Wall clock time and date at job start Tue Mar 31 2020 08:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48503 * 109.46941 * 269.99699 * 3 2 1 5 5 H 1.48496 * 109.47068 * 29.99613 * 3 2 1 6 6 H 1.48490 * 109.46959 * 149.99982 * 3 2 1 7 7 C 1.38807 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00324 * 202.77564 * 7 2 1 9 9 N 1.36945 * 120.00177 * 22.78562 * 7 2 1 10 10 C 1.46496 * 120.00046 * 33.40406 * 9 7 2 11 11 C 1.50700 * 109.47108 * 95.38188 * 10 9 7 12 12 C 1.38233 * 120.00181 * 274.39702 * 11 10 9 13 13 C 1.38238 * 120.00309 * 179.76208 * 12 11 10 14 14 C 1.38240 * 119.99789 * 0.51055 * 13 12 11 15 15 C 1.38237 * 119.99714 * 359.73821 * 14 13 12 16 16 C 1.38231 * 119.99888 * 94.66477 * 11 10 9 17 17 C 1.46499 * 119.99523 * 213.41029 * 9 7 2 18 18 C 1.52999 * 109.47361 * 84.50136 * 17 9 7 19 19 O 1.42902 * 109.54252 * 299.89999 * 18 17 9 20 20 C 1.53172 * 109.54555 * 60.07308 * 18 17 9 21 21 C 1.53282 * 109.06774 * 176.85446 * 20 18 17 22 22 O 1.42912 * 109.45890 * 302.44836 * 21 20 18 23 23 C 1.42905 * 114.09351 * 61.15285 * 22 21 20 24 24 C 1.53089 * 109.41923 * 298.84204 * 23 22 21 25 25 H 0.96994 * 119.99879 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 215.38079 * 10 9 7 27 27 H 1.08999 * 109.47302 * 335.38506 * 10 9 7 28 28 H 1.08004 * 119.99973 * 359.97438 * 12 11 10 29 29 H 1.07998 * 120.00569 * 180.22425 * 13 12 11 30 30 H 1.07999 * 120.00180 * 179.72117 * 14 13 12 31 31 H 1.08002 * 119.99782 * 179.97438 * 15 14 13 32 32 H 1.07999 * 120.00434 * 0.02562 * 16 11 10 33 33 H 1.09000 * 109.47506 * 324.49593 * 17 9 7 34 34 H 1.09006 * 109.46761 * 204.49472 * 17 9 7 35 35 H 0.96696 * 114.00372 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.52505 * 296.84437 * 20 18 17 37 37 H 1.09001 * 109.52035 * 57.03381 * 20 18 17 38 38 H 1.08997 * 109.46159 * 182.44767 * 21 20 18 39 39 H 1.09002 * 109.46725 * 62.44670 * 21 20 18 40 40 H 1.09000 * 109.47062 * 178.85685 * 23 22 21 41 41 H 1.09005 * 109.48759 * 58.83497 * 23 22 21 42 42 H 1.09001 * 109.52041 * 297.70599 * 24 23 22 43 43 H 1.08995 * 109.57540 * 177.54902 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0271 -1.2385 0.3626 9 7 1.4057 -2.3420 -0.4583 10 6 0.4351 -2.2666 -1.5530 11 6 1.1296 -2.5492 -2.8603 12 6 1.7614 -1.5264 -3.5425 13 6 2.4026 -1.7865 -4.7392 14 6 2.4030 -3.0675 -5.2590 15 6 1.7667 -4.0893 -4.5793 16 6 1.1300 -3.8301 -3.3799 17 6 1.7294 -3.6368 0.1459 18 6 0.8703 -3.8461 1.3945 19 8 1.1344 -2.8047 2.3366 20 6 -0.6114 -3.8226 1.0068 21 6 -1.4591 -4.1114 2.2508 22 8 -1.0783 -5.3729 2.8040 23 6 0.2853 -5.4368 3.2267 24 6 1.2026 -5.2026 2.0236 25 1 -0.4850 0.8400 0.0004 26 1 -0.3515 -3.0040 -1.3926 27 1 -0.0026 -1.2689 -1.5824 28 1 1.7571 -0.5246 -3.1389 29 1 2.8994 -0.9881 -5.2705 30 1 2.9001 -3.2698 -6.1962 31 1 1.7666 -5.0900 -4.9856 32 1 0.6323 -4.6283 -2.8494 33 1 2.7835 -3.6552 0.4229 34 1 1.5282 -4.4327 -0.5712 35 1 0.6231 -2.8750 3.1543 36 1 -0.8682 -2.8411 0.6083 37 1 -0.8024 -4.5848 0.2513 38 1 -2.5129 -4.1393 1.9736 39 1 -1.2983 -3.3268 2.9901 40 1 0.4880 -6.4194 3.6526 41 1 0.4692 -4.6695 3.9788 42 1 1.0482 -5.9926 1.2886 43 1 2.2423 -5.2075 2.3506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159413337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:55 Heat of formation + Delta-G solvation = -48.406294 kcal Electronic energy + Delta-G solvation = -24705.172138 eV Core-core repulsion = 21329.917123 eV Total energy + Delta-G solvation = -3375.255015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -39.61915 -38.52951 -36.31157 -34.82342 -31.87919 -31.32846 -30.77366 -30.23054 -30.09711 -26.79874 -25.51445 -23.35991 -23.13985 -21.87002 -21.33196 -19.98913 -19.22070 -16.94826 -16.67807 -15.99839 -15.71935 -15.32293 -14.81496 -14.50095 -14.28186 -14.21139 -14.11535 -13.77046 -13.44097 -13.07165 -12.77558 -12.60134 -12.00734 -11.90625 -11.80144 -11.35330 -11.23419 -11.01328 -10.91862 -10.83105 -10.68792 -10.63606 -10.43784 -10.12463 -10.04858 -9.89989 -9.80006 -9.12236 -9.00173 -8.42346 -8.29266 -7.99726 -6.60618 -5.75886 -3.21508 2.02288 2.06271 3.39239 3.47503 3.49513 4.10799 4.40744 4.57325 4.96111 5.07919 5.21208 5.33668 5.40054 5.42374 5.44781 5.45748 5.50680 5.63097 5.67736 5.76443 5.90953 5.91743 6.03132 6.14240 6.17055 6.24317 6.28588 6.37752 6.41746 6.51896 6.69542 6.75095 6.77827 6.82007 6.97597 7.07165 7.16756 7.44136 7.46243 7.62709 7.74596 7.89897 8.46005 8.56313 9.21697 9.83351 10.38584 11.28091 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.006974 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.719727 B = 4013.988340 C = 5589.814998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.010 3.990 3 Si 0.890 3.110 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.060 0.940 9 N -0.563 5.563 10 C 0.169 3.831 11 C -0.073 4.073 12 C -0.098 4.098 13 C -0.127 4.127 14 C -0.145 4.145 15 C -0.129 4.129 16 C -0.127 4.127 17 C 0.162 3.838 18 C 0.118 3.882 19 O -0.517 6.517 20 C -0.173 4.173 21 C 0.057 3.943 22 O -0.391 6.391 23 C 0.060 3.940 24 C -0.185 4.185 25 H 0.251 0.749 26 H 0.033 0.967 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.344 0.656 36 H 0.110 0.890 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 -8.786 -1.103 8.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.189 4.189 3 Si 0.720 3.280 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.353 4.353 8 H 0.078 0.922 9 N -0.280 5.280 10 C 0.043 3.957 11 C -0.076 4.076 12 C -0.117 4.117 13 C -0.146 4.146 14 C -0.163 4.163 15 C -0.148 4.148 16 C -0.146 4.146 17 C 0.035 3.965 18 C 0.074 3.926 19 O -0.320 6.320 20 C -0.211 4.211 21 C -0.019 4.019 22 O -0.310 6.310 23 C -0.017 4.017 24 C -0.224 4.224 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.188 0.812 36 H 0.128 0.872 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.089 -8.581 -1.517 8.714 hybrid contribution 0.319 0.809 0.398 0.956 sum 0.230 -7.772 -1.119 7.855 Atomic orbital electron populations 1.69952 1.05255 1.25277 1.52608 1.24903 0.94895 0.98156 1.00900 0.86478 0.79608 0.84306 0.77578 1.21636 1.21997 1.20505 1.18934 0.94473 0.85319 1.36531 0.92231 1.43657 1.49400 1.02025 1.32938 1.20192 0.89843 1.03983 0.81678 1.21313 0.96836 0.92321 0.97131 1.21127 0.96804 0.99837 0.93906 1.21097 1.00219 0.96421 0.96816 1.20885 1.01892 0.93552 1.00011 1.20974 0.99401 0.98260 0.96124 1.21042 1.00799 0.96695 0.96036 1.20941 0.96487 0.89074 0.90017 1.22067 0.94663 0.84306 0.91563 1.86949 1.66769 1.49715 1.28542 1.22851 0.96107 1.04635 0.97498 1.22681 0.99249 0.84794 0.95156 1.87874 1.26967 1.35038 1.81158 1.22511 0.82049 1.01504 0.95591 1.22927 1.00287 1.00145 0.99016 0.93871 0.94919 0.87163 0.86219 0.87232 0.87427 0.87388 0.87285 0.93707 0.93238 0.81154 0.87165 0.92104 0.89298 0.93286 0.89463 0.93467 0.90980 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.83 11.34 55.49 0.63 -23.20 16 2 C 0.01 0.27 4.91 -17.43 -0.09 0.18 16 3 Si 0.89 21.31 29.61 -169.99 -5.03 16.27 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -5.78 8.58 -15.06 -0.13 -5.91 16 8 H 0.06 1.63 7.93 -52.48 -0.42 1.22 16 9 N -0.56 -12.89 2.05 -174.61 -0.36 -13.25 16 10 C 0.17 3.70 4.50 -5.20 -0.02 3.68 16 11 C -0.07 -1.47 5.46 -104.63 -0.57 -2.04 16 12 C -0.10 -1.95 9.72 -39.58 -0.38 -2.34 16 13 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 14 C -0.14 -2.28 10.05 -39.58 -0.40 -2.68 16 15 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 16 C -0.13 -2.23 9.68 -39.58 -0.38 -2.62 16 17 C 0.16 3.26 4.98 -4.04 -0.02 3.24 16 18 C 0.12 2.13 0.88 -90.44 -0.08 2.06 16 19 O -0.52 -10.58 11.97 -35.23 -0.42 -11.01 16 20 C -0.17 -3.08 3.94 -26.50 -0.10 -3.19 16 21 C 0.06 0.90 6.59 37.30 0.25 1.15 16 22 O -0.39 -6.09 10.77 -35.23 -0.38 -6.47 16 23 C 0.06 0.82 6.59 37.20 0.25 1.06 16 24 C -0.19 -2.74 5.15 -26.60 -0.14 -2.87 16 25 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 26 H 0.03 0.68 6.42 -51.93 -0.33 0.35 16 27 H 0.11 2.76 5.30 -51.93 -0.28 2.49 16 28 H 0.12 2.57 8.06 -52.48 -0.42 2.14 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 35 H 0.34 5.97 5.96 45.56 0.27 6.24 16 36 H 0.11 2.37 6.59 -51.93 -0.34 2.03 16 37 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 0.76 6.93 -51.93 -0.36 0.40 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.61 6.93 -51.93 -0.36 0.25 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -28.06 339.58 -9.08 -37.13 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.01 Total: 10.71 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -2.62 Total: -15.31 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.27 Total: -36.45 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.80 Total: -17.47 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.06 -9.08 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159413337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.272 kcal (2) G-P(sol) polarization free energy of solvation -28.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds