Wall clock time and date at job start Tue Mar 31 2020 08:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00146 * 2 1 4 4 H 1.48497 * 109.47607 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47484 * 300.00514 * 3 2 1 6 6 H 1.48503 * 109.47278 * 60.00299 * 3 2 1 7 7 C 1.37887 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99258 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46837 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47262 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00544 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99834 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00433 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47151 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47181 * 180.02562 * 16 15 13 18 18 O 1.42902 * 109.47386 * 180.02562 * 17 16 15 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 0.96999 * 119.99987 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46392 * 60.00646 * 9 7 2 27 27 H 1.08998 * 109.47247 * 300.00681 * 9 7 2 28 28 H 1.08999 * 109.47090 * 60.00138 * 10 9 7 29 29 H 1.09001 * 109.46820 * 299.99827 * 10 9 7 30 30 H 1.09008 * 109.47220 * 60.00336 * 11 10 9 31 31 H 1.09001 * 109.47670 * 300.00153 * 11 10 9 32 32 H 0.96998 * 119.99602 * 359.97438 * 12 11 10 33 33 H 1.08999 * 109.46805 * 59.99987 * 15 13 12 34 34 H 1.08993 * 109.46945 * 300.00151 * 15 13 12 35 35 H 1.08999 * 109.47370 * 60.00219 * 16 15 13 36 36 H 1.09006 * 109.47017 * 300.00060 * 16 15 13 37 37 H 1.08999 * 109.46920 * 59.99785 * 17 16 15 38 38 H 1.08998 * 109.47220 * 300.00155 * 17 16 15 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4993 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1007 -0.0018 13 6 1.9831 -7.3713 -0.0019 14 8 0.7907 -7.5930 -0.0020 15 6 2.9624 -8.5168 -0.0020 16 6 2.1974 -9.8418 -0.0027 17 6 3.1916 -11.0047 -0.0021 18 8 2.4771 -12.2423 -0.0035 19 6 3.2173 -13.3820 -0.0026 20 6 2.5887 -14.6188 -0.0033 21 6 3.3433 -15.7759 -0.0029 22 6 4.7240 -15.7021 -0.0014 23 6 5.3529 -14.4708 -0.0011 24 6 4.6027 -13.3108 -0.0015 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5572 0.8896 28 1 2.8720 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8906 30 1 0.8540 -5.0446 -0.8915 31 1 0.8533 -5.0452 0.8885 32 1 3.3859 -5.9234 -0.0021 33 1 3.5890 -8.4591 0.8881 34 1 3.5890 -8.4590 -0.8919 35 1 1.5711 -9.8992 -0.8930 36 1 1.5703 -9.8998 0.8870 37 1 3.8176 -10.9471 0.8883 38 1 3.8189 -10.9469 -0.8916 39 1 1.5102 -14.6769 0.0004 40 1 2.8544 -16.7389 -0.0030 41 1 5.3122 -16.6079 -0.0007 42 1 6.4315 -14.4158 -0.0003 43 1 5.0944 -12.3492 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171507341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:54 Heat of formation + Delta-G solvation = -80.202657 kcal Electronic energy + Delta-G solvation = -21050.548620 eV Core-core repulsion = 17673.914811 eV Total energy + Delta-G solvation = -3376.633809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.46088 -39.58361 -37.82359 -35.53791 -34.02685 -33.32905 -31.42433 -31.23583 -30.19474 -27.97432 -26.32107 -23.75606 -22.95926 -22.46371 -21.49606 -20.74928 -19.87886 -18.58419 -17.07911 -16.75059 -16.45363 -16.33232 -15.92292 -15.60298 -15.37810 -14.78526 -14.54765 -14.46270 -13.95232 -13.77227 -13.55437 -13.20705 -12.72321 -12.53275 -12.30447 -11.94236 -11.81819 -11.80970 -11.79631 -11.56073 -11.10413 -10.93883 -10.92251 -10.76391 -10.59235 -9.92859 -9.89865 -9.39944 -9.39295 -9.12512 -8.81452 -8.56649 -8.39600 -6.03944 -4.07162 0.95177 1.07722 2.73062 2.73388 3.28359 3.35844 3.38850 3.41776 3.45033 4.38982 4.42526 4.48876 4.55944 4.57092 4.70286 4.74031 4.91028 5.00335 5.01310 5.07027 5.15665 5.25964 5.31936 5.34916 5.61931 5.70790 5.73702 5.78063 5.90530 6.00320 6.02618 6.13301 6.15160 6.40330 6.45539 6.56780 6.79897 6.97555 7.08434 7.61364 7.66653 7.73507 7.94709 8.33605 8.37418 8.99735 9.57207 11.07350 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.060907 B = 0.001666 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.608119 B =16801.182431 C =17219.135393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.727 5.727 13 C 0.507 3.493 14 O -0.543 6.543 15 C -0.138 4.138 16 C -0.104 4.104 17 C 0.060 3.940 18 O -0.313 6.313 19 C 0.133 3.867 20 C -0.155 4.155 21 C -0.081 4.081 22 C -0.163 4.163 23 C -0.081 4.081 24 C -0.211 4.211 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.399 0.601 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.768 -29.720 0.002 31.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.378 5.378 13 C 0.292 3.708 14 O -0.421 6.421 15 C -0.178 4.178 16 C -0.142 4.142 17 C -0.015 4.015 18 O -0.226 6.226 19 C 0.087 3.913 20 C -0.173 4.173 21 C -0.099 4.099 22 C -0.181 4.181 23 C -0.099 4.099 24 C -0.230 4.230 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.232 0.768 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.529 -29.703 0.001 31.514 hybrid contribution 1.186 1.220 0.001 1.701 sum 11.714 -28.483 0.002 30.797 Atomic orbital electron populations 1.69976 1.06065 1.26599 1.50572 1.25037 0.94860 0.99332 0.95255 0.86521 0.80020 0.83732 0.77615 1.19773 1.20994 1.20989 1.21242 0.93025 0.90936 1.50910 0.92590 1.19042 0.93877 0.90894 0.97689 1.21885 0.99759 0.93367 1.00851 1.21655 0.91913 0.85151 1.02013 1.46226 1.10825 1.05990 1.74719 1.20478 0.89636 0.84121 0.76516 1.90722 1.16966 1.84816 1.49548 1.21524 0.98577 0.93037 1.04659 1.21229 0.97570 0.89859 1.05547 1.22869 0.95275 0.81905 1.01461 1.86087 1.35655 1.12622 1.88239 1.19073 0.90034 0.86665 0.95500 1.20506 1.00744 0.89683 1.06398 1.20989 0.93861 0.97660 0.97418 1.21076 0.94752 0.97757 1.04531 1.20971 0.99775 0.91985 0.97162 1.21304 0.92833 0.99880 1.08949 0.92965 0.96251 0.96257 0.92727 0.92736 0.91771 0.91763 0.76784 0.88657 0.88663 0.89855 0.89862 0.91830 0.91839 0.85134 0.85389 0.85971 0.85818 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.12 -2.32 5.27 -26.74 -0.14 -2.46 16 11 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 12 N -0.73 -9.77 5.56 -60.29 -0.33 -10.10 16 13 C 0.51 6.91 7.83 -10.99 -0.09 6.82 16 14 O -0.54 -9.86 15.98 5.56 0.09 -9.77 16 15 C -0.14 -1.17 5.70 -27.88 -0.16 -1.33 16 16 C -0.10 -0.99 4.87 -26.73 -0.13 -1.12 16 17 C 0.06 0.48 4.74 37.16 0.18 0.65 16 18 O -0.31 -3.27 10.14 -19.42 -0.20 -3.47 16 19 C 0.13 1.28 6.69 -39.22 -0.26 1.02 16 20 C -0.15 -1.35 9.99 -39.43 -0.39 -1.74 16 21 C -0.08 -0.58 10.04 -39.61 -0.40 -0.97 16 22 C -0.16 -1.10 10.04 -39.56 -0.40 -1.50 16 23 C -0.08 -0.57 10.04 -39.61 -0.40 -0.97 16 24 C -0.21 -1.70 9.04 -39.44 -0.36 -2.06 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 38 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.81 6.30 -52.48 -0.33 0.48 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -33.72 365.00 -9.27 -43.00 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.93 Total: -0.94 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.12 Total: -14.58 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.40 Total: -36.08 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.11 Total: -13.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.72 -9.27 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171507341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.206 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds