Wall clock time and date at job start Tue Mar 31 2020 08:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47244 * 270.00123 * 3 2 1 5 5 H 1.48502 * 109.46790 * 29.99898 * 3 2 1 6 6 H 1.48497 * 109.47445 * 150.00019 * 3 2 1 7 7 C 1.37880 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00041 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46939 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46690 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46795 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99738 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99986 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99901 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47057 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.46972 * 180.02562 * 16 15 13 18 18 C 1.42893 * 113.99793 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99993 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97930 * 19 18 17 25 25 H 0.96998 * 120.00195 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46666 * 60.00101 * 9 7 2 27 27 H 1.09001 * 109.46900 * 299.99888 * 9 7 2 28 28 H 1.09001 * 109.46637 * 60.00151 * 10 9 7 29 29 H 1.08993 * 109.47500 * 300.00024 * 10 9 7 30 30 H 1.09000 * 109.46711 * 60.00358 * 11 10 9 31 31 H 1.09001 * 109.47104 * 299.99992 * 11 10 9 32 32 H 0.97001 * 120.00056 * 0.02562 * 12 11 10 33 33 H 1.09001 * 109.46585 * 60.00131 * 15 13 12 34 34 H 1.09005 * 109.47002 * 300.00377 * 15 13 12 35 35 H 1.09005 * 109.47112 * 60.00104 * 16 15 13 36 36 H 1.08993 * 109.47202 * 300.00207 * 16 15 13 37 37 H 1.09005 * 109.47744 * 60.00256 * 18 17 16 38 38 H 1.09000 * 109.47353 * 299.99456 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5516 -2.6365 0.0022 12 7 6.0399 -4.0178 0.0027 13 6 7.3650 -4.2640 0.0023 14 8 8.1530 -3.3422 0.0019 15 6 7.8674 -5.6849 0.0022 16 6 9.3973 -5.6848 0.0023 17 8 9.8737 -7.0321 0.0016 18 6 11.2981 -7.1449 0.0022 19 6 11.6868 -8.6010 0.0020 20 6 11.8655 -9.2685 -1.1952 21 6 12.2225 -10.6040 -1.1954 22 6 12.4013 -11.2717 0.0017 23 6 12.2174 -10.6057 1.1989 24 6 11.8649 -9.2690 1.1991 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6805 -0.8889 28 1 3.6585 -3.1509 -0.8875 29 1 3.6579 -3.1499 0.8924 30 1 5.9149 -2.1220 0.8918 31 1 5.9149 -2.1234 -0.8882 32 1 5.4096 -4.7551 0.0026 33 1 7.5037 -6.1987 -0.8877 34 1 7.5043 -6.1986 0.8924 35 1 9.7606 -5.1710 0.8923 36 1 9.7607 -5.1709 -0.8876 37 1 11.7006 -6.6620 0.8927 38 1 11.7013 -6.6608 -0.8873 39 1 11.7263 -8.7466 -2.1305 40 1 12.3618 -11.1256 -2.1307 41 1 12.6807 -12.3150 0.0015 42 1 12.3528 -11.1285 2.1342 43 1 11.7260 -8.7473 2.1344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171499473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:41 Heat of formation + Delta-G solvation = -80.112500 kcal Electronic energy + Delta-G solvation = -21089.205480 eV Core-core repulsion = 17712.575581 eV Total energy + Delta-G solvation = -3376.629899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.86898 -39.58892 -37.86949 -35.59280 -33.36461 -32.89475 -31.69268 -31.28304 -30.91492 -27.37325 -26.29181 -24.03735 -22.96564 -22.40498 -21.70518 -20.76103 -19.81361 -17.59769 -17.18076 -16.83794 -16.65917 -15.99867 -15.89116 -15.69017 -15.46640 -15.02460 -14.37201 -14.21841 -14.12993 -13.78212 -13.42865 -13.03628 -13.03099 -12.83376 -12.69234 -12.05862 -11.95188 -11.65730 -11.62140 -11.36000 -11.29925 -11.10607 -10.91079 -10.24879 -10.00286 -9.91821 -9.80495 -9.60769 -9.29834 -9.24681 -9.22316 -8.91309 -8.57005 -6.07726 -4.06596 0.87320 1.02450 2.64988 2.92771 3.30016 3.37578 3.39631 3.41784 3.86205 4.42913 4.43019 4.45162 4.62097 4.63342 4.74348 4.80070 4.89134 5.01026 5.04375 5.16253 5.26290 5.26648 5.30179 5.55259 5.55745 5.58045 5.58156 5.64136 5.65813 5.98639 6.05819 6.12083 6.21038 6.31328 6.41914 6.59328 6.66120 6.76605 6.84942 7.20618 7.34095 7.56901 7.74797 8.25178 8.48760 8.96020 9.54433 11.05477 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.050038 B = 0.001757 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.444107 B =15929.816227 C =16158.260831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.724 5.724 13 C 0.513 3.487 14 O -0.549 6.549 15 C -0.140 4.140 16 C 0.078 3.922 17 O -0.385 6.385 18 C 0.104 3.896 19 C -0.090 4.090 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.099 4.099 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.402 0.598 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.867 -21.495 0.032 33.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.375 5.375 13 C 0.299 3.701 14 O -0.427 6.427 15 C -0.180 4.180 16 C 0.001 3.999 17 O -0.305 6.305 18 C 0.028 3.972 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.117 4.117 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 26.140 -20.844 0.036 33.433 hybrid contribution 0.069 0.747 -0.023 0.751 sum 26.209 -20.096 0.013 33.026 Atomic orbital electron populations 1.69911 1.06312 1.26968 1.50946 1.25029 0.94749 0.99234 0.94447 0.86774 0.80393 0.83530 0.78584 1.20250 1.21341 1.18921 1.21101 0.89308 0.94530 1.51164 0.90995 1.19507 0.97291 0.91471 0.96662 1.21712 0.90583 1.01077 1.01800 1.21672 0.96197 0.81102 1.01962 1.46156 1.06627 1.10161 1.74546 1.20360 0.82730 0.90774 0.76277 1.90706 1.55360 1.46578 1.50055 1.21471 0.95925 0.94875 1.05710 1.22137 0.93114 0.82800 1.01869 1.87882 1.20317 1.26675 1.95587 1.21287 0.81948 0.92756 1.01246 1.19636 1.00609 0.95096 0.93622 1.21103 0.98319 0.94636 0.97623 1.21169 1.00162 0.94619 0.98264 1.21218 0.99592 0.99942 0.92643 1.21169 1.00167 0.94610 0.98263 1.21101 0.98337 0.94619 0.97624 0.92684 0.96310 0.96736 0.92070 0.92036 0.91737 0.91751 0.76433 0.88036 0.88040 0.92287 0.92295 0.92260 0.92254 0.85859 0.85876 0.86008 0.85874 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 11 C 0.11 1.84 5.67 -4.04 -0.02 1.82 16 12 N -0.72 -9.50 5.56 -60.29 -0.33 -9.84 16 13 C 0.51 6.89 7.83 -10.98 -0.09 6.81 16 14 O -0.55 -9.49 15.98 5.56 0.09 -9.40 16 15 C -0.14 -1.37 6.07 -27.88 -0.17 -1.54 16 16 C 0.08 0.80 5.23 37.16 0.19 0.99 16 17 O -0.38 -4.00 10.33 -35.23 -0.36 -4.36 16 18 C 0.10 0.88 6.06 36.01 0.22 1.09 16 19 C -0.09 -0.77 5.51 -104.62 -0.58 -1.34 16 20 C -0.10 -0.78 9.70 -39.58 -0.38 -1.16 16 21 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 22 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 23 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 24 C -0.10 -0.78 9.70 -39.58 -0.38 -1.16 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.40 4.16 8.47 -40.82 -0.35 3.82 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.63 8.10 -51.93 -0.42 0.20 16 36 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 40 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -33.63 365.45 -9.12 -42.74 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.03 Total: -0.78 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -3.09 Total: -13.99 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.44 Total: -36.73 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.27 Total: -13.77 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.63 -9.12 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.371 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds