Wall clock time and date at job start Tue Mar 31 2020 08:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47244 * 270.00123 * 3 2 1 5 5 H 1.48502 * 109.46790 * 29.99898 * 3 2 1 6 6 H 1.48497 * 109.47445 * 150.00019 * 3 2 1 7 7 C 1.37880 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00041 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46939 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46690 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46795 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99738 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99986 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99901 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47057 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.46972 * 180.02562 * 16 15 13 18 18 C 1.42893 * 113.99793 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99993 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97930 * 19 18 17 25 25 H 0.96998 * 120.00195 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46666 * 60.00101 * 9 7 2 27 27 H 1.09001 * 109.46900 * 299.99888 * 9 7 2 28 28 H 1.09001 * 109.46637 * 60.00151 * 10 9 7 29 29 H 1.08993 * 109.47500 * 300.00024 * 10 9 7 30 30 H 1.09000 * 109.46711 * 60.00358 * 11 10 9 31 31 H 1.09001 * 109.47104 * 299.99992 * 11 10 9 32 32 H 0.97001 * 120.00056 * 0.02562 * 12 11 10 33 33 H 1.09001 * 109.46585 * 60.00131 * 15 13 12 34 34 H 1.09005 * 109.47002 * 300.00377 * 15 13 12 35 35 H 1.09005 * 109.47112 * 60.00104 * 16 15 13 36 36 H 1.08993 * 109.47202 * 300.00207 * 16 15 13 37 37 H 1.09005 * 109.47744 * 60.00256 * 18 17 16 38 38 H 1.09000 * 109.47353 * 299.99456 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5516 -2.6365 0.0022 12 7 6.0399 -4.0178 0.0027 13 6 7.3650 -4.2640 0.0023 14 8 8.1530 -3.3422 0.0019 15 6 7.8674 -5.6849 0.0022 16 6 9.3973 -5.6848 0.0023 17 8 9.8737 -7.0321 0.0016 18 6 11.2981 -7.1449 0.0022 19 6 11.6868 -8.6010 0.0020 20 6 11.8655 -9.2685 -1.1952 21 6 12.2225 -10.6040 -1.1954 22 6 12.4013 -11.2717 0.0017 23 6 12.2174 -10.6057 1.1989 24 6 11.8649 -9.2690 1.1991 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6805 -0.8889 28 1 3.6585 -3.1509 -0.8875 29 1 3.6579 -3.1499 0.8924 30 1 5.9149 -2.1220 0.8918 31 1 5.9149 -2.1234 -0.8882 32 1 5.4096 -4.7551 0.0026 33 1 7.5037 -6.1987 -0.8877 34 1 7.5043 -6.1986 0.8924 35 1 9.7606 -5.1710 0.8923 36 1 9.7607 -5.1709 -0.8876 37 1 11.7006 -6.6620 0.8927 38 1 11.7013 -6.6608 -0.8873 39 1 11.7263 -8.7466 -2.1305 40 1 12.3618 -11.1256 -2.1307 41 1 12.6807 -12.3150 0.0015 42 1 12.3528 -11.1285 2.1342 43 1 11.7260 -8.7473 2.1344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171499473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:40 Heat of formation + Delta-G solvation = -101.323308 kcal Electronic energy + Delta-G solvation = -21090.125250 eV Core-core repulsion = 17712.575581 eV Total energy + Delta-G solvation = -3377.549669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85764 -40.25064 -38.60544 -37.01329 -35.15138 -33.72436 -33.19813 -31.87366 -31.79247 -28.99381 -26.99532 -25.29467 -23.75417 -23.48058 -22.27397 -22.23527 -21.08633 -18.98476 -18.41011 -17.76855 -17.45241 -16.99221 -16.84408 -16.67845 -16.33310 -16.08161 -15.95940 -15.29308 -14.97596 -14.77107 -14.52285 -14.29662 -14.00125 -13.80798 -13.62770 -13.48497 -13.39309 -12.74112 -12.70285 -12.39302 -12.35676 -11.92564 -11.89133 -11.86529 -11.78432 -11.59787 -11.33506 -10.94440 -10.76476 -10.66234 -10.09585 -9.82567 -9.77051 -8.29658 -6.33658 0.32606 0.49730 1.36635 1.38345 1.50044 1.59587 2.02049 2.36068 2.69550 3.06117 3.14847 3.73907 3.84730 3.90262 4.04900 4.08885 4.14770 4.20675 4.25637 4.32362 4.33283 4.42140 4.50112 4.53831 4.64610 4.75605 4.80753 4.83338 4.89654 4.93232 5.03740 5.07317 5.15511 5.38969 5.50269 5.54802 5.55722 5.61272 5.64923 5.66210 6.08156 6.13276 6.27113 6.54799 6.74619 7.21865 7.31285 8.86706 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.050038 B = 0.001757 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.444107 B =15929.816227 C =16158.260831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.532 4.532 8 H 0.037 0.963 9 C -0.013 4.013 10 C -0.101 4.101 11 C 0.126 3.874 12 N -0.716 5.716 13 C 0.514 3.486 14 O -0.589 6.589 15 C -0.129 4.129 16 C 0.080 3.920 17 O -0.394 6.394 18 C 0.100 3.900 19 C -0.108 4.108 20 C -0.113 4.113 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.131 4.131 24 C -0.113 4.113 25 H 0.266 0.734 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.417 0.583 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.639 -22.433 0.018 35.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.139 4.139 11 C 0.002 3.998 12 N -0.368 5.368 13 C 0.301 3.699 14 O -0.470 6.470 15 C -0.168 4.168 16 C 0.003 3.997 17 O -0.314 6.314 18 C 0.025 3.975 19 C -0.108 4.108 20 C -0.131 4.131 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.149 4.149 24 C -0.131 4.131 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.254 0.746 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.148 0.852 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 27.913 -21.826 0.021 35.433 hybrid contribution -0.504 0.921 -0.019 1.050 sum 27.409 -20.905 0.002 34.471 Atomic orbital electron populations 1.70058 1.08219 1.28127 1.52655 1.25988 0.95590 1.03437 0.94203 0.85694 0.79510 0.78507 0.79172 1.19261 1.21018 1.17141 1.21482 0.91955 0.93271 1.50305 0.94420 1.19477 0.94045 0.94772 0.96802 1.21488 0.92101 0.98077 1.02240 1.21306 0.94327 0.82809 1.01376 1.45989 1.07129 1.09415 1.74247 1.20932 0.82158 0.91842 0.74928 1.90693 1.56303 1.48170 1.51882 1.21417 0.95473 0.92350 1.07585 1.22062 0.93505 0.82839 1.01291 1.87855 1.21507 1.26447 1.95639 1.21407 0.81039 0.93185 1.01913 1.19769 1.01546 0.95225 0.94239 1.21311 0.98708 0.95319 0.97784 1.21468 0.99668 0.94427 0.99370 1.21559 0.98897 1.01060 0.92405 1.21468 0.99674 0.94419 0.99369 1.21310 0.98725 0.95302 0.97785 0.92516 0.96106 0.96202 0.91652 0.91664 0.92445 0.92380 0.74618 0.86050 0.86057 0.92948 0.92956 0.91602 0.91596 0.85215 0.84042 0.83846 0.84040 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 2 C 0.00 0.27 5.47 84.66 0.46 0.74 16 3 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.53 -30.14 9.66 25.60 0.25 -29.89 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.58 5.27 30.60 0.16 -3.42 16 11 C 0.13 3.87 5.67 86.38 0.49 4.36 16 12 N -0.72 -17.31 5.56 -463.05 -2.57 -19.88 16 13 C 0.51 12.92 7.83 87.66 0.69 13.60 16 14 O -0.59 -19.87 15.98 -3.02 -0.05 -19.91 16 15 C -0.13 -2.22 6.07 29.85 0.18 -2.04 16 16 C 0.08 1.55 5.23 71.98 0.38 1.93 16 17 O -0.39 -7.73 10.33 -148.98 -1.54 -9.27 16 18 C 0.10 1.63 6.06 71.24 0.43 2.06 16 19 C -0.11 -1.77 5.51 -19.86 -0.11 -1.88 16 20 C -0.11 -1.69 9.70 22.27 0.22 -1.48 16 21 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 22 C -0.12 -1.40 10.05 22.27 0.22 -1.18 16 23 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 24 C -0.11 -1.69 9.70 22.27 0.22 -1.47 16 25 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 26 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 27 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.42 7.56 8.47 -92.71 -0.79 6.78 16 33 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 36 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 37 H 0.07 0.95 8.08 -2.38 -0.02 0.93 16 38 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 39 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 42 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -72.65 365.45 2.32 -70.33 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.14 Total: 13.52 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.15 Total: -21.97 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.27 Total: -78.85 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.59 Total: -29.18 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -72.65 2.32 -70.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.993 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds