Wall clock time and date at job start Tue Mar 31 2020 08:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.35904 * 116.99628 * 180.02562 * 11 10 9 13 13 C 1.38758 * 120.05922 * 359.72826 * 12 11 10 14 14 C 1.38121 * 119.94303 * 179.69478 * 13 12 11 15 15 C 1.38284 * 120.05670 * 0.60266 * 14 13 12 16 16 C 1.38245 * 120.11162 * 359.67148 * 15 14 13 17 17 C 1.50705 * 119.97268 * 180.02562 * 16 15 14 18 18 N 1.46898 * 109.47127 * 269.98074 * 17 16 15 19 19 C 1.47900 * 111.00224 * 69.87284 * 18 17 16 20 20 C 1.54001 * 107.06113 * 214.15853 * 19 18 17 21 21 C 1.54593 * 105.13571 * 1.22322 * 20 19 18 22 22 H 1.09004 * 110.72512 * 263.60009 * 21 20 19 23 23 O 1.42900 * 110.72090 * 140.49644 * 21 20 19 24 24 C 1.48534 * 110.99963 * 312.47793 * 18 17 16 25 25 C 1.38173 * 120.05607 * 0.02881 * 16 15 14 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.08003 * 120.02200 * 359.97438 * 13 12 11 32 32 H 1.07998 * 119.96674 * 180.29445 * 14 13 12 33 33 H 1.08003 * 119.94493 * 179.69558 * 15 14 13 34 34 H 1.08999 * 109.46727 * 29.97964 * 17 16 15 35 35 H 1.08992 * 109.46868 * 149.98166 * 17 16 15 36 36 H 1.09002 * 109.91801 * 333.50530 * 19 18 17 37 37 H 1.08993 * 109.92078 * 94.79966 * 19 18 17 38 38 H 1.08999 * 110.30993 * 120.14139 * 20 19 18 39 39 H 1.08998 * 110.30373 * 242.30893 * 20 19 18 40 40 H 0.96706 * 113.99953 * 61.45583 * 23 21 20 41 41 H 1.09000 * 110.66543 * 278.15754 * 24 18 17 42 42 H 1.09004 * 110.67202 * 41.28731 * 24 18 17 43 43 H 1.07997 * 120.02733 * 179.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 8 1.5308 -4.8996 0.0020 12 6 2.2711 -6.0394 0.0024 13 6 3.6568 -5.9681 -0.0034 14 6 4.4068 -7.1279 0.0034 15 6 3.7778 -8.3595 0.0033 16 6 2.3973 -8.4332 0.0034 17 6 1.7151 -9.7770 0.0039 18 7 1.4931 -10.2140 -1.3809 19 6 2.7716 -10.5591 -2.0393 20 6 2.6382 -10.1624 -3.5213 21 6 1.2257 -9.5473 -3.6489 22 1 0.5115 -10.2910 -4.0024 23 8 1.2445 -8.4137 -4.5188 24 6 0.9002 -9.1222 -2.1950 25 6 1.6425 -7.2759 0.0028 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5564 0.8919 29 1 2.8714 -3.6047 -0.8890 30 1 2.8726 -3.6039 0.8910 31 1 4.1484 -5.0065 -0.0087 32 1 5.4854 -7.0729 0.0037 33 1 4.3661 -9.2652 0.0037 34 1 2.3444 -10.5037 0.5177 35 1 0.7573 -9.6979 0.5180 36 1 3.5885 -10.0037 -1.5785 37 1 2.9546 -11.6304 -1.9567 38 1 3.3969 -9.4259 -3.7856 39 1 2.7264 -11.0428 -4.1580 40 1 1.5176 -8.6170 -5.4240 41 1 -0.1777 -9.0698 -2.0416 42 1 1.3703 -8.1674 -1.9590 43 1 0.5641 -7.3340 0.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157651315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:58 Heat of formation + Delta-G solvation = -85.213615 kcal Electronic energy + Delta-G solvation = -23059.591085 eV Core-core repulsion = 19682.739985 eV Total energy + Delta-G solvation = -3376.851100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50937 -40.25570 -38.51307 -36.87154 -35.49530 -33.43267 -32.64591 -31.02120 -30.51032 -29.33736 -27.16149 -26.27566 -23.80701 -23.47491 -22.29613 -21.87359 -21.33203 -19.13577 -18.42700 -18.16840 -17.12802 -17.04847 -16.97451 -16.83772 -16.44916 -16.37596 -15.37364 -15.20993 -14.64366 -14.47053 -14.39630 -14.32592 -14.21291 -13.94529 -13.54037 -13.09938 -12.97775 -12.72349 -12.60007 -12.59460 -12.47582 -12.36114 -12.18457 -11.98700 -11.64546 -11.60642 -11.47948 -11.42376 -10.95072 -10.64788 -9.83806 -9.50933 -9.14984 -8.28957 -6.43358 0.26080 0.45511 1.39192 1.41874 1.53024 2.23628 2.47813 2.66778 2.91862 3.05281 3.40710 3.63470 3.75869 3.84776 3.91063 4.06923 4.10443 4.16166 4.21215 4.24841 4.32474 4.36603 4.49557 4.61416 4.67809 4.68457 4.76945 4.81408 4.88812 4.94431 5.03463 5.05309 5.17360 5.27115 5.35173 5.42262 5.44212 5.49704 5.64384 5.78767 5.86391 5.93268 6.04117 6.51297 6.71140 6.86520 7.26972 8.84312 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.003144 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.142950 B = 8903.413464 C = 9403.370048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.029 3.971 10 C 0.086 3.914 11 O -0.343 6.343 12 C 0.106 3.894 13 C -0.222 4.222 14 C -0.077 4.077 15 C -0.150 4.150 16 C -0.081 4.081 17 C 0.086 3.914 18 N -0.499 5.499 19 C 0.022 3.978 20 C -0.158 4.158 21 C 0.096 3.904 22 H 0.082 0.918 23 O -0.586 6.586 24 C 0.021 3.979 25 C -0.157 4.157 26 H 0.267 0.733 27 H -0.004 1.004 28 H -0.002 1.002 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.126 0.874 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.396 0.604 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 -24.937 -4.762 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.586 4.586 8 H 0.089 0.911 9 C -0.008 4.008 10 C 0.012 3.988 11 O -0.257 6.257 12 C 0.061 3.939 13 C -0.241 4.241 14 C -0.095 4.095 15 C -0.168 4.168 16 C -0.083 4.083 17 C -0.042 4.042 18 N -0.222 5.222 19 C -0.105 4.105 20 C -0.196 4.196 21 C 0.037 3.963 22 H 0.100 0.900 23 O -0.394 6.394 24 C -0.107 4.107 25 C -0.176 4.176 26 H 0.076 0.924 27 H 0.015 0.985 28 H 0.017 0.983 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.246 0.754 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.295 -24.981 -4.201 26.656 hybrid contribution 0.640 1.928 -0.475 2.086 sum 8.935 -23.053 -4.676 25.163 Atomic orbital electron populations 1.70122 1.08105 1.28306 1.50470 1.26068 0.95842 1.03769 0.94035 0.85258 0.78569 0.77370 0.78706 1.19496 1.20542 1.18244 1.21390 0.93816 0.90982 1.52383 0.91111 1.18958 0.94516 0.91429 0.95910 1.22852 0.95407 0.80261 1.00328 1.86090 1.37563 1.13840 1.88249 1.19539 0.91196 0.86869 0.96332 1.21516 0.92517 1.01062 1.08985 1.21260 1.00894 0.91213 0.96157 1.21259 0.93503 0.98377 1.03694 1.20490 0.94430 0.95536 0.97863 1.21483 1.01185 0.90562 0.90925 1.65181 1.22198 1.33358 1.01492 1.23087 0.91496 1.02603 0.93305 1.23102 0.96987 1.01971 0.97557 1.22739 0.96662 0.87210 0.89723 0.90038 1.86525 1.91602 1.35506 1.25816 1.23356 1.00569 0.94642 0.92136 1.20445 1.00229 0.89675 1.07283 0.92376 0.98536 0.98319 0.92472 0.92157 0.85620 0.83024 0.82823 0.86887 0.89308 0.92183 0.88150 0.91281 0.88503 0.75358 0.90252 0.93136 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 2 C 0.00 0.08 5.46 84.66 0.46 0.55 16 3 Si 0.98 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.55 -31.63 9.11 25.60 0.23 -31.40 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 9 C 0.03 1.64 5.34 29.85 0.16 1.80 16 10 C 0.09 3.94 4.68 71.98 0.34 4.27 16 11 O -0.34 -15.43 10.14 -92.47 -0.94 -16.36 16 12 C 0.11 3.91 6.69 22.51 0.15 4.06 16 13 C -0.22 -7.01 9.04 22.37 0.20 -6.80 16 14 C -0.08 -1.83 10.04 22.25 0.22 -1.61 16 15 C -0.15 -3.11 8.19 22.28 0.18 -2.93 16 16 C -0.08 -1.92 3.96 -19.88 -0.08 -2.00 16 17 C 0.09 1.56 5.69 85.56 0.49 2.05 16 18 N -0.50 -9.33 5.54 -887.56 -4.91 -14.24 16 19 C 0.02 0.33 6.46 86.45 0.56 0.89 16 20 C -0.16 -2.33 6.69 31.47 0.21 -2.12 16 21 C 0.10 1.86 4.43 31.80 0.14 2.00 16 22 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 23 O -0.59 -13.26 13.41 -148.98 -2.00 -15.26 16 24 C 0.02 0.49 5.79 86.65 0.50 0.99 16 25 C -0.16 -4.93 7.43 22.37 0.17 -4.77 16 26 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 30 H 0.06 2.59 7.67 -2.39 -0.02 2.57 16 31 H 0.13 3.97 6.30 -2.91 -0.02 3.95 16 32 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.15 2.11 7.16 -2.91 -0.02 2.09 16 34 H 0.11 1.48 8.03 -2.39 -0.02 1.46 16 35 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 36 H 0.06 0.90 4.86 -2.39 -0.01 0.89 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.40 5.00 9.11 -74.05 -0.67 4.32 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.05 1.50 4.85 -2.38 -0.01 1.48 16 43 H 0.12 3.80 8.05 -2.91 -0.02 3.78 16 Total: -1.00 -72.05 345.02 -1.27 -73.32 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.33 Total: 18.79 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 3.94 Total: -35.01 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -4.63 Total: -71.55 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -2.94 Total: -31.62 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.05 -1.27 -73.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157651315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.894 kcal (2) G-P(sol) polarization free energy of solvation -72.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds