Wall clock time and date at job start Tue Mar 31 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.96731 * 2 1 4 4 S 1.81927 * 109.98231 * 121.26931 * 2 1 3 5 5 C 1.76896 * 101.78213 * 162.79866 * 4 2 1 6 6 C 1.39082 * 118.29132 * 168.66977 * 5 4 2 7 7 C 1.38038 * 120.47015 * 178.26192 * 6 5 4 8 8 C 1.38280 * 119.63798 * 0.02877 * 7 6 5 9 9 C 1.37821 * 120.21531 * 0.45901 * 8 7 6 10 10 C 1.38936 * 121.45769 * 347.82786 * 5 4 2 11 11 N 1.39123 * 124.85503 * 2.35589 * 10 5 4 12 12 C 1.46901 * 110.99633 * 102.31067 * 11 10 5 13 13 C 1.53000 * 109.47448 * 38.77130 * 12 11 10 14 14 C 1.52999 * 109.47609 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47209 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00242 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99664 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99559 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00295 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47011 * 89.99923 * 19 17 15 21 21 H 1.48498 * 109.47227 * 209.99763 * 19 17 15 22 22 H 1.48502 * 109.47151 * 330.00148 * 19 17 15 23 23 C 1.45632 * 116.48982 * 333.98454 * 11 10 5 24 24 H 1.09004 * 109.53368 * 302.93841 * 23 11 10 25 25 C 1.53002 * 109.60381 * 182.73859 * 23 11 10 26 26 H 1.08998 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47472 * 300.00459 * 1 2 3 28 28 H 1.09002 * 109.47143 * 60.00039 * 1 2 3 29 29 H 1.08007 * 119.75960 * 358.21950 * 6 5 4 30 30 H 1.08005 * 120.18360 * 180.02562 * 7 6 5 31 31 H 1.07996 * 119.89073 * 180.47651 * 8 7 6 32 32 H 1.08000 * 119.58253 * 179.90458 * 9 8 7 33 33 H 1.09003 * 109.47442 * 158.77180 * 12 11 10 34 34 H 1.09001 * 109.47277 * 278.77001 * 12 11 10 35 35 H 1.09003 * 109.46840 * 300.00419 * 13 12 11 36 36 H 1.09001 * 109.46987 * 59.99693 * 13 12 11 37 37 H 1.09001 * 109.46787 * 300.00107 * 14 13 12 38 38 H 1.08998 * 109.46779 * 59.99658 * 14 13 12 39 39 H 0.97009 * 119.99184 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47274 * 300.36819 * 25 23 11 41 41 H 1.09002 * 109.47112 * 60.36419 * 25 23 11 42 42 H 1.09003 * 109.47000 * 180.36247 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9022 1.0245 0.0000 4 16 2.1517 -0.8875 1.4614 5 6 3.8297 -1.2080 1.0025 6 6 4.7035 -1.6713 1.9804 7 6 6.0135 -1.9700 1.6639 8 6 6.4576 -1.8058 0.3647 9 6 5.6002 -1.3375 -0.6074 10 6 4.2729 -1.0230 -0.3012 11 7 3.4919 -0.5375 -1.3451 12 6 3.7959 0.8736 -1.6178 13 6 5.3018 1.1068 -1.4804 14 6 5.6184 2.5766 -1.7638 15 6 7.1016 2.8062 -1.6277 16 1 7.7533 1.9858 -1.3658 17 6 7.6266 4.0635 -1.8387 18 7 8.9210 4.2640 -1.7195 19 14 6.4995 5.4824 -2.2925 20 1 6.0307 6.1572 -1.0555 21 1 7.2416 6.4540 -3.1354 22 1 5.3303 4.9640 -3.0471 23 6 2.0554 -0.7499 -1.2348 24 1 1.8517 -1.8155 -1.1284 25 6 1.3601 -0.2190 -2.4901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.3547 -1.7977 2.9947 30 1 6.6880 -2.3299 2.4268 31 1 7.4796 -2.0455 0.1109 32 1 5.9583 -1.2117 -1.6185 33 1 3.4805 1.1242 -2.6307 34 1 3.2641 1.5042 -0.9053 35 1 5.6173 0.8562 -0.4675 36 1 5.8336 0.4762 -2.1929 37 1 5.3028 2.8274 -2.7765 38 1 5.0866 3.2067 -1.0509 39 1 9.2904 5.1486 -1.8684 40 1 1.5669 0.8457 -2.5972 41 1 1.7334 -0.7514 -3.3649 42 1 0.2846 -0.3733 -2.4025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161119820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:11 Heat of formation + Delta-G solvation = 31.789872 kcal Electronic energy + Delta-G solvation = -21660.994386 eV Core-core repulsion = 18731.969809 eV Total energy + Delta-G solvation = -2929.024577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41718 -37.70810 -34.76081 -33.20554 -31.66865 -30.72492 -30.21613 -28.41762 -26.96665 -24.90075 -23.18119 -22.31765 -21.91394 -20.24799 -19.62335 -17.42759 -16.78237 -16.51304 -16.02598 -15.76313 -15.16449 -14.70505 -14.44610 -14.04950 -13.82972 -13.57148 -13.10654 -12.75666 -12.63948 -12.54391 -12.38369 -12.18325 -12.03070 -11.89327 -11.80789 -11.46570 -11.23038 -10.91367 -10.85844 -10.60449 -10.23725 -9.88208 -9.78725 -9.65937 -9.63209 -9.23496 -8.91388 -8.54421 -7.88407 -7.34001 -6.04873 -4.02591 1.35342 1.51734 1.57634 2.32822 3.28954 3.36379 3.39046 3.61275 3.89446 4.32674 4.43957 4.68970 4.78871 5.01039 5.03926 5.15962 5.20332 5.28546 5.34036 5.42446 5.44503 5.49556 5.57705 5.61934 5.65503 5.73061 5.74649 5.92624 6.00131 6.08411 6.10377 6.28191 6.41703 6.46556 6.53538 6.71261 6.82177 6.93972 7.06147 7.26213 7.38322 7.53288 7.78124 8.53673 9.00374 9.57649 11.08637 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.005474 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.957061 B = 5114.152464 C = 6182.152176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 H 0.101 0.899 4 S -0.140 6.140 5 C -0.116 4.116 6 C -0.093 4.093 7 C -0.118 4.118 8 C -0.110 4.110 9 C -0.087 4.087 10 C 0.118 3.882 11 N -0.510 5.510 12 C 0.055 3.945 13 C -0.110 4.110 14 C -0.011 4.011 15 C -0.517 4.517 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.096 3.904 24 H 0.093 0.907 25 C -0.146 4.146 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.008 0.992 39 H 0.263 0.737 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.715 -12.402 3.126 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.241 4.241 3 H 0.119 0.881 4 S 0.103 5.897 5 C -0.231 4.231 6 C -0.116 4.116 7 C -0.138 4.138 8 C -0.131 4.131 9 C -0.108 4.108 10 C 0.016 3.984 11 N -0.226 5.226 12 C -0.069 4.069 13 C -0.148 4.148 14 C -0.049 4.049 15 C -0.555 4.555 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.014 4.014 24 H 0.112 0.888 25 C -0.204 4.204 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.188 -12.732 3.725 20.929 hybrid contribution 0.093 1.659 -0.570 1.756 sum -16.096 -11.073 3.155 19.790 Atomic orbital electron populations 1.21636 0.91096 1.03127 1.02951 1.24311 1.00552 1.02717 0.96528 0.88071 1.85484 1.05617 1.71249 1.27310 1.21602 0.97430 1.08802 0.95301 1.20609 0.93064 1.00258 0.97673 1.20982 0.94952 1.01112 0.96796 1.21035 0.99743 0.99246 0.93058 1.21368 0.91863 0.97020 1.00591 1.18231 0.93691 0.99550 0.86941 1.57486 1.06006 1.20016 1.39063 1.22495 0.99413 0.83875 1.01079 1.21934 0.91345 0.99698 1.01807 1.19535 0.97790 0.91494 0.96043 1.21090 0.90850 0.96288 1.47247 0.90973 1.25021 0.94865 0.98683 0.94874 1.69919 1.11366 1.22692 1.50239 0.86802 0.81298 0.82465 0.78855 1.20389 1.21344 1.19077 1.21836 0.85884 1.00092 0.93564 0.88845 1.21972 0.99879 1.02057 0.96522 0.91428 0.91850 0.90354 0.86056 0.85729 0.85544 0.84717 0.89975 0.94272 0.91935 0.91521 0.96617 0.97406 0.92768 0.91738 0.91145 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 8.58 37.16 0.32 -0.83 16 2 C -0.11 -1.32 2.80 -26.35 -0.07 -1.39 16 3 H 0.10 1.36 5.94 -51.93 -0.31 1.05 16 4 S -0.14 -1.91 21.55 -107.50 -2.32 -4.23 16 5 C -0.12 -1.79 6.06 -39.01 -0.24 -2.03 16 6 C -0.09 -1.32 9.68 -39.34 -0.38 -1.70 16 7 C -0.12 -1.59 10.06 -39.64 -0.40 -1.99 16 8 C -0.11 -1.58 10.02 -39.72 -0.40 -1.98 16 9 C -0.09 -1.38 6.92 -39.15 -0.27 -1.65 16 10 C 0.12 1.87 4.39 -83.71 -0.37 1.50 16 11 N -0.51 -7.53 4.24 -163.95 -0.69 -8.23 16 12 C 0.06 0.90 4.31 -3.82 -0.02 0.88 16 13 C -0.11 -2.19 3.66 -26.73 -0.10 -2.29 16 14 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 15 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 19 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 23 C 0.10 1.16 2.36 -68.02 -0.16 1.00 16 24 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 25 C -0.15 -1.43 8.17 37.16 0.30 -1.12 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.58 6.47 -51.93 -0.34 0.24 16 29 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.14 2.13 6.37 -52.49 -0.33 1.80 16 33 H 0.08 1.26 6.82 -51.93 -0.35 0.90 16 34 H 0.04 0.65 5.85 -51.93 -0.30 0.34 16 35 H 0.06 1.32 5.96 -51.93 -0.31 1.01 16 36 H 0.07 1.32 6.47 -51.93 -0.34 0.98 16 37 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 38 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.06 0.66 6.52 -51.93 -0.34 0.33 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.52 6.41 -51.93 -0.33 0.19 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -31.08 328.68 -10.54 -41.62 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.26 Total: 1.13 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -2.32 Total: -25.21 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.08 Total: -35.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -2.32 Total: -4.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.08 -10.54 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161119820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.409 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds