Wall clock time and date at job start Tue Mar 31 2020 06:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.96962 * 2 1 4 4 S 1.81921 * 110.06102 * 121.31838 * 2 1 3 5 5 C 1.76617 * 101.88539 * 162.82825 * 4 2 1 6 6 C 1.39084 * 118.30973 * 168.58521 * 5 4 2 7 7 C 1.38047 * 120.46882 * 178.23032 * 6 5 4 8 8 C 1.38274 * 119.63706 * 0.03557 * 7 6 5 9 9 C 1.37830 * 120.21569 * 0.47263 * 8 7 6 10 10 C 1.38935 * 121.43996 * 347.74882 * 5 4 2 11 11 N 1.39125 * 124.85612 * 2.39653 * 10 5 4 12 12 C 1.46899 * 110.99683 * 102.34566 * 11 10 5 13 13 C 1.52998 * 109.46965 * 58.76161 * 12 11 10 14 14 C 1.53004 * 109.47059 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47051 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00039 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00074 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99795 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47389 * 89.99387 * 19 17 15 21 21 H 1.48499 * 109.46717 * 210.00027 * 19 17 15 22 22 H 1.48507 * 109.46576 * 329.99479 * 19 17 15 23 23 C 1.45621 * 116.49957 * 334.01398 * 11 10 5 24 24 H 1.08996 * 109.53945 * 182.65832 * 23 11 10 25 25 C 1.53000 * 109.59789 * 302.85235 * 23 11 10 26 26 H 1.08995 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47268 * 299.99954 * 1 2 3 28 28 H 1.08999 * 109.46824 * 59.99873 * 1 2 3 29 29 H 1.08005 * 119.76487 * 358.26439 * 6 5 4 30 30 H 1.08004 * 120.18288 * 180.02562 * 7 6 5 31 31 H 1.08001 * 119.89561 * 180.47117 * 8 7 6 32 32 H 1.07994 * 119.58118 * 179.97438 * 9 8 7 33 33 H 1.09010 * 109.47224 * 178.75398 * 12 11 10 34 34 H 1.08996 * 109.47823 * 298.75456 * 12 11 10 35 35 H 1.09005 * 109.47200 * 299.99441 * 13 12 11 36 36 H 1.09000 * 109.47937 * 59.99573 * 13 12 11 37 37 H 1.09000 * 109.46915 * 299.99185 * 14 13 12 38 38 H 1.08997 * 109.47444 * 59.99927 * 14 13 12 39 39 H 0.97000 * 119.99993 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47493 * 179.64868 * 25 23 11 41 41 H 1.09003 * 109.47388 * 299.64764 * 25 23 11 42 42 H 1.08999 * 109.47150 * 59.64720 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9023 1.0245 0.0000 4 16 2.1541 -0.8882 1.4598 5 6 3.8299 -1.2073 1.0026 6 6 4.7040 -1.6692 1.9809 7 6 6.0142 -1.9676 1.6646 8 6 6.4581 -1.8045 0.3652 9 6 5.6003 -1.3373 -0.6073 10 6 4.2731 -1.0229 -0.3012 11 7 3.4920 -0.5380 -1.3454 12 6 3.7964 0.8728 -1.6193 13 6 5.2778 1.0152 -1.9742 14 6 5.5947 2.4845 -2.2602 15 6 7.0540 2.6248 -2.6092 16 1 7.6918 1.7533 -2.6250 17 6 7.5753 3.8660 -2.9072 18 7 6.7989 4.9273 -2.8874 19 14 9.3841 4.0399 -3.3405 20 1 9.5584 3.8893 -4.8075 21 1 9.8672 5.3795 -2.9195 22 1 10.1643 2.9892 -2.6388 23 6 2.0555 -0.7499 -1.2349 24 1 1.5612 -0.3706 -2.1293 25 6 1.7673 -2.2452 -1.0864 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.3551 -1.7958 2.9952 30 1 6.6889 -2.3263 2.4278 31 1 7.4802 -2.0440 0.1115 32 1 5.9579 -1.2135 -1.6187 33 1 3.1877 1.2204 -2.4542 34 1 3.5755 1.4706 -0.7351 35 1 5.8865 0.6677 -1.1394 36 1 5.4988 0.4175 -2.8585 37 1 4.9861 2.8316 -3.0952 38 1 5.3738 3.0826 -1.3761 39 1 7.1655 5.8004 -3.0975 40 1 0.6921 -2.4009 -0.9977 41 1 2.1401 -2.7759 -1.9625 42 1 2.2642 -2.6240 -0.1933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161119940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:15 Heat of formation + Delta-G solvation = 25.710951 kcal Electronic energy + Delta-G solvation = -21535.761762 eV Core-core repulsion = 18606.473583 eV Total energy + Delta-G solvation = -2929.288179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33799 -37.52830 -34.74241 -33.16044 -31.62220 -30.66742 -29.72391 -29.05403 -26.15144 -24.74388 -23.08382 -22.52020 -22.10318 -20.17260 -19.97479 -17.03284 -16.52999 -16.45785 -15.84644 -15.73787 -15.04542 -14.59293 -14.45012 -14.37796 -13.88853 -13.49628 -13.01855 -12.80926 -12.52182 -12.40435 -12.31557 -11.98418 -11.91413 -11.74580 -11.45975 -11.35000 -11.24632 -10.89530 -10.73424 -10.54468 -10.54015 -10.10105 -9.83071 -9.55530 -9.30598 -9.15874 -8.90968 -8.35264 -7.85624 -7.28944 -6.00771 -4.02860 1.33819 1.51353 1.57765 2.35112 3.31637 3.37861 3.41171 3.66034 3.88837 4.39306 4.45949 4.72220 4.83641 5.01125 5.07644 5.16053 5.31240 5.35358 5.40512 5.45669 5.49756 5.58663 5.64576 5.70315 5.75120 5.77823 5.82957 5.99066 6.06099 6.16449 6.20418 6.35795 6.42038 6.58963 6.64633 6.70689 6.93064 7.09342 7.15613 7.57525 7.64914 7.79038 7.98465 8.41493 9.03673 9.61223 11.10768 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.004638 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.603746 B = 6035.195352 C = 6906.366681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 H 0.100 0.900 4 S -0.130 6.130 5 C -0.120 4.120 6 C -0.093 4.093 7 C -0.122 4.122 8 C -0.112 4.112 9 C -0.094 4.094 10 C 0.124 3.876 11 N -0.511 5.511 12 C 0.063 3.937 13 C -0.115 4.115 14 C 0.024 3.976 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.093 3.907 24 H 0.102 0.898 25 C -0.154 4.154 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 -14.295 7.163 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.242 4.242 3 H 0.118 0.882 4 S 0.113 5.887 5 C -0.235 4.235 6 C -0.116 4.116 7 C -0.142 4.142 8 C -0.132 4.132 9 C -0.115 4.115 10 C 0.021 3.979 11 N -0.227 5.227 12 C -0.061 4.061 13 C -0.152 4.152 14 C -0.014 4.014 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.017 4.017 24 H 0.120 0.880 25 C -0.212 4.212 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.290 -14.562 7.732 19.983 hybrid contribution 1.475 1.100 -0.714 1.974 sum -9.815 -13.462 7.018 18.078 Atomic orbital electron populations 1.21589 0.91095 1.03153 1.02900 1.24363 1.00550 1.02509 0.96741 0.88192 1.85336 1.05308 1.71357 1.26728 1.21586 0.97662 1.08895 0.95326 1.20610 0.93045 1.00277 0.97660 1.20960 0.95018 1.01489 0.96758 1.21032 0.99714 0.99387 0.93096 1.21400 0.92039 0.97337 1.00680 1.18244 0.93548 0.99141 0.86931 1.57468 1.05936 1.20353 1.38911 1.22387 1.00502 0.83207 0.99964 1.22034 0.91406 1.01163 1.00635 1.19057 0.96617 0.89012 0.96691 1.21203 0.94689 0.93221 1.46432 0.92664 1.25016 0.97803 0.95997 0.95603 1.69962 1.35401 0.98807 1.49407 0.86605 0.85414 0.77393 0.78684 1.20648 1.21246 1.19839 1.21820 0.86581 0.96814 0.96452 0.87979 1.22104 1.01845 0.93782 1.03468 0.91268 0.91790 0.90710 0.86081 0.85835 0.85691 0.84574 0.90300 0.94579 0.92109 0.92399 0.96648 0.96851 0.93027 0.91646 0.91682 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.13 37.16 0.34 -0.84 16 2 C -0.11 -1.35 2.92 -26.35 -0.08 -1.43 16 3 H 0.10 1.38 6.28 -51.93 -0.33 1.05 16 4 S -0.13 -1.74 19.84 -107.50 -2.13 -3.87 16 5 C -0.12 -1.80 5.17 -39.01 -0.20 -2.00 16 6 C -0.09 -1.27 9.68 -39.34 -0.38 -1.65 16 7 C -0.12 -1.57 10.06 -39.64 -0.40 -1.97 16 8 C -0.11 -1.55 10.02 -39.72 -0.40 -1.94 16 9 C -0.09 -1.47 7.07 -39.15 -0.28 -1.75 16 10 C 0.12 1.96 4.27 -83.71 -0.36 1.60 16 11 N -0.51 -7.82 4.10 -163.96 -0.67 -8.49 16 12 C 0.06 1.10 4.50 -3.83 -0.02 1.08 16 13 C -0.11 -2.36 3.84 -26.73 -0.10 -2.46 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.09 1.17 2.38 -68.02 -0.16 1.01 16 24 H 0.10 1.18 7.99 -51.93 -0.41 0.76 16 25 C -0.15 -1.77 8.48 37.16 0.32 -1.45 16 26 H 0.07 0.58 6.77 -51.93 -0.35 0.23 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 31 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.14 2.19 6.46 -52.49 -0.34 1.86 16 33 H 0.08 1.31 7.98 -51.92 -0.41 0.89 16 34 H 0.04 0.66 6.68 -51.93 -0.35 0.31 16 35 H 0.06 1.27 5.39 -51.93 -0.28 0.99 16 36 H 0.06 1.18 7.73 -51.93 -0.40 0.78 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.06 0.62 6.79 -51.93 -0.35 0.27 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.94 5.29 -51.90 -0.27 0.67 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -30.39 333.45 -10.76 -41.15 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.42 Total: 0.50 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.27 Total: -24.72 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.06 Total: -34.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.13 Total: -3.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.39 -10.76 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161119940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.857 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds