Wall clock time and date at job start Tue Mar 31 2020 06:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.53683 * 2 1 4 4 C 1.53744 * 109.59469 * 239.80408 * 2 1 3 5 5 H 1.09008 * 109.99024 * 191.48264 * 4 2 1 6 6 C 1.53002 * 109.99324 * 70.10948 * 4 2 1 7 7 S 1.81929 * 106.76079 * 310.79498 * 4 2 1 8 8 C 1.76633 * 101.85498 * 316.50580 * 7 4 2 9 9 C 1.39085 * 118.30629 * 191.57190 * 8 7 4 10 10 C 1.38038 * 120.47747 * 180.55911 * 9 8 7 11 11 C 1.38280 * 119.63101 * 0.11044 * 10 9 8 12 12 C 1.37818 * 120.21340 * 359.67897 * 11 10 9 13 13 C 1.38934 * 121.43695 * 11.67912 * 8 7 4 14 14 N 1.39118 * 124.92219 * 358.83487 * 13 8 7 15 15 C 1.46901 * 111.00076 * 153.27385 * 14 13 8 16 16 C 1.53002 * 109.46853 * 175.26725 * 15 14 13 17 17 C 1.53003 * 109.47047 * 185.65615 * 16 15 14 18 18 C 1.50697 * 109.46805 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00301 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99553 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99929 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00152 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46812 * 60.00253 * 22 20 18 24 24 H 1.48495 * 109.47360 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47050 * 300.00332 * 22 20 18 26 26 H 1.09006 * 109.47382 * 299.85256 * 1 2 3 27 27 H 1.09007 * 109.47325 * 59.84945 * 1 2 3 28 28 H 1.08996 * 109.47784 * 179.84678 * 1 2 3 29 29 H 1.08995 * 109.47456 * 59.99653 * 6 4 2 30 30 H 1.08999 * 109.46819 * 179.97438 * 6 4 2 31 31 H 1.09005 * 109.46570 * 299.99578 * 6 4 2 32 32 H 1.08004 * 119.75762 * 0.56864 * 9 8 7 33 33 H 1.08000 * 120.18990 * 180.10461 * 10 9 8 34 34 H 1.07999 * 119.89585 * 179.66428 * 11 10 9 35 35 H 1.07994 * 119.57314 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.46930 * 55.27288 * 15 14 13 37 37 H 1.08994 * 109.47043 * 295.27154 * 15 14 13 38 38 H 1.09007 * 109.46592 * 65.65709 * 16 15 14 39 39 H 1.08992 * 109.47459 * 305.65661 * 16 15 14 40 40 H 1.08994 * 109.47063 * 59.99974 * 17 16 15 41 41 H 1.09002 * 109.46780 * 299.99842 * 17 16 15 42 42 H 0.97004 * 119.99887 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0456 -0.7285 -1.2519 5 1 3.1163 -0.9120 -1.1618 6 6 1.7602 0.1097 -2.4996 7 16 1.1493 -2.3089 -1.3457 8 6 1.1938 -2.8516 0.3346 9 6 0.8116 -4.1590 0.6158 10 6 0.8183 -4.6265 1.9146 11 6 1.2062 -3.7859 2.9417 12 6 1.5904 -2.4905 2.6702 13 6 1.5961 -2.0041 1.3594 14 7 2.0168 -0.6893 1.1867 15 6 1.7686 0.1061 2.3965 16 6 2.3491 1.5096 2.2120 17 6 2.2166 2.2923 3.5200 18 6 2.7878 3.6749 3.3380 19 1 3.2034 3.9664 2.3847 20 6 2.7790 4.5681 4.3883 21 7 2.2724 4.2133 5.5490 22 14 3.4877 6.2818 4.1631 23 1 2.7462 6.9865 3.0866 24 1 3.3589 7.0414 5.4325 25 1 4.9217 6.1794 3.7913 26 1 -0.3634 0.5116 0.8913 27 1 -0.3634 0.5162 -0.8887 28 1 -0.3634 -1.0276 -0.0027 29 1 2.2625 1.0731 -2.4129 30 1 2.1293 -0.4141 -3.3814 31 1 0.6856 0.2673 -2.5934 32 1 0.5074 -4.8132 -0.1880 33 1 0.5222 -5.6431 2.1274 34 1 1.2079 -4.1455 3.9601 35 1 1.8910 -1.8428 3.4804 36 1 2.2445 -0.3744 3.2512 37 1 0.6950 0.1769 2.5708 38 1 1.8045 2.0271 1.4221 39 1 3.4015 1.4345 1.9386 40 1 2.7611 1.7749 4.3098 41 1 1.1641 2.3675 3.7933 42 1 2.2658 4.8419 6.2878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161119561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:58 Heat of formation + Delta-G solvation = 12.766774 kcal Electronic energy + Delta-G solvation = -21304.311521 eV Core-core repulsion = 18374.462041 eV Total energy + Delta-G solvation = -2929.849481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.55714 -38.69607 -36.18167 -34.93953 -33.36171 -32.09320 -30.86579 -29.69343 -28.11405 -26.25204 -24.65758 -23.39918 -23.16468 -22.30962 -20.51002 -18.57864 -18.43284 -17.59635 -17.20212 -16.70275 -16.48708 -16.46382 -15.43355 -15.28624 -15.03008 -14.87820 -14.71330 -14.28378 -13.75075 -13.66291 -13.59326 -13.29488 -13.27238 -12.96570 -12.91076 -12.65729 -12.47017 -12.43310 -12.21946 -12.00453 -11.87944 -11.52233 -11.30097 -11.20070 -11.00656 -10.79786 -10.55398 -10.49420 -8.97958 -8.20750 -8.14227 -6.31638 0.26726 0.41009 0.62264 1.35619 1.40296 1.42776 1.50657 2.37377 2.44664 2.83719 3.13046 3.39363 3.62805 3.87782 3.96521 4.07600 4.12327 4.20248 4.27468 4.31242 4.36483 4.43807 4.54201 4.61242 4.66783 4.71967 4.80563 4.85557 4.92774 4.96985 5.01082 5.07743 5.11542 5.19220 5.26487 5.37826 5.48445 5.59958 5.68258 5.78792 5.82464 5.94876 6.22836 6.30370 6.84412 7.37713 8.90929 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.004133 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.391751 B = 6773.209469 C = 7914.605543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.081 3.919 3 H 0.111 0.889 4 C -0.061 4.061 5 H 0.094 0.906 6 C -0.129 4.129 7 S -0.129 6.129 8 C -0.146 4.146 9 C -0.079 4.079 10 C -0.141 4.141 11 C -0.091 4.091 12 C -0.184 4.184 13 C 0.126 3.874 14 N -0.509 5.509 15 C 0.073 3.927 16 C -0.093 4.093 17 C 0.029 3.971 18 C -0.542 4.542 19 H 0.061 0.939 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.268 1.268 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.055 0.945 40 H -0.007 1.007 41 H -0.007 1.007 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -15.375 -13.568 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.129 0.871 4 C -0.190 4.190 5 H 0.112 0.888 6 C -0.188 4.188 7 S 0.114 5.886 8 C -0.261 4.261 9 C -0.102 4.102 10 C -0.161 4.161 11 C -0.111 4.111 12 C -0.206 4.206 13 C 0.021 3.979 14 N -0.221 5.221 15 C -0.051 4.051 16 C -0.131 4.131 17 C -0.009 4.009 18 C -0.580 4.580 19 H 0.079 0.921 20 C -0.196 4.196 21 N -0.573 5.573 22 Si 0.787 3.213 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.193 1.193 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.615 -15.697 -14.562 21.715 hybrid contribution 0.338 1.571 1.746 2.373 sum -3.277 -14.127 -12.816 19.353 Atomic orbital electron populations 1.22619 0.95056 1.03450 1.03066 1.21894 0.94717 0.98877 0.87204 0.87083 1.23747 1.01948 0.94481 0.98858 0.88760 1.21673 1.03639 0.99564 0.93892 1.85201 1.72278 1.25146 1.06016 1.21271 1.10763 0.98404 0.95656 1.20972 0.98550 0.92440 0.98233 1.21272 1.02226 1.01085 0.91560 1.21275 0.96606 0.92492 1.00741 1.21608 1.05698 0.98419 0.94869 1.18622 0.95890 0.89552 0.93817 1.56690 1.59057 1.00813 1.05503 1.22239 0.99135 0.93320 0.90427 1.21531 1.00172 0.92701 0.98684 1.18921 0.95072 0.94170 0.92713 1.21617 1.39593 0.99033 0.97785 0.92116 1.25943 0.95696 1.03109 0.94866 1.70085 1.46819 1.37322 1.03030 0.85538 0.79211 0.78983 0.77564 1.19075 1.20932 1.19262 0.93339 0.89373 0.91412 0.89510 0.90332 0.90709 0.84131 0.82710 0.83619 0.85525 0.90008 0.94035 0.92228 0.92586 0.98876 0.98911 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.76 8.17 71.98 0.59 -4.17 16 2 C 0.08 2.19 2.06 45.41 0.09 2.28 16 3 H 0.11 3.11 5.69 -2.39 -0.01 3.09 16 4 C -0.06 -1.41 3.14 30.85 0.10 -1.32 16 5 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 6 C -0.13 -2.20 9.11 71.98 0.66 -1.54 16 7 S -0.13 -3.09 19.83 -56.49 -1.12 -4.21 16 8 C -0.15 -3.95 5.15 22.64 0.12 -3.84 16 9 C -0.08 -1.80 9.68 22.43 0.22 -1.58 16 10 C -0.14 -2.85 10.06 22.23 0.22 -2.63 16 11 C -0.09 -2.06 10.02 22.18 0.22 -1.84 16 12 C -0.18 -5.22 8.94 22.55 0.20 -5.02 16 13 C 0.13 3.79 5.33 38.53 0.21 3.99 16 14 N -0.51 -15.83 4.21 -672.66 -2.83 -18.66 16 15 C 0.07 2.55 3.99 86.30 0.34 2.90 16 16 C -0.09 -3.73 4.51 30.60 0.14 -3.59 16 17 C 0.03 1.49 4.97 29.85 0.15 1.64 16 18 C -0.54 -30.39 9.11 25.60 0.23 -30.15 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 20 C 0.00 0.10 5.46 84.66 0.46 0.57 16 21 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 22 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H 0.05 1.40 6.84 -2.38 -0.02 1.38 16 27 H 0.09 1.91 6.84 -2.38 -0.02 1.89 16 28 H 0.07 1.85 5.27 -2.44 -0.01 1.84 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.21 6.84 -2.38 -0.02 1.19 16 32 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.13 3.72 5.40 -2.91 -0.02 3.70 16 36 H 0.08 2.89 5.72 -2.39 -0.01 2.87 16 37 H 0.04 1.47 6.91 -2.39 -0.02 1.46 16 38 H 0.06 2.28 6.45 -2.38 -0.02 2.26 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -63.97 332.94 3.31 -60.66 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.00 Total: 16.76 kcal Atomic # 6 Polarization: -48.26 SS G_CDS: 3.95 Total: -44.31 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -2.55 Total: -74.66 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -1.12 Total: -4.21 kcal Total: -63.97 3.31 -60.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161119561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.431 kcal (2) G-P(sol) polarization free energy of solvation -63.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds