Wall clock time and date at job start Tue Mar 31 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.96731 * 2 1 4 4 S 1.81927 * 109.98231 * 121.26931 * 2 1 3 5 5 C 1.76896 * 101.78213 * 162.79866 * 4 2 1 6 6 C 1.39082 * 118.29132 * 168.66977 * 5 4 2 7 7 C 1.38038 * 120.47015 * 178.26192 * 6 5 4 8 8 C 1.38280 * 119.63798 * 0.02877 * 7 6 5 9 9 C 1.37821 * 120.21531 * 0.45901 * 8 7 6 10 10 C 1.38936 * 121.45769 * 347.82786 * 5 4 2 11 11 N 1.39123 * 124.85503 * 2.35589 * 10 5 4 12 12 C 1.46901 * 110.99633 * 102.31067 * 11 10 5 13 13 C 1.53000 * 109.47448 * 38.77130 * 12 11 10 14 14 C 1.52999 * 109.47609 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47209 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00242 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99664 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99559 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00295 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47011 * 89.99923 * 19 17 15 21 21 H 1.48498 * 109.47227 * 209.99763 * 19 17 15 22 22 H 1.48502 * 109.47151 * 330.00148 * 19 17 15 23 23 C 1.45632 * 116.48982 * 333.98454 * 11 10 5 24 24 H 1.09004 * 109.53368 * 302.93841 * 23 11 10 25 25 C 1.53002 * 109.60381 * 182.73859 * 23 11 10 26 26 H 1.08998 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47472 * 300.00459 * 1 2 3 28 28 H 1.09002 * 109.47143 * 60.00039 * 1 2 3 29 29 H 1.08007 * 119.75960 * 358.21950 * 6 5 4 30 30 H 1.08005 * 120.18360 * 180.02562 * 7 6 5 31 31 H 1.07996 * 119.89073 * 180.47651 * 8 7 6 32 32 H 1.08000 * 119.58253 * 179.90458 * 9 8 7 33 33 H 1.09003 * 109.47442 * 158.77180 * 12 11 10 34 34 H 1.09001 * 109.47277 * 278.77001 * 12 11 10 35 35 H 1.09003 * 109.46840 * 300.00419 * 13 12 11 36 36 H 1.09001 * 109.46987 * 59.99693 * 13 12 11 37 37 H 1.09001 * 109.46787 * 300.00107 * 14 13 12 38 38 H 1.08998 * 109.46779 * 59.99658 * 14 13 12 39 39 H 0.97009 * 119.99184 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47274 * 300.36819 * 25 23 11 41 41 H 1.09002 * 109.47112 * 60.36419 * 25 23 11 42 42 H 1.09003 * 109.47000 * 180.36247 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9022 1.0245 0.0000 4 16 2.1517 -0.8875 1.4614 5 6 3.8297 -1.2080 1.0025 6 6 4.7035 -1.6713 1.9804 7 6 6.0135 -1.9700 1.6639 8 6 6.4576 -1.8058 0.3647 9 6 5.6002 -1.3375 -0.6074 10 6 4.2729 -1.0230 -0.3012 11 7 3.4919 -0.5375 -1.3451 12 6 3.7959 0.8736 -1.6178 13 6 5.3018 1.1068 -1.4804 14 6 5.6184 2.5766 -1.7638 15 6 7.1016 2.8062 -1.6277 16 1 7.7533 1.9858 -1.3658 17 6 7.6266 4.0635 -1.8387 18 7 8.9210 4.2640 -1.7195 19 14 6.4995 5.4824 -2.2925 20 1 6.0307 6.1572 -1.0555 21 1 7.2416 6.4540 -3.1354 22 1 5.3303 4.9640 -3.0471 23 6 2.0554 -0.7499 -1.2348 24 1 1.8517 -1.8155 -1.1284 25 6 1.3601 -0.2190 -2.4901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.3547 -1.7977 2.9947 30 1 6.6880 -2.3299 2.4268 31 1 7.4796 -2.0455 0.1109 32 1 5.9583 -1.2117 -1.6185 33 1 3.4805 1.1242 -2.6307 34 1 3.2641 1.5042 -0.9053 35 1 5.6173 0.8562 -0.4675 36 1 5.8336 0.4762 -2.1929 37 1 5.3028 2.8274 -2.7765 38 1 5.0866 3.2067 -1.0509 39 1 9.2904 5.1486 -1.8684 40 1 1.5669 0.8457 -2.5972 41 1 1.7334 -0.7514 -3.3649 42 1 0.2846 -0.3733 -2.4025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161119820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:07 Heat of formation + Delta-G solvation = 14.830861 kcal Electronic energy + Delta-G solvation = -21661.729784 eV Core-core repulsion = 18731.969809 eV Total energy + Delta-G solvation = -2929.759975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -41.54974 -38.76459 -36.27935 -34.79147 -33.38329 -31.94095 -31.20747 -29.67518 -28.39100 -25.93147 -24.75144 -23.49250 -23.01662 -21.92696 -20.70642 -19.03649 -18.32157 -17.69970 -17.08326 -16.99829 -16.43377 -16.18775 -15.88698 -15.38274 -14.93936 -14.68164 -14.64732 -14.31366 -13.75077 -13.65009 -13.53561 -13.47003 -13.27413 -12.94019 -12.92041 -12.77325 -12.51883 -12.35148 -11.95842 -11.84675 -11.78735 -11.59543 -11.49410 -11.32587 -11.04446 -10.78197 -10.77372 -10.08981 -9.02979 -8.42713 -8.30087 -6.34088 0.21561 0.38241 0.53319 1.28469 1.33886 1.35494 1.47390 2.34724 2.49662 2.77425 3.05133 3.41315 3.75733 3.80377 3.94948 4.00555 4.11541 4.18362 4.24268 4.36121 4.42005 4.52130 4.55285 4.57549 4.67404 4.75433 4.81004 4.87308 4.90158 4.94779 4.99066 5.04973 5.18363 5.21541 5.31502 5.35050 5.44713 5.51351 5.58858 5.62995 5.77353 5.94646 6.28256 6.38867 6.73313 7.30119 8.86815 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.005474 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.957061 B = 5114.152464 C = 6182.152176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 H 0.087 0.913 4 S -0.147 6.147 5 C -0.133 4.133 6 C -0.102 4.102 7 C -0.117 4.117 8 C -0.122 4.122 9 C -0.107 4.107 10 C 0.102 3.898 11 N -0.512 5.512 12 C 0.068 3.932 13 C -0.097 4.097 14 C -0.007 4.007 15 C -0.529 4.529 16 H 0.030 0.970 17 C 0.004 3.996 18 N -0.951 5.951 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.242 1.242 23 C 0.095 3.905 24 H 0.092 0.908 25 C -0.141 4.141 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.138 0.862 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.026 0.974 38 H 0.011 0.989 39 H 0.266 0.734 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.645 -12.039 2.824 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.235 4.235 3 H 0.105 0.895 4 S 0.096 5.904 5 C -0.248 4.248 6 C -0.125 4.125 7 C -0.137 4.137 8 C -0.142 4.142 9 C -0.128 4.128 10 C 0.000 4.000 11 N -0.229 5.229 12 C -0.056 4.056 13 C -0.134 4.134 14 C -0.045 4.045 15 C -0.567 4.567 16 H 0.048 0.952 17 C -0.193 4.193 18 N -0.592 5.592 19 Si 0.772 3.228 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.165 1.165 23 C -0.014 4.014 24 H 0.110 0.890 25 C -0.200 4.200 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.136 -12.396 3.427 23.056 hybrid contribution 1.094 1.447 -0.414 1.861 sum -18.042 -10.949 3.013 21.318 Atomic orbital electron populations 1.21673 0.88465 1.04095 1.04100 1.24397 1.02533 1.01316 0.95263 0.89497 1.85433 1.04577 1.71480 1.28892 1.21876 0.98717 1.08859 0.95396 1.20939 0.93336 0.99876 0.98319 1.21323 0.95254 1.00151 0.96955 1.21303 1.00284 0.99123 0.93486 1.21451 0.92605 0.98206 1.00553 1.18364 0.93862 1.00192 0.87597 1.57475 1.07652 1.18726 1.39013 1.22271 0.96294 0.85107 1.01976 1.21696 0.94287 0.97004 1.00459 1.19466 0.94395 0.94099 0.96505 1.21424 0.93122 0.95332 1.46806 0.95162 1.26017 0.96503 1.01969 0.94770 1.70078 1.13677 1.23683 1.51764 0.85677 0.79660 0.78380 0.79074 1.19545 1.20826 1.16544 1.21970 0.84290 1.00252 0.94881 0.88977 1.21987 1.01295 1.01633 0.95049 0.90535 0.91653 0.88199 0.84467 0.82940 0.84329 0.85773 0.88452 0.94250 0.93798 0.92173 0.95615 0.97040 0.92535 0.91956 0.91208 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.58 71.98 0.62 -1.19 16 2 C -0.10 -2.29 2.80 30.84 0.09 -2.20 16 3 H 0.09 2.18 5.94 -2.39 -0.01 2.17 16 4 S -0.15 -3.84 21.55 -56.49 -1.22 -5.06 16 5 C -0.13 -4.06 6.06 22.64 0.14 -3.93 16 6 C -0.10 -2.83 9.68 22.42 0.22 -2.62 16 7 C -0.12 -3.08 10.06 22.23 0.22 -2.86 16 8 C -0.12 -3.56 10.02 22.18 0.22 -3.34 16 9 C -0.11 -3.49 6.92 22.55 0.16 -3.33 16 10 C 0.10 3.24 4.39 38.53 0.17 3.41 16 11 N -0.51 -14.73 4.24 -672.62 -2.85 -17.59 16 12 C 0.07 2.13 4.31 86.30 0.37 2.50 16 13 C -0.10 -3.88 3.66 30.59 0.11 -3.76 16 14 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 15 C -0.53 -30.98 9.66 25.60 0.25 -30.73 16 16 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 17 C 0.00 0.24 5.47 84.65 0.46 0.70 16 18 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 19 Si 0.95 44.42 27.47 68.60 1.88 46.31 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 22 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 23 C 0.10 2.12 2.36 45.40 0.11 2.22 16 24 H 0.09 2.10 8.06 -2.39 -0.02 2.09 16 25 C -0.14 -2.33 8.17 71.98 0.59 -1.74 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.06 6.47 -2.39 -0.02 1.04 16 29 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 30 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.12 4.17 6.37 -2.91 -0.02 4.15 16 33 H 0.10 2.76 6.82 -2.39 -0.02 2.74 16 34 H 0.04 1.24 5.85 -2.39 -0.01 1.23 16 35 H 0.04 1.91 5.96 -2.39 -0.01 1.89 16 36 H 0.06 2.45 6.47 -2.39 -0.02 2.44 16 37 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 38 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 39 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 40 H 0.06 1.08 6.52 -2.39 -0.02 1.06 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.06 6.41 -2.39 -0.02 1.05 16 Total: -1.00 -68.58 328.68 2.90 -65.68 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.95 Total: 17.82 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 3.84 Total: -47.07 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -2.55 Total: -77.67 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.22 Total: -5.06 kcal Total: -68.58 2.90 -65.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161119820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.508 kcal (2) G-P(sol) polarization free energy of solvation -68.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds