * 263.60009 * 21 20 19 23 23 O 1.42900 * 110.72090 * 140.49644 * 21 20 19 24 24 C 1.48534 * 110.99963 * 312.47793 * 18 17 16 25 25 C 1.38173 * 120.05607 * 0.02881 * 16 15 14 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.08003 * 120.02200 * 359.97438 * 13 12 11 32 32 H 1.07998 * 119.96674 * 180.29445 * 14 13 12 33 33 H 1.08003 * 119.94493 * 179.69558 * 15 14 13 34 34 H 1.08999 * 109.46727 * 29.97964 * 17 16 15 35 35 H 1.08992 * 109.46868 * 149.98166 * 17 16 15 36 36 H 1.09002 * 109.91801 * 333.50530 * 19 18 17 37 37 H 1.08993 * 109.92078 * 94.79966 * 19 18 17 38 38 H 1.08999 * 110.30993 * 120.14139 * 20 19 18 39 39 H 1.08998 * 110.30373 * 242.30893 * 20 19 18 40 40 H 0.96706 * 113.99953 * 61.45583 * 23 21 20 41 41 H 1.09000 * 110.66543 * 278.15754 * 24 18 17 42 42 H 1.09004 * 110.67202 * 41.28731 * 24 18 17 43 43 H 1.07997 * 120.02733 * 179.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2711 -6.0394 0.0024 13 6 3.6568 -5.9681 -0.0034 14 6 4.4068 -7.1279 0.0034 15 6 3.7778 -8.3595 0.0033 16 6 2.3973 -8.4332 0.0034 17 6 1.7151 -9.7770 0.0039 18 7 1.4931 -10.2140 -1.3809 19 6 2.7716 -10.5591 -2.0393 20 6 2.6382 -10.1624 -3.5213 21 6 1.2257 -9.5473 -3.6489 22 1 0.5115 -10.2910 -4.0024 23 8 1.2445 -8.4137 -4.5188 24 6 0.9002 -9.1222 -2.1950 25 6 1.6425 -7.2759 0.0028 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5564 0.8919 29 1 2.8714 -3.6047 -0.8890 30 1 2.8726 -3.6039 0.8910 31 1 4.1484 -5.0065 -0.0087 32 1 5.4854 -7.0729 0.0037 33 1 4.3661 -9.2652 0.0037 34 1 2.3444 -10.5037 0.5177 35 1 0.7573 -9.6979 0.5180 36 1 3.5885 -10.0037 -1.5785 37 1 2.9546 -11.6304 -1.9567 38 1 3.3969 -9.4259 -3.7856 39 1 2.7264 -11.0428 -4.1580 40 1 1.5176 -8.6170 -5.4240 41 1 -0.1777 -9.0698 -2.0416 42 1 1.3703 -8.1674 -1.9590 43 1 0.5641 -7.3340 0.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157651315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:02 Heat of formation + Delta-G solvation = -62.077892 kcal Electronic energy + Delta-G solvation = -23058.587845 eV Core-core repulsion = 19682.739985 eV Total energy + Delta-G solvation = -3375.847860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44193 -39.12910 -37.33528 -35.93447 -33.39413 -32.51303 -30.92400 -29.73018 -29.42472 -28.40893 -25.70648 -24.84317 -22.58813 -22.05786 -21.13657 -20.97408 -20.10693 -17.68387 -17.56259 -16.34720 -16.14506 -15.86553 -15.60587 -15.54557 -15.24710 -14.60397 -14.40436 -14.22926 -13.63278 -13.56495 -13.27660 -12.86756 -12.63293 -12.45208 -12.33183 -11.79890 -11.72719 -11.57484 -11.43845 -11.37497 -11.24695 -10.88689 -10.78916 -10.72861 -10.49908 -10.17087 -9.87526 -9.66911 -9.30991 -8.75616 -8.65028 -8.45375 -7.88643 -6.10607 -4.15454 1.36520 1.60541 3.27144 3.32960 3.35749 3.59024 3.78653 3.90598 4.15391 4.39687 4.41504 4.58852 4.72998 4.82305 4.91953 5.05272 5.10924 5.22004 5.25749 5.37222 5.39814 5.49235 5.54880 5.58989 5.62969 5.74632 5.80759 5.84563 5.88408 6.01653 6.03236 6.10893 6.41555 6.52407 6.53137 6.66958 6.69960 6.74512 6.91500 7.46879 7.49644 7.63523 7.79960 8.03987 8.23104 8.90010 9.48866 11.00960 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.003144 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.142950 B = 8903.413464 C = 9403.370048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.314 6.314 12 C 0.148 3.852 13 C -0.209 4.209 14 C -0.080 4.080 15 C -0.164 4.164 16 C -0.089 4.089 17 C 0.085 3.915 18 N -0.504 5.504 19 C 0.026 3.974 20 C -0.165 4.165 21 C 0.099 3.901 22 H 0.069 0.931 23 O -0.559 6.559 24 C 0.027 3.973 25 C -0.149 4.149 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.378 0.622 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 -22.899 -4.535 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.227 6.227 12 C 0.101 3.899 13 C -0.228 4.228 14 C -0.098 4.098 15 C -0.183 4.183 16 C -0.091 4.091 17 C -0.042 4.042 18 N -0.227 5.227 19 C -0.102 4.102 20 C -0.203 4.203 21 C 0.039 3.961 22 H 0.087 0.913 23 O -0.364 6.364 24 C -0.101 4.101 25 C -0.168 4.168 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.225 0.775 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.553 -22.905 -3.960 23.899 hybrid contribution 1.518 1.475 -0.516 2.179 sum 7.071 -21.430 -4.476 23.006 Atomic orbital electron populations 1.69973 1.06104 1.26991 1.49631 1.24989 0.94906 0.99381 0.94887 0.86485 0.79728 0.82926 0.78232 1.20474 1.21028 1.19769 1.20967 0.93029 0.90216 1.52331 0.92388 1.19124 0.94159 0.88974 0.98902 1.23344 0.97114 0.80807 0.99613 1.86187 1.36529 1.13203 1.86795 1.19194 0.90116 0.87575 0.93050 1.21413 0.93251 0.99875 1.08237 1.20882 0.99408 0.91947 0.97540 1.20801 0.93685 0.97352 1.06442 1.20191 0.93932 0.95490 0.99490 1.21357 1.00773 0.91452 0.90639 1.65160 1.21292 1.34588 1.01623 1.22946 0.92489 1.01334 0.93407 1.23137 0.98599 1.01391 0.97166 1.22670 0.95114 0.87381 0.90946 0.91328 1.86571 1.91279 1.34315 1.24221 1.23396 1.01106 0.95355 0.90232 1.20320 1.00214 0.89382 1.06880 0.92682 0.95356 0.95383 0.93142 0.93137 0.85188 0.86181 0.86525 0.89620 0.89257 0.92097 0.90330 0.90495 0.90941 0.77490 0.89383 0.90270 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.07 1.42 4.68 37.16 0.17 1.60 16 11 O -0.31 -6.61 10.14 -19.44 -0.20 -6.80 16 12 C 0.15 2.62 6.69 -39.22 -0.26 2.36 16 13 C -0.21 -3.31 9.04 -39.43 -0.36 -3.66 16 14 C -0.08 -1.04 10.04 -39.61 -0.40 -1.44 16 15 C -0.16 -1.96 8.19 -39.56 -0.32 -2.29 16 16 C -0.09 -1.12 3.96 -104.64 -0.41 -1.54 16 17 C 0.09 0.87 5.69 -4.97 -0.03 0.84 16 18 N -0.50 -5.26 5.54 -231.89 -1.28 -6.54 16 19 C 0.03 0.24 6.46 -2.75 -0.02 0.22 16 20 C -0.16 -1.44 6.69 -25.37 -0.17 -1.61 16 21 C 0.10 1.02 4.43 -24.87 -0.11 0.90 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 O -0.56 -6.40 13.41 -35.23 -0.47 -6.87 16 24 C 0.03 0.32 5.79 -1.90 -0.01 0.31 16 25 C -0.15 -2.26 7.43 -39.43 -0.29 -2.56 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.05 7.65 -51.93 -0.40 0.66 16 30 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 31 H 0.13 2.04 6.30 -52.48 -0.33 1.71 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.12 7.16 -52.48 -0.38 0.74 16 34 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.06 0.58 4.86 -51.93 -0.25 0.33 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.38 2.52 9.11 45.56 0.42 2.94 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.14 4.85 -51.93 -0.25 0.89 16 43 H 0.13 1.89 8.05 -52.49 -0.42 1.46 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -31.82 345.02 -9.58 -41.40 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.77 Total: 3.00 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -2.77 Total: -19.84 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: -0.55 Total: -32.43 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.67 Total: -13.68 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.82 -9.58 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157651315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.676 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds