Wall clock time and date at job start Tue Mar 31 2020 06:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.97831 * 2 1 4 4 S 1.81929 * 109.99318 * 238.70792 * 2 1 3 5 5 C 1.76629 * 101.86129 * 197.19739 * 4 2 1 6 6 C 1.39080 * 118.30740 * 191.70562 * 5 4 2 7 7 C 1.38044 * 120.47600 * 180.44889 * 6 5 4 8 8 C 1.38277 * 119.62865 * 0.16308 * 7 6 5 9 9 C 1.37813 * 120.21653 * 359.69448 * 8 7 6 10 10 C 1.38938 * 121.43647 * 11.77114 * 5 4 2 11 11 N 1.39120 * 124.90847 * 358.63632 * 10 5 4 12 12 C 1.46903 * 110.99549 * 153.44618 * 11 10 5 13 13 C 1.53007 * 109.47058 * 295.98894 * 12 11 10 14 14 C 1.52996 * 109.46934 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47296 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99498 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00375 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99755 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00153 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47133 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47476 * 120.00110 * 19 17 15 22 22 H 1.48507 * 109.47041 * 239.99544 * 19 17 15 23 23 C 1.45604 * 116.56961 * 25.05170 * 11 10 5 24 24 H 1.09002 * 109.53893 * 57.41946 * 23 11 10 25 25 C 1.52998 * 109.53571 * 177.65321 * 23 11 10 26 26 H 1.08999 * 109.47120 * 181.29470 * 1 2 3 27 27 H 1.09002 * 109.46771 * 301.29100 * 1 2 3 28 28 H 1.09002 * 109.46988 * 61.28575 * 1 2 3 29 29 H 1.07999 * 119.76279 * 0.44886 * 6 5 4 30 30 H 1.07996 * 120.18330 * 180.17699 * 7 6 5 31 31 H 1.08004 * 119.88906 * 179.66960 * 8 7 6 32 32 H 1.08003 * 119.57434 * 179.97438 * 9 8 7 33 33 H 1.08994 * 109.47091 * 55.99135 * 12 11 10 34 34 H 1.08996 * 109.46929 * 175.99155 * 12 11 10 35 35 H 1.08993 * 109.46888 * 300.00303 * 13 12 11 36 36 H 1.08996 * 109.47037 * 60.00328 * 13 12 11 37 37 H 1.09004 * 109.47409 * 300.00558 * 14 13 12 38 38 H 1.09005 * 109.47197 * 60.00095 * 14 13 12 39 39 H 0.97002 * 119.99777 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47528 * 179.61312 * 25 23 11 41 41 H 1.08997 * 109.47242 * 299.61319 * 25 23 11 42 42 H 1.09002 * 109.47005 * 59.60987 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9024 1.0244 0.0000 4 16 2.1520 -0.8880 -1.4609 5 6 3.8280 -1.2087 -1.0046 6 6 4.7027 -1.6649 -1.9849 7 6 6.0199 -1.9385 -1.6755 8 6 6.4691 -1.7599 -0.3800 9 6 5.6088 -1.3054 0.5960 10 6 4.2741 -1.0158 0.2970 11 7 3.4919 -0.5402 1.3445 12 6 3.9964 -1.0198 2.6381 13 6 3.8760 -2.5439 2.6991 14 6 4.4009 -3.0434 4.0467 15 6 4.2828 -4.5446 4.1066 16 1 3.8739 -5.0879 3.2676 17 6 4.6959 -5.2242 5.2328 18 7 5.1934 -4.5624 6.2547 19 14 4.5502 -7.0850 5.3068 20 1 3.9637 -7.5864 4.0380 21 1 5.8973 -7.6798 5.4991 22 1 3.6734 -7.4681 6.4424 23 6 2.0557 -0.7525 1.2334 24 1 1.8520 -1.8178 1.1245 25 6 1.3615 -0.2232 2.4899 26 1 -0.3633 -1.0274 0.0232 27 1 -0.3633 0.5338 0.8782 28 1 -0.3633 0.4937 -0.9013 29 1 4.3489 -1.8061 -2.9955 30 1 6.6958 -2.2898 -2.4410 31 1 7.4975 -1.9778 -0.1321 32 1 5.9706 -1.1701 1.6046 33 1 5.0421 -0.7332 2.7491 34 1 3.4108 -0.5766 3.4435 35 1 2.8303 -2.8304 2.5881 36 1 4.4616 -2.9872 1.8938 37 1 5.4466 -2.7567 4.1582 38 1 3.8148 -2.6001 4.8518 39 1 5.4843 -5.0406 7.0469 40 1 0.2859 -0.3764 2.4027 41 1 1.7349 -0.7573 3.3636 42 1 1.5693 0.8413 2.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161119692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:03 Heat of formation + Delta-G solvation = 27.218214 kcal Electronic energy + Delta-G solvation = -21544.273641 eV Core-core repulsion = 18615.050822 eV Total energy + Delta-G solvation = -2929.222819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.39185 -37.61151 -34.79784 -33.33688 -31.59177 -30.77482 -30.09060 -27.98915 -26.84851 -24.93632 -23.02843 -22.25721 -21.67668 -20.86583 -19.36105 -17.87783 -16.69671 -16.42056 -16.03264 -15.57165 -14.84789 -14.51496 -14.21232 -13.94727 -13.90058 -13.58097 -13.30325 -12.69041 -12.55254 -12.50709 -12.25109 -12.09959 -12.02615 -11.81407 -11.48746 -11.21312 -11.04852 -10.94141 -10.71140 -10.59991 -10.55591 -10.04321 -9.93529 -9.62057 -9.55885 -9.28201 -9.08961 -8.39171 -7.84612 -7.03666 -6.04009 -4.06321 1.39811 1.55451 1.64538 2.41324 3.28372 3.36204 3.40869 3.56857 3.99978 4.39229 4.43606 4.74516 4.88458 4.96780 5.14176 5.20873 5.27312 5.32090 5.41432 5.44382 5.49500 5.53630 5.65141 5.66487 5.74809 5.77835 5.86482 5.96881 6.01200 6.11456 6.20331 6.22088 6.41104 6.51514 6.65750 6.74289 6.88822 6.98838 7.17130 7.45078 7.60300 7.72674 7.94691 8.38089 9.00250 9.58273 11.07044 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.004911 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.340979 B = 5700.407427 C = 6563.708074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 H 0.101 0.899 4 S -0.144 6.144 5 C -0.128 4.128 6 C -0.075 4.075 7 C -0.145 4.145 8 C -0.090 4.090 9 C -0.149 4.149 10 C 0.149 3.851 11 N -0.507 5.507 12 C 0.048 3.952 13 C -0.142 4.142 14 C 0.028 3.972 15 C -0.519 4.519 16 H 0.053 0.947 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.092 3.908 24 H 0.069 0.931 25 C -0.151 4.151 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 10.707 -13.344 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 H 0.120 0.880 4 S 0.098 5.902 5 C -0.243 4.243 6 C -0.098 4.098 7 C -0.166 4.166 8 C -0.111 4.111 9 C -0.172 4.172 10 C 0.044 3.956 11 N -0.219 5.219 12 C -0.076 4.076 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.016 4.016 24 H 0.087 0.913 25 C -0.210 4.210 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.154 0.846 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.840 10.936 -14.128 18.796 hybrid contribution 0.722 -1.440 1.211 2.015 sum -5.118 9.496 -12.917 16.829 Atomic orbital electron populations 1.21690 0.91128 1.03448 1.02921 1.23660 0.99615 1.01891 0.94160 0.88027 1.85383 1.05986 1.71809 1.26998 1.20963 0.97104 1.11007 0.95273 1.20596 0.92848 0.98767 0.97589 1.20873 0.95237 1.03670 0.96849 1.20964 0.99524 0.97758 0.92811 1.21462 0.92272 1.02721 1.00706 1.18402 0.93239 0.94481 0.89521 1.56826 1.03242 1.58399 1.03407 1.22691 1.01237 0.96430 0.87205 1.22243 1.00905 0.92700 1.02197 1.18997 0.96183 0.95855 0.89957 1.21246 1.41248 0.92236 1.00957 0.92828 1.25000 0.95250 0.98341 0.95729 1.69968 1.42572 1.35411 1.05506 0.86569 0.77783 0.85875 0.78017 1.19761 1.20941 1.20977 1.21637 0.85638 0.99105 0.95235 0.91272 1.22089 1.00299 1.02045 0.96572 0.91288 0.90269 0.91654 0.86017 0.85953 0.85841 0.84584 0.89782 0.89364 0.93297 0.92511 0.96530 0.96616 0.93043 0.91119 0.90581 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.53 37.16 0.32 -0.91 16 2 C -0.06 -0.77 3.00 -26.34 -0.08 -0.85 16 3 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 4 S -0.14 -1.99 21.52 -107.50 -2.31 -4.31 16 5 C -0.13 -1.99 6.05 -39.01 -0.24 -2.23 16 6 C -0.07 -1.05 9.68 -39.34 -0.38 -1.43 16 7 C -0.15 -1.92 10.06 -39.64 -0.40 -2.32 16 8 C -0.09 -1.27 10.02 -39.72 -0.40 -1.67 16 9 C -0.15 -2.37 7.58 -39.15 -0.30 -2.67 16 10 C 0.15 2.41 5.25 -83.71 -0.44 1.97 16 11 N -0.51 -7.79 4.24 -163.96 -0.70 -8.48 16 12 C 0.05 0.80 4.30 -3.82 -0.02 0.78 16 13 C -0.14 -2.86 4.56 -26.73 -0.12 -2.98 16 14 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.09 1.26 1.59 -68.02 -0.11 1.15 16 24 H 0.07 1.10 6.95 -51.93 -0.36 0.74 16 25 C -0.15 -1.77 7.95 37.16 0.30 -1.47 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.61 6.56 -51.93 -0.34 0.27 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.14 2.16 5.39 -52.48 -0.28 1.87 16 33 H 0.08 1.37 5.76 -51.93 -0.30 1.07 16 34 H 0.09 1.38 5.71 -51.93 -0.30 1.09 16 35 H 0.05 1.00 6.84 -51.93 -0.36 0.65 16 36 H 0.06 1.21 6.32 -51.93 -0.33 0.88 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.07 0.69 6.44 -51.93 -0.33 0.35 16 41 H 0.08 1.01 6.16 -51.93 -0.32 0.69 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -30.34 333.24 -10.95 -41.29 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.26 Total: 1.08 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -2.41 Total: -25.44 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.04 Total: -34.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.31 Total: -4.31 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.34 -10.95 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161119692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.511 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds