Wall clock time and date at job start Tue Mar 31 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.27035 * 2 1 4 4 C 1.50620 * 109.24698 * 240.50499 * 2 1 3 5 5 C 1.38732 * 118.42666 * 42.36376 * 4 2 1 6 6 C 1.38021 * 120.37770 * 179.73174 * 5 4 2 7 7 C 1.38266 * 119.86806 * 0.04204 * 6 5 4 8 8 C 1.38025 * 119.82591 * 0.06808 * 7 6 5 9 9 C 1.37834 * 121.84673 * 222.24857 * 4 2 1 10 10 C 1.50719 * 121.66488 * 0.42762 * 9 4 2 11 11 C 1.52894 * 109.95556 * 343.10075 * 10 9 4 12 12 N 1.46639 * 109.26910 * 119.51050 * 2 1 3 13 13 C 1.46900 * 111.00032 * 49.32151 * 12 2 1 14 14 C 1.52994 * 109.47320 * 187.54663 * 13 12 2 15 15 C 1.53004 * 109.47483 * 179.97438 * 14 13 12 16 16 S 1.81000 * 109.47429 * 179.97438 * 15 14 13 17 17 C 1.76194 * 100.00064 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00183 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00186 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99742 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99934 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47297 * 60.00527 * 21 19 17 23 23 H 1.48502 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47587 * 300.00080 * 21 19 17 25 25 H 1.08994 * 109.47613 * 293.10602 * 1 2 3 26 26 H 1.09008 * 109.46949 * 53.10852 * 1 2 3 27 27 H 1.09002 * 109.47163 * 173.10539 * 1 2 3 28 28 H 1.07997 * 119.80921 * 359.73641 * 5 4 2 29 29 H 1.07994 * 120.06237 * 180.32287 * 6 5 4 30 30 H 1.07997 * 120.08286 * 180.08667 * 7 6 5 31 31 H 1.08005 * 119.82392 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.38661 * 103.24843 * 10 9 4 33 33 H 1.09005 * 109.38734 * 223.04636 * 10 9 4 34 34 H 1.09001 * 109.63015 * 170.10330 * 11 10 9 35 35 H 1.09001 * 109.63115 * 290.49766 * 11 10 9 36 36 H 1.09006 * 109.46746 * 307.54608 * 13 12 2 37 37 H 1.08997 * 109.46998 * 67.54086 * 13 12 2 38 38 H 1.09006 * 109.47167 * 299.99688 * 14 13 12 39 39 H 1.08997 * 109.47555 * 59.99765 * 14 13 12 40 40 H 1.08998 * 109.47111 * 300.00189 * 15 14 13 41 41 H 1.09004 * 109.46762 * 59.99888 * 15 14 13 42 42 H 0.97000 * 120.00143 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8896 1.0289 0.0000 4 6 2.0264 -0.7001 -1.2377 5 6 1.3930 -0.4378 -2.4438 6 6 1.8185 -1.0529 -3.6038 7 6 2.8814 -1.9364 -3.5649 8 6 3.5112 -2.2001 -2.3653 9 6 3.0844 -1.5827 -1.1991 10 6 3.7995 -1.9048 0.0880 11 6 3.4748 -0.8479 1.1440 12 7 2.0138 -0.6819 1.2047 13 6 1.3437 -1.9771 1.3816 14 6 1.7313 -2.5709 2.7372 15 6 1.0329 -3.9197 2.9218 16 16 1.4920 -4.6225 4.5253 17 6 0.5745 -6.1258 4.4745 18 1 -0.0333 -6.3587 3.6125 19 6 0.6334 -7.0114 5.5417 20 7 1.3745 -6.7278 6.5919 21 14 -0.3399 -8.6048 5.4880 22 1 0.1012 -9.4154 4.3246 23 1 -0.1084 -9.3686 6.7403 24 1 -1.7867 -8.2970 5.3569 25 1 -0.3634 0.4033 0.9451 26 1 -0.3633 0.6170 -0.8220 27 1 -0.3633 -1.0202 -0.1234 28 1 0.5624 0.2516 -2.4752 29 1 1.3251 -0.8410 -4.5408 30 1 3.2181 -2.4185 -4.4707 31 1 4.3412 -2.8906 -2.3348 32 1 3.4788 -2.8835 0.4449 33 1 4.8749 -1.9189 -0.0893 34 1 3.8470 -1.1741 2.1151 35 1 3.9428 0.0980 0.8713 36 1 0.2636 -1.8357 1.3422 37 1 1.6504 -2.6564 0.5862 38 1 2.8114 -2.7123 2.7766 39 1 1.4247 -1.8916 3.5326 40 1 -0.0471 -3.7779 2.8826 41 1 1.3392 -4.5992 2.1265 42 1 1.4154 -7.3465 7.3379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173890051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:30 Heat of formation + Delta-G solvation = 15.077083 kcal Electronic energy + Delta-G solvation = -20776.815566 eV Core-core repulsion = 17847.066268 eV Total energy + Delta-G solvation = -2929.749298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84391 -37.69592 -33.97720 -33.39639 -32.40215 -30.83336 -29.93773 -27.56014 -26.29751 -25.43361 -23.52864 -22.97981 -21.43877 -21.11493 -18.87886 -17.44588 -16.90205 -16.13412 -15.71500 -15.67389 -14.78572 -14.56335 -14.47952 -14.20387 -13.96805 -13.83838 -13.25717 -13.00801 -12.73971 -12.56609 -12.16926 -12.02392 -11.83855 -11.72262 -11.55847 -11.43548 -11.10997 -11.04377 -10.99143 -10.75512 -10.69179 -10.57600 -10.13046 -9.50260 -9.02747 -8.92098 -8.71757 -8.30305 -8.26485 -6.49486 -6.20226 -3.90070 1.19483 1.22282 3.23375 3.24764 3.29233 3.56278 3.58809 3.95340 4.25447 4.55331 4.56985 4.73442 4.82495 4.89749 5.03933 5.12801 5.15622 5.19682 5.28935 5.32468 5.40154 5.46404 5.49751 5.53081 5.67015 5.75641 5.81571 5.85288 5.86365 5.90628 5.97907 6.03344 6.06760 6.19765 6.29540 6.35585 6.40290 6.49011 6.64466 6.80843 6.85849 7.06362 7.13314 7.62675 8.38941 9.25937 10.87928 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.003260 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.063925 B = 8586.388810 C = 8877.753862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.118 3.882 3 H 0.092 0.908 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.122 4.122 8 C -0.120 4.120 9 C -0.071 4.071 10 C -0.123 4.123 11 C 0.051 3.949 12 N -0.520 5.520 13 C 0.047 3.953 14 C -0.093 4.093 15 C -0.112 4.112 16 S -0.132 6.132 17 C -0.517 4.517 18 H 0.071 0.929 19 C 0.071 3.929 20 N -0.870 5.870 21 Si 0.917 3.083 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 14.014 -18.370 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 H 0.110 0.890 4 C -0.109 4.109 5 C -0.132 4.132 6 C -0.145 4.145 7 C -0.140 4.140 8 C -0.138 4.138 9 C -0.071 4.071 10 C -0.162 4.162 11 C -0.077 4.077 12 N -0.241 5.241 13 C -0.082 4.082 14 C -0.132 4.132 15 C -0.261 4.261 16 S 0.097 5.903 17 C -0.665 4.665 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.506 5.506 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.223 14.658 -16.921 22.618 hybrid contribution -1.170 -2.173 -1.876 3.100 sum 2.054 12.485 -18.797 22.659 Atomic orbital electron populations 1.22003 0.93555 1.02436 1.02495 1.20621 0.95687 0.97586 0.85157 0.89006 1.20429 0.96002 0.98077 0.96420 1.21128 0.99788 1.00170 0.92079 1.21077 0.97484 0.97796 0.98153 1.21077 0.96553 0.98613 0.97757 1.21120 1.00398 0.99968 0.92294 1.19629 0.95740 0.96490 0.95270 1.21175 1.00270 1.01590 0.93126 1.22240 0.88521 0.98130 0.98844 1.62748 1.04697 1.21937 1.34718 1.22383 0.99378 0.88801 0.97618 1.21266 1.00462 0.95321 0.96111 1.23226 1.01897 0.98132 1.02833 1.84602 1.64400 1.23728 1.17601 1.22659 1.32481 1.04688 1.06672 0.91087 1.25003 0.95601 0.98505 0.94634 1.70013 1.37652 1.36577 1.06334 0.86240 0.80072 0.81727 0.77593 1.19973 1.20816 1.19936 0.91046 0.92123 0.92060 0.85990 0.86294 0.86272 0.86195 0.89493 0.90259 0.89237 0.90781 0.90369 0.94184 0.91755 0.90831 0.92228 0.92522 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.66 37.15 0.28 -1.16 16 2 C 0.12 1.28 2.84 -69.05 -0.20 1.08 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.21 5.04 -104.63 -0.53 -1.74 16 5 C -0.11 -1.14 9.08 -39.48 -0.36 -1.50 16 6 C -0.13 -1.22 10.05 -39.65 -0.40 -1.62 16 7 C -0.12 -1.21 10.05 -39.65 -0.40 -1.61 16 8 C -0.12 -1.30 9.66 -39.49 -0.38 -1.68 16 9 C -0.07 -0.83 5.09 -104.60 -0.53 -1.36 16 10 C -0.12 -1.39 5.15 -27.93 -0.14 -1.53 16 11 C 0.05 0.57 5.55 -3.74 -0.02 0.55 16 12 N -0.52 -6.41 4.90 -228.15 -1.12 -7.53 16 13 C 0.05 0.66 3.82 -3.83 -0.01 0.64 16 14 C -0.09 -1.54 5.11 -26.73 -0.14 -1.68 16 15 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 16 S -0.13 -3.48 21.44 -107.50 -2.30 -5.78 16 17 C -0.52 -15.01 9.50 30.94 0.29 -14.71 16 18 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.48 6.78 -51.92 -0.35 0.12 16 27 H 0.06 0.66 6.60 -51.93 -0.34 0.32 16 28 H 0.12 1.00 6.56 -52.49 -0.34 0.66 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.09 1.11 6.75 -51.93 -0.35 0.76 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.05 6.83 -51.93 -0.35 0.69 16 35 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.08 1.09 5.86 -51.93 -0.30 0.78 16 37 H 0.04 0.59 5.39 -51.93 -0.28 0.31 16 38 H 0.06 1.06 6.68 -51.93 -0.35 0.72 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 41 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.35 338.84 -11.46 -42.82 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.44 Total: 0.60 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.42 Total: -26.44 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: -0.38 Total: -33.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.35 -11.46 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173890051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.895 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds