Wall clock time and date at job start Tue Mar 31 2020 06:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.97831 * 2 1 4 4 S 1.81929 * 109.99318 * 238.70792 * 2 1 3 5 5 C 1.76629 * 101.86129 * 197.19739 * 4 2 1 6 6 C 1.39080 * 118.30740 * 191.70562 * 5 4 2 7 7 C 1.38044 * 120.47600 * 180.44889 * 6 5 4 8 8 C 1.38277 * 119.62865 * 0.16308 * 7 6 5 9 9 C 1.37813 * 120.21653 * 359.69448 * 8 7 6 10 10 C 1.38938 * 121.43647 * 11.77114 * 5 4 2 11 11 N 1.39120 * 124.90847 * 358.63632 * 10 5 4 12 12 C 1.46903 * 110.99549 * 153.44618 * 11 10 5 13 13 C 1.53007 * 109.47058 * 295.98894 * 12 11 10 14 14 C 1.52996 * 109.46934 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47296 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99498 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00375 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99755 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00153 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47133 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47476 * 120.00110 * 19 17 15 22 22 H 1.48507 * 109.47041 * 239.99544 * 19 17 15 23 23 C 1.45604 * 116.56961 * 25.05170 * 11 10 5 24 24 H 1.09002 * 109.53893 * 57.41946 * 23 11 10 25 25 C 1.52998 * 109.53571 * 177.65321 * 23 11 10 26 26 H 1.08999 * 109.47120 * 181.29470 * 1 2 3 27 27 H 1.09002 * 109.46771 * 301.29100 * 1 2 3 28 28 H 1.09002 * 109.46988 * 61.28575 * 1 2 3 29 29 H 1.07999 * 119.76279 * 0.44886 * 6 5 4 30 30 H 1.07996 * 120.18330 * 180.17699 * 7 6 5 31 31 H 1.08004 * 119.88906 * 179.66960 * 8 7 6 32 32 H 1.08003 * 119.57434 * 179.97438 * 9 8 7 33 33 H 1.08994 * 109.47091 * 55.99135 * 12 11 10 34 34 H 1.08996 * 109.46929 * 175.99155 * 12 11 10 35 35 H 1.08993 * 109.46888 * 300.00303 * 13 12 11 36 36 H 1.08996 * 109.47037 * 60.00328 * 13 12 11 37 37 H 1.09004 * 109.47409 * 300.00558 * 14 13 12 38 38 H 1.09005 * 109.47197 * 60.00095 * 14 13 12 39 39 H 0.97002 * 119.99777 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47528 * 179.61312 * 25 23 11 41 41 H 1.08997 * 109.47242 * 299.61319 * 25 23 11 42 42 H 1.09002 * 109.47005 * 59.60987 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9024 1.0244 0.0000 4 16 2.1520 -0.8880 -1.4609 5 6 3.8280 -1.2087 -1.0046 6 6 4.7027 -1.6649 -1.9849 7 6 6.0199 -1.9385 -1.6755 8 6 6.4691 -1.7599 -0.3800 9 6 5.6088 -1.3054 0.5960 10 6 4.2741 -1.0158 0.2970 11 7 3.4919 -0.5402 1.3445 12 6 3.9964 -1.0198 2.6381 13 6 3.8760 -2.5439 2.6991 14 6 4.4009 -3.0434 4.0467 15 6 4.2828 -4.5446 4.1066 16 1 3.8739 -5.0879 3.2676 17 6 4.6959 -5.2242 5.2328 18 7 5.1934 -4.5624 6.2547 19 14 4.5502 -7.0850 5.3068 20 1 3.9637 -7.5864 4.0380 21 1 5.8973 -7.6798 5.4991 22 1 3.6734 -7.4681 6.4424 23 6 2.0557 -0.7525 1.2334 24 1 1.8520 -1.8178 1.1245 25 6 1.3615 -0.2232 2.4899 26 1 -0.3633 -1.0274 0.0232 27 1 -0.3633 0.5338 0.8782 28 1 -0.3633 0.4937 -0.9013 29 1 4.3489 -1.8061 -2.9955 30 1 6.6958 -2.2898 -2.4410 31 1 7.4975 -1.9778 -0.1321 32 1 5.9706 -1.1701 1.6046 33 1 5.0421 -0.7332 2.7491 34 1 3.4108 -0.5766 3.4435 35 1 2.8303 -2.8304 2.5881 36 1 4.4616 -2.9872 1.8938 37 1 5.4466 -2.7567 4.1582 38 1 3.8148 -2.6001 4.8518 39 1 5.4843 -5.0406 7.0469 40 1 0.2859 -0.3764 2.4027 41 1 1.7349 -0.7573 3.3636 42 1 1.5693 0.8413 2.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161119692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:02 Heat of formation + Delta-G solvation = 11.811176 kcal Electronic energy + Delta-G solvation = -21544.941740 eV Core-core repulsion = 18615.050822 eV Total energy + Delta-G solvation = -2929.890919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57752 -38.71757 -36.25815 -35.01493 -33.22379 -31.96325 -31.27355 -29.17738 -28.32134 -26.35712 -24.49637 -23.34713 -22.89004 -22.48648 -20.60460 -19.01628 -18.53545 -17.72870 -17.20387 -16.83720 -16.51423 -15.95380 -15.54941 -15.08595 -15.01851 -14.79796 -14.50226 -14.34952 -13.88373 -13.73488 -13.57460 -13.20465 -13.11461 -12.96346 -12.83426 -12.78532 -12.59368 -12.44977 -12.13807 -12.10818 -11.69023 -11.60028 -11.46525 -11.35635 -10.99487 -10.74949 -10.60571 -10.49942 -9.01587 -8.25268 -8.15101 -6.33779 0.26785 0.41186 0.60074 1.34499 1.36062 1.37070 1.49687 2.37269 2.42587 2.85768 3.09895 3.37822 3.65370 3.88789 3.94033 4.07002 4.12575 4.22391 4.25850 4.34319 4.39675 4.42146 4.53669 4.56879 4.71767 4.74494 4.83244 4.85919 4.90092 4.96190 5.03592 5.07564 5.12952 5.19864 5.29596 5.36858 5.47006 5.59720 5.66448 5.76260 5.81031 5.94167 6.22219 6.27922 6.81301 7.35362 8.88132 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.004911 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.340979 B = 5700.407427 C = 6563.708074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.054 4.054 3 H 0.103 0.897 4 S -0.152 6.152 5 C -0.146 4.146 6 C -0.083 4.083 7 C -0.140 4.140 8 C -0.097 4.097 9 C -0.170 4.170 10 C 0.125 3.875 11 N -0.503 5.503 12 C 0.060 3.940 13 C -0.119 4.119 14 C 0.035 3.965 15 C -0.542 4.542 16 H 0.048 0.952 17 C 0.006 3.994 18 N -0.928 5.928 19 Si 0.958 3.042 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.275 1.275 23 C 0.089 3.911 24 H 0.044 0.956 25 C -0.147 4.147 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.043 0.957 36 H 0.043 0.957 37 H -0.004 1.004 38 H -0.001 1.001 39 H 0.264 0.736 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 10.668 -14.481 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.184 4.184 3 H 0.121 0.879 4 S 0.090 5.910 5 C -0.261 4.261 6 C -0.106 4.106 7 C -0.160 4.160 8 C -0.118 4.118 9 C -0.192 4.192 10 C 0.021 3.979 11 N -0.215 5.215 12 C -0.064 4.064 13 C -0.158 4.158 14 C -0.003 4.003 15 C -0.580 4.580 16 H 0.067 0.933 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.019 4.019 24 H 0.062 0.938 25 C -0.205 4.205 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.158 0.842 30 H 0.172 0.828 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.014 0.986 38 H 0.017 0.983 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.607 10.905 -15.285 19.905 hybrid contribution 0.988 -1.427 1.521 2.308 sum -5.620 9.478 -13.764 17.631 Atomic orbital electron populations 1.21732 0.88741 1.03780 1.04547 1.23731 1.01356 1.01123 0.92151 0.87851 1.85319 1.05211 1.72226 1.28213 1.21265 0.98308 1.11155 0.95386 1.20951 0.93181 0.98252 0.98195 1.21256 0.95421 1.02237 0.97096 1.21276 1.00279 0.97195 0.93036 1.21567 0.92822 1.03900 1.00928 1.18593 0.93553 0.95654 0.90124 1.56922 1.04013 1.58070 1.02457 1.22465 1.01690 0.93606 0.88670 1.21926 0.99718 0.95381 0.98737 1.18854 0.94770 0.94665 0.92016 1.21618 1.41474 0.93871 1.01055 0.93328 1.25859 0.94700 1.03360 0.95271 1.70075 1.43186 1.37441 1.06107 0.85504 0.78111 0.79820 0.78281 1.19257 1.20149 1.20031 1.21723 0.84946 0.98077 0.97160 0.93841 1.22080 1.01440 1.02397 0.94598 0.91607 0.88144 0.90450 0.84230 0.82808 0.83984 0.85511 0.89818 0.88375 0.93839 0.93856 0.98572 0.98304 0.92665 0.88762 0.92460 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.53 71.98 0.61 -1.47 16 2 C -0.05 -1.24 3.00 30.85 0.09 -1.14 16 3 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 4 S -0.15 -4.07 21.52 -56.49 -1.22 -5.29 16 5 C -0.15 -4.47 6.05 22.64 0.14 -4.34 16 6 C -0.08 -2.22 9.68 22.43 0.22 -2.01 16 7 C -0.14 -3.45 10.06 22.23 0.22 -3.22 16 8 C -0.10 -2.69 10.02 22.18 0.22 -2.46 16 9 C -0.17 -5.47 7.58 22.55 0.17 -5.30 16 10 C 0.13 4.09 5.25 38.53 0.20 4.29 16 11 N -0.50 -15.50 4.24 -672.66 -2.85 -18.35 16 12 C 0.06 2.04 4.30 86.30 0.37 2.42 16 13 C -0.12 -4.96 4.56 30.60 0.14 -4.82 16 14 C 0.03 1.80 4.97 29.85 0.15 1.95 16 15 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 17 C 0.01 0.36 5.46 84.65 0.46 0.83 16 18 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 19 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 C 0.09 2.40 1.59 45.41 0.07 2.47 16 24 H 0.04 1.40 6.95 -2.39 -0.02 1.38 16 25 C -0.15 -3.24 7.95 71.98 0.57 -2.67 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.22 6.56 -2.39 -0.02 1.21 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 32 H 0.13 4.20 5.39 -2.91 -0.02 4.18 16 33 H 0.08 2.84 5.76 -2.39 -0.01 2.82 16 34 H 0.10 3.12 5.71 -2.39 -0.01 3.10 16 35 H 0.04 1.84 6.84 -2.39 -0.02 1.82 16 36 H 0.04 1.91 6.32 -2.39 -0.02 1.89 16 37 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 38 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 39 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.09 1.62 6.44 -2.39 -0.02 1.60 16 41 H 0.06 1.49 6.16 -2.39 -0.01 1.48 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -65.79 333.24 3.12 -62.67 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.00 Total: 16.32 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 3.88 Total: -46.42 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -2.57 Total: -73.86 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -1.22 Total: -5.29 kcal Total: -65.79 3.12 -62.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161119692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.479 kcal (2) G-P(sol) polarization free energy of solvation -65.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds