Wall clock time and date at job start Tue Mar 31 2020 07:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76200 * 102.99862 * 2 1 4 4 C 1.38978 * 120.07891 * 180.02562 * 3 2 1 5 5 C 1.38084 * 119.91590 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.08265 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.92024 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.46742 * 96.58210 * 7 6 5 9 9 C 1.36934 * 120.00153 * 81.31323 * 8 7 6 10 10 H 1.08004 * 120.00280 * 213.74898 * 9 8 7 11 11 C 1.38820 * 119.99999 * 33.75259 * 9 8 7 12 12 N 1.31618 * 119.99471 * 314.89392 * 11 9 8 13 13 Si 1.86796 * 120.00054 * 134.89680 * 11 9 8 14 14 H 1.48505 * 109.47339 * 59.99734 * 13 11 9 15 15 H 1.48497 * 109.47159 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46993 * 299.99762 * 13 11 9 17 17 C 1.46502 * 119.99791 * 261.30674 * 8 7 6 18 18 C 1.54970 * 110.92160 * 126.54551 * 17 8 7 19 19 C 1.54263 * 104.16160 * 156.29729 * 18 17 8 20 20 C 1.53879 * 106.63925 * 336.44376 * 19 18 17 21 21 C 1.54265 * 106.59971 * 359.97438 * 20 19 18 22 22 C 1.38308 * 120.16107 * 0.27413 * 6 5 4 23 23 C 1.38079 * 120.07785 * 359.45192 * 22 6 5 24 24 H 1.08998 * 109.47260 * 299.99921 * 1 2 3 25 25 H 1.08998 * 109.46997 * 60.00033 * 1 2 3 26 26 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.04432 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.95427 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.46966 * 336.58540 * 7 6 5 30 30 H 1.09000 * 109.46917 * 216.58259 * 7 6 5 31 31 H 0.96998 * 119.99665 * 180.02562 * 12 11 9 32 32 H 1.08996 * 110.67212 * 3.24260 * 17 8 7 33 33 H 1.08999 * 110.47797 * 37.64114 * 18 17 8 34 34 H 1.09001 * 110.52839 * 274.97627 * 18 17 8 35 35 H 1.08997 * 110.03162 * 217.13838 * 19 18 17 36 36 H 1.08997 * 110.03435 * 95.75013 * 19 18 17 37 37 H 1.09001 * 110.02779 * 119.25601 * 20 19 18 38 38 H 1.09001 * 110.03397 * 240.64360 * 20 19 18 39 39 H 1.08994 * 110.49320 * 142.28831 * 21 20 19 40 40 H 1.09009 * 110.48507 * 264.79881 * 21 20 19 41 41 H 1.07999 * 119.95931 * 179.72573 * 22 6 5 42 42 H 1.07998 * 120.03669 * 180.27359 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5388 2.1250 -0.0005 5 6 3.8456 3.4714 0.0000 6 6 2.8328 4.4131 0.0005 7 6 3.1717 5.8816 0.0017 8 7 3.1275 6.3939 -1.3701 9 6 1.9275 6.7323 -1.9362 10 1 1.7686 6.5840 -2.9942 11 6 0.9152 7.2660 -1.1504 12 7 0.6321 6.7243 0.0152 13 14 -0.0452 8.7528 -1.7474 14 1 -0.7209 8.4240 -3.0283 15 1 -1.0634 9.1245 -0.7324 16 1 0.8849 9.8915 -1.9564 17 6 4.3672 6.5445 -2.1360 18 6 4.2680 5.8131 -3.4987 19 6 5.3012 6.5333 -4.3896 20 6 5.4988 7.9363 -3.7893 21 6 4.5783 8.0209 -2.5543 22 6 1.5096 4.0106 0.0063 23 6 1.1952 2.6661 0.0000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.3302 1.3902 -0.0005 28 1 4.8778 3.7893 0.0000 29 1 4.1722 6.0231 0.4103 30 1 2.4493 6.4207 0.6145 31 1 -0.0754 7.0969 0.5642 32 1 5.2199 6.1794 -1.5636 33 1 3.2663 5.9175 -3.9154 34 1 4.5282 4.7605 -3.3874 35 1 4.9238 6.6132 -5.4091 36 1 6.2449 5.9879 -4.3827 37 1 6.5382 8.0714 -3.4902 38 1 5.2182 8.6971 -4.5178 39 1 5.0642 8.5783 -1.7537 40 1 3.6276 8.4845 -2.8181 41 1 0.7213 4.7488 0.0111 42 1 0.1618 2.3525 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172572250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:57 Heat of formation + Delta-G solvation = 41.638129 kcal Electronic energy + Delta-G solvation = -21515.195988 eV Core-core repulsion = 18586.598463 eV Total energy + Delta-G solvation = -2928.597525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -38.49143 -37.50790 -34.58253 -31.63347 -30.58053 -30.23140 -28.59819 -27.94843 -26.73558 -25.63803 -22.75207 -21.73501 -20.38261 -19.61989 -19.39506 -17.13048 -16.43028 -15.64108 -15.09184 -14.90137 -14.34838 -14.14372 -13.93673 -13.64006 -13.44520 -13.41176 -12.79999 -12.65567 -12.58179 -12.21940 -12.00425 -11.68947 -11.37284 -11.28640 -10.71990 -10.69347 -10.55130 -10.46028 -10.44918 -10.29647 -10.05823 -9.90573 -9.80240 -9.66241 -9.51309 -8.85871 -8.10922 -8.05630 -6.92493 -6.77175 -6.21221 -3.22723 1.90586 2.03356 2.27173 2.77840 3.33889 3.44692 3.51720 4.38693 4.60258 4.90570 5.17286 5.20479 5.29896 5.35204 5.39073 5.54509 5.62104 5.75822 5.77571 6.08228 6.09593 6.12997 6.19387 6.21276 6.33594 6.40131 6.43592 6.52116 6.53250 6.58303 6.68100 6.73117 6.95691 6.99482 7.04672 7.12240 7.19872 7.36168 7.63532 7.81424 7.84022 8.04152 8.38963 9.10230 9.72898 10.32365 10.84552 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.005543 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.147457 B = 5050.042333 C = 6339.585853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.158 6.158 3 C -0.103 4.103 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.063 4.063 7 C 0.164 3.836 8 N -0.581 5.581 9 C -0.272 4.272 10 H 0.076 0.924 11 C 0.050 3.950 12 N -0.853 5.853 13 Si 0.843 3.157 14 H -0.283 1.283 15 H -0.293 1.293 16 H -0.282 1.282 17 C 0.183 3.817 18 C -0.138 4.138 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.070 4.070 23 C -0.148 4.148 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.024 0.976 30 H 0.115 0.885 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.177 0.823 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.924 -5.967 -0.435 7.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.081 5.919 3 C -0.215 4.215 4 C -0.139 4.139 5 C -0.137 4.137 6 C -0.068 4.068 7 C 0.040 3.960 8 N -0.300 5.300 9 C -0.398 4.398 10 H 0.093 0.907 11 C -0.151 4.151 12 N -0.493 5.493 13 Si 0.669 3.331 14 H -0.209 1.209 15 H -0.219 1.219 16 H -0.209 1.209 17 C 0.075 3.925 18 C -0.177 4.177 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.173 4.173 22 C -0.090 4.090 23 C -0.171 4.171 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.042 0.958 30 H 0.132 0.868 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.193 0.807 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.435 -6.981 -0.276 8.275 hybrid contribution -1.366 1.667 -0.518 2.217 sum 3.069 -5.314 -0.794 6.188 Atomic orbital electron populations 1.23533 0.95116 1.06069 1.05646 1.85014 1.06291 1.06429 1.94152 1.21381 0.96916 0.94392 1.08842 1.20444 0.93564 0.95856 1.04074 1.20995 0.98823 0.92211 1.01665 1.21046 0.92739 0.98407 0.94587 1.20953 0.98653 0.88271 0.88166 1.44055 1.01728 1.72490 1.11681 1.18775 0.92008 1.35324 0.93732 0.90667 1.25244 0.97118 0.97955 0.94741 1.69806 1.29440 1.35371 1.14690 0.87224 0.78935 0.88175 0.78735 1.20927 1.21891 1.20919 1.21238 0.88041 0.92466 0.90776 1.22808 0.99105 0.98228 0.97579 1.22047 0.98876 0.96175 0.98802 1.22068 0.99119 0.96693 0.98134 1.22757 0.99409 0.99570 0.95580 1.22259 0.99421 0.94727 0.92555 1.21238 0.96885 0.94185 1.04788 0.90011 0.89975 0.88232 0.87293 0.87290 0.95780 0.86793 0.92772 0.92628 0.90940 0.93196 0.92956 0.93002 0.93022 0.92911 0.93226 0.90462 0.80677 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.15 101.05 0.92 -0.71 16 2 S -0.16 -2.44 22.56 -107.50 -2.43 -4.86 16 3 C -0.10 -1.91 6.11 -39.03 -0.24 -2.15 16 4 C -0.12 -2.13 9.79 -39.36 -0.39 -2.52 16 5 C -0.12 -2.23 9.66 -39.62 -0.38 -2.61 16 6 C -0.06 -1.34 5.39 -104.57 -0.56 -1.91 16 7 C 0.16 3.61 5.41 -5.19 -0.03 3.58 16 8 N -0.58 -13.02 2.59 -164.71 -0.43 -13.44 16 9 C -0.27 -6.67 7.80 -15.06 -0.12 -6.79 16 10 H 0.08 1.92 6.54 -52.48 -0.34 1.58 16 11 C 0.05 1.23 5.19 -17.43 -0.09 1.14 16 12 N -0.85 -20.94 7.67 55.49 0.43 -20.51 16 13 Si 0.84 19.47 29.69 -169.99 -5.05 14.42 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 17 C 0.18 3.56 3.42 -65.89 -0.23 3.33 16 18 C -0.14 -2.53 6.36 -25.03 -0.16 -2.69 16 19 C -0.12 -1.85 6.80 -25.61 -0.17 -2.02 16 20 C -0.12 -1.86 6.80 -25.61 -0.17 -2.03 16 21 C -0.13 -2.43 6.39 -25.07 -0.16 -2.59 16 22 C -0.07 -1.52 9.43 -39.61 -0.37 -1.89 16 23 C -0.15 -2.88 9.36 -39.37 -0.37 -3.25 16 24 H 0.08 0.97 7.75 -51.92 -0.40 0.56 16 25 H 0.08 1.01 7.75 -51.92 -0.40 0.60 16 26 H 0.10 0.96 8.14 -51.92 -0.42 0.53 16 27 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 29 H 0.02 0.48 7.70 -51.93 -0.40 0.08 16 30 H 0.11 2.76 5.27 -51.93 -0.27 2.49 16 31 H 0.26 6.28 8.31 -40.82 -0.34 5.94 16 32 H 0.06 1.04 7.79 -51.93 -0.40 0.63 16 33 H 0.07 1.48 6.28 -51.93 -0.33 1.15 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.59 7.31 -51.92 -0.38 1.21 16 41 H 0.18 4.17 4.91 -52.49 -0.26 3.91 16 42 H 0.11 1.88 5.88 -52.49 -0.31 1.57 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -24.77 339.50 -11.31 -36.08 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.44 Total: 6.30 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.52 Total: -23.10 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.00 Total: -33.96 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.05 Total: 14.42 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.43 Total: -4.86 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -24.77 -11.31 -36.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172572250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.718 kcal (2) G-P(sol) polarization free energy of solvation -24.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds