Wall clock time and date at job start Tue Mar 31 2020 08:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00146 * 2 1 4 4 H 1.48497 * 109.47607 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47484 * 300.00514 * 3 2 1 6 6 H 1.48503 * 109.47278 * 60.00299 * 3 2 1 7 7 C 1.37887 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99258 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46837 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47262 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00544 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99834 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00433 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47151 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47181 * 180.02562 * 16 15 13 18 18 O 1.42902 * 109.47386 * 180.02562 * 17 16 15 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 0.96999 * 119.99987 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46392 * 60.00646 * 9 7 2 27 27 H 1.08998 * 109.47247 * 300.00681 * 9 7 2 28 28 H 1.08999 * 109.47090 * 60.00138 * 10 9 7 29 29 H 1.09001 * 109.46820 * 299.99827 * 10 9 7 30 30 H 1.09008 * 109.47220 * 60.00336 * 11 10 9 31 31 H 1.09001 * 109.47670 * 300.00153 * 11 10 9 32 32 H 0.96998 * 119.99602 * 359.97438 * 12 11 10 33 33 H 1.08999 * 109.46805 * 59.99987 * 15 13 12 34 34 H 1.08993 * 109.46945 * 300.00151 * 15 13 12 35 35 H 1.08999 * 109.47370 * 60.00219 * 16 15 13 36 36 H 1.09006 * 109.47017 * 300.00060 * 16 15 13 37 37 H 1.08999 * 109.46920 * 59.99785 * 17 16 15 38 38 H 1.08998 * 109.47220 * 300.00155 * 17 16 15 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4993 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1007 -0.0018 13 6 1.9831 -7.3713 -0.0019 14 8 0.7907 -7.5930 -0.0020 15 6 2.9624 -8.5168 -0.0020 16 6 2.1974 -9.8418 -0.0027 17 6 3.1916 -11.0047 -0.0021 18 8 2.4771 -12.2423 -0.0035 19 6 3.2173 -13.3820 -0.0026 20 6 2.5887 -14.6188 -0.0033 21 6 3.3433 -15.7759 -0.0029 22 6 4.7240 -15.7021 -0.0014 23 6 5.3529 -14.4708 -0.0011 24 6 4.6027 -13.3108 -0.0015 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5572 0.8896 28 1 2.8720 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8906 30 1 0.8540 -5.0446 -0.8915 31 1 0.8533 -5.0452 0.8885 32 1 3.3859 -5.9234 -0.0021 33 1 3.5890 -8.4591 0.8881 34 1 3.5890 -8.4590 -0.8919 35 1 1.5711 -9.8992 -0.8930 36 1 1.5703 -9.8998 0.8870 37 1 3.8176 -10.9471 0.8883 38 1 3.8189 -10.9469 -0.8916 39 1 1.5102 -14.6769 0.0004 40 1 2.8544 -16.7389 -0.0030 41 1 5.3122 -16.6079 -0.0007 42 1 6.4315 -14.4158 -0.0003 43 1 5.0944 -12.3492 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171507341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:53 Heat of formation + Delta-G solvation = -101.315283 kcal Electronic energy + Delta-G solvation = -21051.464132 eV Core-core repulsion = 17673.914811 eV Total energy + Delta-G solvation = -3377.549321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09729 -40.69041 -38.41928 -37.02050 -35.19005 -34.84077 -33.01824 -31.91361 -30.80602 -29.19280 -27.69517 -25.10114 -23.92119 -23.18084 -22.31437 -22.19621 -21.08768 -19.21592 -18.55181 -18.00543 -17.45855 -16.98210 -16.72270 -16.70621 -16.56640 -16.38412 -15.77511 -15.29461 -14.90140 -14.60285 -14.34587 -14.28512 -13.99915 -13.78768 -13.60767 -13.24879 -13.16130 -12.77789 -12.55378 -12.45929 -12.42957 -12.33557 -12.28918 -11.68220 -11.66236 -11.60021 -11.56991 -11.23268 -10.84350 -10.56868 -10.08514 -9.93183 -9.15210 -8.20166 -6.31861 0.41425 0.51290 1.41809 1.41882 1.55164 1.66050 2.00511 2.40040 2.49026 2.87104 3.13778 3.67573 3.90810 3.91663 3.97806 4.07121 4.15379 4.20508 4.28189 4.31446 4.39945 4.45163 4.52661 4.54798 4.59434 4.66361 4.78947 4.93582 5.01830 5.04885 5.11021 5.16692 5.21210 5.39332 5.45724 5.50504 5.53369 5.62749 5.69846 5.83580 5.89898 6.21365 6.49453 6.61339 6.86206 7.30251 7.38071 8.92147 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.060907 B = 0.001666 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.608119 B =16801.182431 C =17219.135393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.715 5.715 13 C 0.502 3.498 14 O -0.596 6.596 15 C -0.122 4.122 16 C -0.101 4.101 17 C 0.062 3.938 18 O -0.339 6.339 19 C 0.108 3.892 20 C -0.177 4.177 21 C -0.086 4.086 22 C -0.167 4.167 23 C -0.086 4.086 24 C -0.218 4.218 25 H 0.263 0.737 26 H -0.009 1.009 27 H -0.009 1.009 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.418 0.582 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.541 -30.475 0.003 34.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.017 4.017 10 C -0.139 4.139 11 C 0.003 3.997 12 N -0.367 5.367 13 C 0.290 3.710 14 O -0.477 6.477 15 C -0.162 4.162 16 C -0.139 4.139 17 C -0.012 4.012 18 O -0.254 6.254 19 C 0.063 3.937 20 C -0.196 4.196 21 C -0.104 4.104 22 C -0.185 4.185 23 C -0.104 4.104 24 C -0.236 4.236 25 H 0.072 0.928 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.256 0.744 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.360 -30.474 0.003 33.688 hybrid contribution -0.027 1.379 0.000 1.379 sum 14.333 -29.096 0.003 32.434 Atomic orbital electron populations 1.70124 1.07997 1.27721 1.51756 1.26044 0.95742 1.03626 0.94772 0.85346 0.79238 0.78552 0.77579 1.18067 1.20642 1.20631 1.21726 0.93810 0.91967 1.50351 0.91388 1.18972 0.94541 0.93185 0.94990 1.21587 0.98363 0.91690 1.02231 1.21203 0.92146 0.85919 1.00383 1.45996 1.11219 1.05070 1.74439 1.21444 0.89833 0.84955 0.74769 1.90709 1.19701 1.85522 1.51797 1.21522 0.97315 0.89457 1.07889 1.21147 0.97824 0.91590 1.03384 1.22913 0.94666 0.80391 1.03265 1.86040 1.37016 1.13590 1.88746 1.19334 0.90936 0.86504 0.96925 1.20728 1.01023 0.90407 1.07453 1.21288 0.94347 0.97973 0.96744 1.21446 0.94780 0.98784 1.03459 1.21342 1.01066 0.91721 0.96308 1.21550 0.92204 1.01191 1.08676 0.92847 0.99073 0.99076 0.91208 0.91218 0.93583 0.93573 0.74430 0.85225 0.85234 0.92133 0.92140 0.89914 0.89925 0.85500 0.83382 0.83674 0.83442 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.21 13.29 21.45 0.28 -56.93 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 3 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 11 C 0.13 4.45 5.67 86.38 0.49 4.94 16 12 N -0.71 -18.08 5.56 -463.06 -2.57 -20.65 16 13 C 0.50 13.18 7.83 87.66 0.69 13.87 16 14 O -0.60 -22.29 15.98 -3.04 -0.05 -22.34 16 15 C -0.12 -1.74 5.70 29.85 0.17 -1.57 16 16 C -0.10 -1.87 4.87 30.59 0.15 -1.72 16 17 C 0.06 0.88 4.74 71.98 0.34 1.22 16 18 O -0.34 -7.12 10.14 -92.40 -0.94 -8.05 16 19 C 0.11 2.03 6.69 22.51 0.15 2.18 16 20 C -0.18 -3.11 9.99 22.37 0.22 -2.89 16 21 C -0.09 -1.12 10.04 22.25 0.22 -0.90 16 22 C -0.17 -1.89 10.04 22.28 0.22 -1.67 16 23 C -0.09 -1.01 10.04 22.25 0.22 -0.78 16 24 C -0.22 -3.10 9.04 22.36 0.20 -2.90 16 25 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 26 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.42 7.26 8.47 -92.71 -0.79 6.48 16 33 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 36 H 0.06 1.37 8.10 -2.38 -0.02 1.35 16 37 H 0.08 0.85 7.66 -2.39 -0.02 0.83 16 38 H 0.08 0.85 7.66 -2.39 -0.02 0.83 16 39 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 42 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.14 1.43 6.30 -2.91 -0.02 1.41 16 Total: -1.00 -76.62 365.00 3.04 -73.58 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.20 Total: 10.98 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 4.09 Total: -22.18 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -2.29 Total: -77.58 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.99 Total: -30.39 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -76.62 3.04 -73.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171507341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.735 kcal (2) G-P(sol) polarization free energy of solvation -76.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds