Wall clock time and date at job start Tue Mar 31 2020 06:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.96962 * 2 1 4 4 S 1.81921 * 110.06102 * 121.31838 * 2 1 3 5 5 C 1.76617 * 101.88539 * 162.82825 * 4 2 1 6 6 C 1.39084 * 118.30973 * 168.58521 * 5 4 2 7 7 C 1.38047 * 120.46882 * 178.23032 * 6 5 4 8 8 C 1.38274 * 119.63706 * 0.03557 * 7 6 5 9 9 C 1.37830 * 120.21569 * 0.47263 * 8 7 6 10 10 C 1.38935 * 121.43996 * 347.74882 * 5 4 2 11 11 N 1.39125 * 124.85612 * 2.39653 * 10 5 4 12 12 C 1.46899 * 110.99683 * 102.34566 * 11 10 5 13 13 C 1.52998 * 109.46965 * 58.76161 * 12 11 10 14 14 C 1.53004 * 109.47059 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47051 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00039 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00074 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99795 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47389 * 89.99387 * 19 17 15 21 21 H 1.48499 * 109.46717 * 210.00027 * 19 17 15 22 22 H 1.48507 * 109.46576 * 329.99479 * 19 17 15 23 23 C 1.45621 * 116.49957 * 334.01398 * 11 10 5 24 24 H 1.08996 * 109.53945 * 182.65832 * 23 11 10 25 25 C 1.53000 * 109.59789 * 302.85235 * 23 11 10 26 26 H 1.08995 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47268 * 299.99954 * 1 2 3 28 28 H 1.08999 * 109.46824 * 59.99873 * 1 2 3 29 29 H 1.08005 * 119.76487 * 358.26439 * 6 5 4 30 30 H 1.08004 * 120.18288 * 180.02562 * 7 6 5 31 31 H 1.08001 * 119.89561 * 180.47117 * 8 7 6 32 32 H 1.07994 * 119.58118 * 179.97438 * 9 8 7 33 33 H 1.09010 * 109.47224 * 178.75398 * 12 11 10 34 34 H 1.08996 * 109.47823 * 298.75456 * 12 11 10 35 35 H 1.09005 * 109.47200 * 299.99441 * 13 12 11 36 36 H 1.09000 * 109.47937 * 59.99573 * 13 12 11 37 37 H 1.09000 * 109.46915 * 299.99185 * 14 13 12 38 38 H 1.08997 * 109.47444 * 59.99927 * 14 13 12 39 39 H 0.97000 * 119.99993 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.47493 * 179.64868 * 25 23 11 41 41 H 1.09003 * 109.47388 * 299.64764 * 25 23 11 42 42 H 1.08999 * 109.47150 * 59.64720 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9023 1.0245 0.0000 4 16 2.1541 -0.8882 1.4598 5 6 3.8299 -1.2073 1.0026 6 6 4.7040 -1.6692 1.9809 7 6 6.0142 -1.9676 1.6646 8 6 6.4581 -1.8045 0.3652 9 6 5.6003 -1.3373 -0.6073 10 6 4.2731 -1.0229 -0.3012 11 7 3.4920 -0.5380 -1.3454 12 6 3.7964 0.8728 -1.6193 13 6 5.2778 1.0152 -1.9742 14 6 5.5947 2.4845 -2.2602 15 6 7.0540 2.6248 -2.6092 16 1 7.6918 1.7533 -2.6250 17 6 7.5753 3.8660 -2.9072 18 7 6.7989 4.9273 -2.8874 19 14 9.3841 4.0399 -3.3405 20 1 9.5584 3.8893 -4.8075 21 1 9.8672 5.3795 -2.9195 22 1 10.1643 2.9892 -2.6388 23 6 2.0555 -0.7499 -1.2349 24 1 1.5612 -0.3706 -2.1293 25 6 1.7673 -2.2452 -1.0864 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.3551 -1.7958 2.9952 30 1 6.6889 -2.3263 2.4278 31 1 7.4802 -2.0440 0.1115 32 1 5.9579 -1.2135 -1.6187 33 1 3.1877 1.2204 -2.4542 34 1 3.5755 1.4706 -0.7351 35 1 5.8865 0.6677 -1.1394 36 1 5.4988 0.4175 -2.8585 37 1 4.9861 2.8316 -3.0952 38 1 5.3738 3.0826 -1.3761 39 1 7.1655 5.8004 -3.0975 40 1 0.6921 -2.4009 -0.9977 41 1 2.1401 -2.7759 -1.9625 42 1 2.2642 -2.6240 -0.1933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161119940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:14 Heat of formation + Delta-G solvation = 10.234617 kcal Electronic energy + Delta-G solvation = -21536.432866 eV Core-core repulsion = 18606.473583 eV Total energy + Delta-G solvation = -2929.959283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.47944 -38.59036 -36.34178 -34.79415 -33.17146 -31.89713 -30.72578 -30.34088 -27.90712 -25.69755 -24.77893 -23.63969 -23.29147 -21.78371 -21.11690 -18.56215 -18.06340 -17.61130 -17.16201 -16.73254 -16.50962 -16.28389 -15.88393 -15.41415 -14.99679 -14.63397 -14.39915 -14.24109 -13.96453 -13.48591 -13.42094 -13.32864 -13.23061 -12.90001 -12.81996 -12.70178 -12.55716 -12.37169 -12.21623 -12.09112 -11.78347 -11.59976 -11.41009 -11.17564 -11.10138 -10.62516 -10.56552 -10.10571 -9.02157 -8.35089 -8.21202 -6.31962 0.23632 0.40383 0.55179 1.30525 1.39351 1.40660 1.51705 2.39057 2.51866 2.79528 3.12407 3.43060 3.76793 3.81563 3.97188 4.01628 4.16637 4.22043 4.28981 4.37974 4.45989 4.54537 4.59989 4.62885 4.70480 4.73531 4.86824 4.88813 4.92789 4.96517 5.03684 5.14785 5.19019 5.24385 5.32296 5.36876 5.48688 5.58552 5.69818 5.79737 5.82402 5.95490 6.23990 6.42585 6.83926 7.37290 8.90877 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.004638 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.603746 B = 6035.195352 C = 6906.366681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 H 0.079 0.921 4 S -0.128 6.128 5 C -0.136 4.136 6 C -0.101 4.101 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.115 4.115 10 C 0.104 3.896 11 N -0.513 5.513 12 C 0.077 3.923 13 C -0.096 4.096 14 C 0.029 3.971 15 C -0.539 4.539 16 H 0.060 0.940 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.089 3.911 24 H 0.115 0.885 25 C -0.146 4.146 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.144 0.856 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.058 0.942 37 H -0.006 1.006 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 -15.606 7.628 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.239 4.239 3 H 0.098 0.902 4 S 0.115 5.885 5 C -0.251 4.251 6 C -0.124 4.124 7 C -0.136 4.136 8 C -0.138 4.138 9 C -0.136 4.136 10 C 0.002 3.998 11 N -0.229 5.229 12 C -0.048 4.048 13 C -0.134 4.134 14 C -0.008 4.008 15 C -0.577 4.577 16 H 0.078 0.922 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.187 1.187 23 C -0.020 4.020 24 H 0.133 0.867 25 C -0.203 4.203 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.156 0.844 30 H 0.173 0.827 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.104 0.896 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.013 0.987 38 H 0.003 0.997 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.189 -15.899 8.206 21.102 hybrid contribution 1.419 1.493 -0.812 2.214 sum -9.770 -14.405 7.394 18.911 Atomic orbital electron populations 1.21613 0.88549 1.04234 1.03825 1.24400 1.02517 1.00984 0.95953 0.90241 1.85237 1.04421 1.71268 1.27614 1.21849 0.98882 1.08960 0.95365 1.20959 0.93400 0.99801 0.98234 1.21337 0.95165 1.00132 0.97003 1.21327 1.00379 0.98793 0.93277 1.21484 0.92682 0.98728 1.00740 1.18359 0.93804 1.00119 0.87508 1.57408 1.07651 1.18415 1.39415 1.22074 0.98226 0.84913 0.99560 1.21746 0.93827 0.97321 1.00486 1.18936 0.95535 0.91930 0.94429 1.21631 0.95923 0.93656 1.46481 0.92211 1.25961 1.02854 0.95581 0.95306 1.70094 1.37679 0.99405 1.50254 0.85470 0.79343 0.77608 0.78803 1.19623 1.20801 1.18709 1.22002 0.84941 0.97871 0.97191 0.86693 1.22039 1.03202 0.92519 1.02584 0.90045 0.91511 0.89144 0.84402 0.82674 0.83828 0.85797 0.89635 0.95944 0.92438 0.92324 0.98741 0.99728 0.92791 0.89225 0.91898 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 9.13 71.98 0.66 -1.35 16 2 C -0.11 -2.53 2.92 30.84 0.09 -2.44 16 3 H 0.08 2.20 6.28 -2.39 -0.01 2.19 16 4 S -0.13 -3.30 19.84 -56.49 -1.12 -4.43 16 5 C -0.14 -4.00 5.17 22.64 0.12 -3.88 16 6 C -0.10 -2.63 9.68 22.43 0.22 -2.41 16 7 C -0.12 -2.77 10.06 22.23 0.22 -2.55 16 8 C -0.12 -3.13 10.02 22.18 0.22 -2.91 16 9 C -0.12 -3.64 7.07 22.55 0.16 -3.48 16 10 C 0.10 3.30 4.27 38.53 0.16 3.46 16 11 N -0.51 -15.70 4.10 -672.66 -2.76 -18.46 16 12 C 0.08 2.73 4.50 86.30 0.39 3.12 16 13 C -0.10 -4.07 3.84 30.59 0.12 -3.95 16 14 C 0.03 1.57 4.97 29.85 0.15 1.72 16 15 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 16 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 17 C 0.00 0.04 5.46 84.66 0.46 0.50 16 18 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 19 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 23 C 0.09 2.14 2.38 45.41 0.11 2.25 16 24 H 0.12 2.46 7.99 -2.39 -0.02 2.44 16 25 C -0.15 -3.11 8.48 71.98 0.61 -2.50 16 26 H 0.08 1.14 6.77 -2.39 -0.02 1.13 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 32 H 0.12 4.10 6.46 -2.91 -0.02 4.08 16 33 H 0.09 2.88 7.98 -2.38 -0.02 2.86 16 34 H 0.02 0.85 6.68 -2.39 -0.02 0.83 16 35 H 0.06 2.47 5.39 -2.38 -0.01 2.46 16 36 H 0.06 2.45 7.73 -2.39 -0.02 2.43 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.09 1.45 6.79 -2.39 -0.02 1.44 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.42 5.29 -2.41 -0.01 1.41 16 Total: -1.00 -66.20 333.45 3.35 -62.85 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.00 Total: 15.70 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 3.92 Total: -45.18 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -2.48 Total: -75.51 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.12 Total: -4.43 kcal Total: -66.20 3.35 -62.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161119940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.087 kcal (2) G-P(sol) polarization free energy of solvation -66.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds