Wall clock time and date at job start Tue Mar 31 2020 07:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76200 * 102.99862 * 2 1 4 4 C 1.38978 * 120.07891 * 180.02562 * 3 2 1 5 5 C 1.38084 * 119.91590 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.08265 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.92024 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.46742 * 96.58210 * 7 6 5 9 9 C 1.36934 * 120.00153 * 81.31323 * 8 7 6 10 10 H 1.08004 * 120.00280 * 213.74898 * 9 8 7 11 11 C 1.38820 * 119.99999 * 33.75259 * 9 8 7 12 12 N 1.31618 * 119.99471 * 314.89392 * 11 9 8 13 13 Si 1.86796 * 120.00054 * 134.89680 * 11 9 8 14 14 H 1.48505 * 109.47339 * 59.99734 * 13 11 9 15 15 H 1.48497 * 109.47159 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46993 * 299.99762 * 13 11 9 17 17 C 1.46502 * 119.99791 * 261.30674 * 8 7 6 18 18 C 1.54970 * 110.92160 * 126.54551 * 17 8 7 19 19 C 1.54263 * 104.16160 * 156.29729 * 18 17 8 20 20 C 1.53879 * 106.63925 * 336.44376 * 19 18 17 21 21 C 1.54265 * 106.59971 * 359.97438 * 20 19 18 22 22 C 1.38308 * 120.16107 * 0.27413 * 6 5 4 23 23 C 1.38079 * 120.07785 * 359.45192 * 22 6 5 24 24 H 1.08998 * 109.47260 * 299.99921 * 1 2 3 25 25 H 1.08998 * 109.46997 * 60.00033 * 1 2 3 26 26 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.04432 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.95427 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.46966 * 336.58540 * 7 6 5 30 30 H 1.09000 * 109.46917 * 216.58259 * 7 6 5 31 31 H 0.96998 * 119.99665 * 180.02562 * 12 11 9 32 32 H 1.08996 * 110.67212 * 3.24260 * 17 8 7 33 33 H 1.08999 * 110.47797 * 37.64114 * 18 17 8 34 34 H 1.09001 * 110.52839 * 274.97627 * 18 17 8 35 35 H 1.08997 * 110.03162 * 217.13838 * 19 18 17 36 36 H 1.08997 * 110.03435 * 95.75013 * 19 18 17 37 37 H 1.09001 * 110.02779 * 119.25601 * 20 19 18 38 38 H 1.09001 * 110.03397 * 240.64360 * 20 19 18 39 39 H 1.08994 * 110.49320 * 142.28831 * 21 20 19 40 40 H 1.09009 * 110.48507 * 264.79881 * 21 20 19 41 41 H 1.07999 * 119.95931 * 179.72573 * 22 6 5 42 42 H 1.07998 * 120.03669 * 180.27359 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5388 2.1250 -0.0005 5 6 3.8456 3.4714 0.0000 6 6 2.8328 4.4131 0.0005 7 6 3.1717 5.8816 0.0017 8 7 3.1275 6.3939 -1.3701 9 6 1.9275 6.7323 -1.9362 10 1 1.7686 6.5840 -2.9942 11 6 0.9152 7.2660 -1.1504 12 7 0.6321 6.7243 0.0152 13 14 -0.0452 8.7528 -1.7474 14 1 -0.7209 8.4240 -3.0283 15 1 -1.0634 9.1245 -0.7324 16 1 0.8849 9.8915 -1.9564 17 6 4.3672 6.5445 -2.1360 18 6 4.2680 5.8131 -3.4987 19 6 5.3012 6.5333 -4.3896 20 6 5.4988 7.9363 -3.7893 21 6 4.5783 8.0209 -2.5543 22 6 1.5096 4.0106 0.0063 23 6 1.1952 2.6661 0.0000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.3302 1.3902 -0.0005 28 1 4.8778 3.7893 0.0000 29 1 4.1722 6.0231 0.4103 30 1 2.4493 6.4207 0.6145 31 1 -0.0754 7.0969 0.5642 32 1 5.2199 6.1794 -1.5636 33 1 3.2663 5.9175 -3.9154 34 1 4.5282 4.7605 -3.3874 35 1 4.9238 6.6132 -5.4091 36 1 6.2449 5.9879 -4.3827 37 1 6.5382 8.0714 -3.4902 38 1 5.2182 8.6971 -4.5178 39 1 5.0642 8.5783 -1.7537 40 1 3.6276 8.4845 -2.8181 41 1 0.7213 4.7488 0.0111 42 1 0.1618 2.3525 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172572250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:53 Heat of formation + Delta-G solvation = 33.424263 kcal Electronic energy + Delta-G solvation = -21515.552168 eV Core-core repulsion = 18586.598463 eV Total energy + Delta-G solvation = -2928.953705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.03523 -38.97552 -36.21552 -33.39755 -32.09990 -31.72230 -29.67583 -29.34999 -28.22521 -27.39981 -24.40077 -23.24122 -21.95119 -21.09557 -20.84128 -18.61876 -18.07796 -17.25295 -16.49603 -16.39808 -15.98623 -15.70530 -15.38083 -15.11020 -14.73646 -14.62841 -14.34032 -14.18807 -14.05800 -13.65146 -13.43245 -13.24578 -12.98628 -12.77900 -12.55037 -12.29995 -12.06064 -11.93521 -11.84374 -11.77506 -11.73195 -11.48949 -11.20971 -11.09772 -11.02380 -10.34903 -9.90522 -9.63693 -8.61352 -8.17746 -8.07339 -5.10177 0.51769 0.71305 0.74122 1.43809 1.53916 1.55539 1.59678 2.51964 2.97820 3.04850 3.79088 4.02807 4.03270 4.09207 4.20311 4.24892 4.29098 4.34785 4.54409 4.64650 4.67042 4.77155 4.80658 4.84890 4.92615 4.94213 5.00025 5.03025 5.14722 5.20207 5.25658 5.31199 5.42066 5.53546 5.56554 5.62425 5.68899 5.71565 5.89354 5.98584 6.22112 6.30750 6.60241 7.24769 7.94525 8.48749 8.94866 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.005543 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.147457 B = 5050.042333 C = 6339.585853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.151 6.151 3 C -0.110 4.110 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.081 4.081 7 C 0.168 3.832 8 N -0.591 5.591 9 C -0.271 4.271 10 H 0.059 0.941 11 C 0.019 3.981 12 N -0.858 5.858 13 Si 0.885 3.115 14 H -0.288 1.288 15 H -0.296 1.296 16 H -0.290 1.290 17 C 0.174 3.826 18 C -0.133 4.133 19 C -0.113 4.113 20 C -0.114 4.114 21 C -0.132 4.132 22 C -0.095 4.095 23 C -0.154 4.154 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.258 0.742 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.152 0.848 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 -7.410 -0.912 9.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.089 5.911 3 C -0.222 4.222 4 C -0.141 4.141 5 C -0.136 4.136 6 C -0.086 4.086 7 C 0.043 3.957 8 N -0.310 5.310 9 C -0.399 4.399 10 H 0.076 0.924 11 C -0.181 4.181 12 N -0.499 5.499 13 Si 0.713 3.287 14 H -0.215 1.215 15 H -0.222 1.222 16 H -0.218 1.218 17 C 0.067 3.933 18 C -0.173 4.173 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.171 4.171 22 C -0.115 4.115 23 C -0.177 4.177 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.169 0.831 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.875 -8.428 -0.759 10.302 hybrid contribution -1.846 1.994 -0.351 2.740 sum 4.029 -6.434 -1.110 7.672 Atomic orbital electron populations 1.23678 0.92441 1.08156 1.05827 1.84969 1.09230 1.03239 1.93690 1.21695 0.96836 0.96435 1.07234 1.20764 0.94297 0.95996 1.03078 1.21157 0.99186 0.92351 1.00910 1.20970 0.93177 0.98261 0.96167 1.20741 0.98475 0.88812 0.87680 1.44168 1.01980 1.72962 1.11932 1.18667 0.92963 1.35336 0.92915 0.92385 1.25556 0.98125 0.99065 0.95348 1.69953 1.29581 1.35317 1.15004 0.86570 0.77818 0.86435 0.77871 1.21475 1.22220 1.21767 1.21466 0.87180 0.93523 0.91111 1.22693 0.98614 0.98391 0.97567 1.22014 0.98781 0.95937 0.98397 1.22032 0.99623 0.96877 0.96688 1.22672 0.98763 0.98368 0.97306 1.22112 0.99252 0.95501 0.94614 1.21344 0.98094 0.93540 1.04716 0.89605 0.90045 0.85165 0.84967 0.85408 0.94426 0.89458 0.93121 0.91389 0.93872 0.93477 0.92100 0.90732 0.90595 0.92051 0.92813 0.93571 0.83104 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.15 113.37 1.04 -1.82 16 2 S -0.15 -4.28 22.56 -56.49 -1.27 -5.56 16 3 C -0.11 -3.90 6.11 22.62 0.14 -3.76 16 4 C -0.12 -4.13 9.79 22.41 0.22 -3.91 16 5 C -0.12 -4.31 9.66 22.25 0.21 -4.09 16 6 C -0.08 -3.48 5.39 -19.83 -0.11 -3.59 16 7 C 0.17 7.51 5.41 85.64 0.46 7.97 16 8 N -0.59 -27.01 2.59 -675.01 -1.75 -28.76 16 9 C -0.27 -13.78 7.80 84.04 0.66 -13.12 16 10 H 0.06 3.12 6.54 -2.91 -0.02 3.10 16 11 C 0.02 0.95 5.19 84.86 0.44 1.39 16 12 N -0.86 -43.76 7.67 21.65 0.17 -43.59 16 13 Si 0.89 41.37 29.69 68.60 2.04 43.41 16 14 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 15 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 17 C 0.17 6.70 3.42 46.31 0.16 6.86 16 18 C -0.13 -4.82 6.36 31.70 0.20 -4.61 16 19 C -0.11 -3.19 6.80 31.32 0.21 -2.97 16 20 C -0.11 -3.19 6.80 31.32 0.21 -2.97 16 21 C -0.13 -4.71 6.39 31.67 0.20 -4.50 16 22 C -0.09 -4.22 9.43 22.25 0.21 -4.01 16 23 C -0.15 -5.95 9.36 22.41 0.21 -5.74 16 24 H 0.08 1.82 7.75 -2.39 -0.02 1.80 16 25 H 0.08 1.81 7.75 -2.39 -0.02 1.79 16 26 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.04 1.52 7.70 -2.39 -0.02 1.51 16 30 H 0.09 4.39 5.27 -2.39 -0.01 4.38 16 31 H 0.26 12.88 8.31 -92.71 -0.77 12.11 16 32 H 0.07 2.43 7.79 -2.39 -0.02 2.41 16 33 H 0.04 1.80 6.28 -2.39 -0.01 1.78 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.92 7.31 -2.38 -0.02 1.91 16 41 H 0.15 7.51 4.91 -2.91 -0.01 7.49 16 42 H 0.12 4.20 5.88 -2.91 -0.02 4.18 16 Total: -1.00 -54.41 339.50 4.65 -49.76 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 1.00 Total: 23.63 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 4.47 Total: -38.90 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.58 Total: -72.35 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.04 Total: 43.41 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -1.27 Total: -5.56 kcal Total: -54.41 4.65 -49.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172572250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.187 kcal (2) G-P(sol) polarization free energy of solvation -54.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds