Wall clock time and date at job start Tue Mar 31 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.53683 * 2 1 4 4 C 1.53744 * 109.59469 * 239.80408 * 2 1 3 5 5 H 1.09008 * 109.99024 * 191.48264 * 4 2 1 6 6 C 1.53002 * 109.99324 * 70.10948 * 4 2 1 7 7 S 1.81929 * 106.76079 * 310.79498 * 4 2 1 8 8 C 1.76633 * 101.85498 * 316.50580 * 7 4 2 9 9 C 1.39085 * 118.30629 * 191.57190 * 8 7 4 10 10 C 1.38038 * 120.47747 * 180.55911 * 9 8 7 11 11 C 1.38280 * 119.63101 * 0.11044 * 10 9 8 12 12 C 1.37818 * 120.21340 * 359.67897 * 11 10 9 13 13 C 1.38934 * 121.43695 * 11.67912 * 8 7 4 14 14 N 1.39118 * 124.92219 * 358.83487 * 13 8 7 15 15 C 1.46901 * 111.00076 * 153.27385 * 14 13 8 16 16 C 1.53002 * 109.46853 * 175.26725 * 15 14 13 17 17 C 1.53003 * 109.47047 * 185.65615 * 16 15 14 18 18 C 1.50697 * 109.46805 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00301 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99553 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99929 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00152 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46812 * 60.00253 * 22 20 18 24 24 H 1.48495 * 109.47360 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47050 * 300.00332 * 22 20 18 26 26 H 1.09006 * 109.47382 * 299.85256 * 1 2 3 27 27 H 1.09007 * 109.47325 * 59.84945 * 1 2 3 28 28 H 1.08996 * 109.47784 * 179.84678 * 1 2 3 29 29 H 1.08995 * 109.47456 * 59.99653 * 6 4 2 30 30 H 1.08999 * 109.46819 * 179.97438 * 6 4 2 31 31 H 1.09005 * 109.46570 * 299.99578 * 6 4 2 32 32 H 1.08004 * 119.75762 * 0.56864 * 9 8 7 33 33 H 1.08000 * 120.18990 * 180.10461 * 10 9 8 34 34 H 1.07999 * 119.89585 * 179.66428 * 11 10 9 35 35 H 1.07994 * 119.57314 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.46930 * 55.27288 * 15 14 13 37 37 H 1.08994 * 109.47043 * 295.27154 * 15 14 13 38 38 H 1.09007 * 109.46592 * 65.65709 * 16 15 14 39 39 H 1.08992 * 109.47459 * 305.65661 * 16 15 14 40 40 H 1.08994 * 109.47063 * 59.99974 * 17 16 15 41 41 H 1.09002 * 109.46780 * 299.99842 * 17 16 15 42 42 H 0.97004 * 119.99887 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0456 -0.7285 -1.2519 5 1 3.1163 -0.9120 -1.1618 6 6 1.7602 0.1097 -2.4996 7 16 1.1493 -2.3089 -1.3457 8 6 1.1938 -2.8516 0.3346 9 6 0.8116 -4.1590 0.6158 10 6 0.8183 -4.6265 1.9146 11 6 1.2062 -3.7859 2.9417 12 6 1.5904 -2.4905 2.6702 13 6 1.5961 -2.0041 1.3594 14 7 2.0168 -0.6893 1.1867 15 6 1.7686 0.1061 2.3965 16 6 2.3491 1.5096 2.2120 17 6 2.2166 2.2923 3.5200 18 6 2.7878 3.6749 3.3380 19 1 3.2034 3.9664 2.3847 20 6 2.7790 4.5681 4.3883 21 7 2.2724 4.2133 5.5490 22 14 3.4877 6.2818 4.1631 23 1 2.7462 6.9865 3.0866 24 1 3.3589 7.0414 5.4325 25 1 4.9217 6.1794 3.7913 26 1 -0.3634 0.5116 0.8913 27 1 -0.3634 0.5162 -0.8887 28 1 -0.3634 -1.0276 -0.0027 29 1 2.2625 1.0731 -2.4129 30 1 2.1293 -0.4141 -3.3814 31 1 0.6856 0.2673 -2.5934 32 1 0.5074 -4.8132 -0.1880 33 1 0.5222 -5.6431 2.1274 34 1 1.2079 -4.1455 3.9601 35 1 1.8910 -1.8428 3.4804 36 1 2.2445 -0.3744 3.2512 37 1 0.6950 0.1769 2.5708 38 1 1.8045 2.0271 1.4221 39 1 3.4015 1.4345 1.9386 40 1 2.7611 1.7749 4.3098 41 1 1.1641 2.3675 3.7933 42 1 2.2658 4.8419 6.2878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161119561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:59 Heat of formation + Delta-G solvation = 27.362770 kcal Electronic energy + Delta-G solvation = -21303.678591 eV Core-core repulsion = 18374.462041 eV Total energy + Delta-G solvation = -2929.216551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44887 -37.65495 -34.64834 -33.42199 -31.69626 -31.05785 -29.75943 -28.46384 -26.56833 -25.00001 -23.17475 -22.34080 -22.04486 -20.82432 -19.22208 -17.47431 -16.57386 -16.53480 -15.87073 -15.69167 -15.23008 -14.59756 -14.31331 -14.18076 -13.92126 -13.73166 -13.52510 -12.65882 -12.58532 -12.45589 -12.36956 -12.21819 -11.79645 -11.70628 -11.56703 -11.42528 -11.04342 -10.96935 -10.90134 -10.62176 -10.41321 -10.03068 -9.80207 -9.71148 -9.48544 -9.41797 -9.14559 -8.39576 -7.92236 -7.11342 -6.04845 -4.07607 1.27090 1.42803 1.59456 2.35861 3.30105 3.34916 3.36834 3.51314 3.87290 4.40741 4.42233 4.69578 4.86729 4.94291 5.00552 5.22287 5.26530 5.31257 5.34757 5.39978 5.44995 5.53269 5.57898 5.69880 5.70933 5.76082 5.84894 5.90224 5.95126 6.11218 6.13895 6.26387 6.31193 6.50787 6.55262 6.62619 6.81965 6.96802 7.11747 7.41040 7.59179 7.72412 7.93602 8.35816 8.98628 9.56780 11.06445 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.004133 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.391751 B = 6773.209469 C = 7914.605543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.085 3.915 3 H 0.118 0.882 4 C -0.065 4.065 5 H 0.103 0.897 6 C -0.133 4.133 7 S -0.136 6.136 8 C -0.130 4.130 9 C -0.072 4.072 10 C -0.149 4.149 11 C -0.089 4.089 12 C -0.164 4.164 13 C 0.150 3.850 14 N -0.504 5.504 15 C 0.059 3.941 16 C -0.112 4.112 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.017 0.983 41 H 0.015 0.985 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 -14.769 -11.995 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.024 4.024 3 H 0.136 0.864 4 C -0.194 4.194 5 H 0.121 0.879 6 C -0.192 4.192 7 S 0.106 5.894 8 C -0.245 4.245 9 C -0.096 4.096 10 C -0.170 4.170 11 C -0.110 4.110 12 C -0.186 4.186 13 C 0.044 3.956 14 N -0.214 5.214 15 C -0.065 4.065 16 C -0.150 4.150 17 C -0.013 4.013 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.154 0.846 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.034 0.966 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.611 -15.070 -12.968 20.207 hybrid contribution 0.369 1.492 1.232 1.969 sum -3.243 -13.578 -11.736 18.238 Atomic orbital electron populations 1.22697 0.95364 1.03899 1.02997 1.21822 0.94446 0.99137 0.86952 0.86427 1.23734 1.02654 0.94483 0.98568 0.87875 1.21650 1.03127 0.99523 0.94881 1.85310 1.72292 1.24910 1.06883 1.21008 1.10643 0.97712 0.95159 1.20627 0.99057 0.92811 0.97061 1.20870 1.03995 0.99862 0.92314 1.20956 0.97571 0.93290 0.99159 1.21495 1.04653 0.97290 0.95189 1.18507 0.94348 0.89771 0.93022 1.56707 1.58208 1.00552 1.05961 1.22576 0.99921 0.94678 0.89358 1.21827 1.00057 0.91587 1.01494 1.19044 0.97224 0.94268 0.90782 1.21156 1.39600 0.97805 0.97429 0.92747 1.25011 0.95408 0.98656 0.95253 1.69948 1.45564 1.35754 1.02126 0.86659 0.79685 0.84318 0.77358 1.20240 1.21253 1.20209 0.91715 0.91213 0.90782 0.90398 0.91565 0.91203 0.85952 0.85955 0.85916 0.84623 0.89592 0.93416 0.93030 0.92274 0.96437 0.96616 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 8.17 37.16 0.30 -2.22 16 2 C 0.08 1.15 2.06 -68.02 -0.14 1.01 16 3 H 0.12 1.66 5.69 -51.93 -0.30 1.37 16 4 C -0.07 -0.79 3.14 -26.34 -0.08 -0.87 16 5 H 0.10 1.33 8.14 -51.92 -0.42 0.90 16 6 C -0.13 -1.26 9.11 37.16 0.34 -0.93 16 7 S -0.14 -1.73 19.83 -107.50 -2.13 -3.86 16 8 C -0.13 -1.82 5.15 -39.01 -0.20 -2.03 16 9 C -0.07 -0.90 9.68 -39.34 -0.38 -1.28 16 10 C -0.15 -1.70 10.06 -39.64 -0.40 -2.10 16 11 C -0.09 -1.08 10.02 -39.72 -0.40 -1.48 16 12 C -0.16 -2.32 8.94 -39.15 -0.35 -2.67 16 13 C 0.15 2.24 5.33 -83.71 -0.45 1.80 16 14 N -0.50 -7.73 4.21 -163.96 -0.69 -8.42 16 15 C 0.06 0.98 3.99 -3.82 -0.02 0.97 16 16 C -0.11 -2.18 4.51 -26.73 -0.12 -2.31 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 22 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.06 0.92 6.84 -51.93 -0.36 0.57 16 27 H 0.07 0.80 6.84 -51.93 -0.36 0.45 16 28 H 0.07 1.03 5.27 -51.86 -0.27 0.76 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.64 6.84 -51.93 -0.36 0.29 16 32 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.91 5.40 -52.49 -0.28 1.62 16 36 H 0.09 1.44 5.72 -51.93 -0.30 1.14 16 37 H 0.05 0.81 6.91 -51.93 -0.36 0.45 16 38 H 0.05 0.97 6.45 -51.92 -0.33 0.64 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 332.94 15.07 5.02 5.02 Total: -1.00 -29.59 332.94 -10.79 -40.38 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.26 Total: 1.12 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -2.44 Total: -24.81 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.05 Total: -34.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.13 Total: -3.86 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.59 -10.79 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161119561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.738 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds