Wall clock time and date at job start Tue Mar 31 2020 06:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.27035 * 2 1 4 4 C 1.50620 * 109.24698 * 240.50499 * 2 1 3 5 5 C 1.38732 * 118.42666 * 42.36376 * 4 2 1 6 6 C 1.38021 * 120.37770 * 179.73174 * 5 4 2 7 7 C 1.38266 * 119.86806 * 0.04204 * 6 5 4 8 8 C 1.38025 * 119.82591 * 0.06808 * 7 6 5 9 9 C 1.37834 * 121.84673 * 222.24857 * 4 2 1 10 10 C 1.50719 * 121.66488 * 0.42762 * 9 4 2 11 11 C 1.52894 * 109.95556 * 343.10075 * 10 9 4 12 12 N 1.46639 * 109.26910 * 119.51050 * 2 1 3 13 13 C 1.46900 * 111.00032 * 49.32151 * 12 2 1 14 14 C 1.52994 * 109.47320 * 187.54663 * 13 12 2 15 15 C 1.53004 * 109.47483 * 179.97438 * 14 13 12 16 16 S 1.81000 * 109.47429 * 179.97438 * 15 14 13 17 17 C 1.76194 * 100.00064 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00183 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00186 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99742 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99934 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47297 * 60.00527 * 21 19 17 23 23 H 1.48502 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47587 * 300.00080 * 21 19 17 25 25 H 1.08994 * 109.47613 * 293.10602 * 1 2 3 26 26 H 1.09008 * 109.46949 * 53.10852 * 1 2 3 27 27 H 1.09002 * 109.47163 * 173.10539 * 1 2 3 28 28 H 1.07997 * 119.80921 * 359.73641 * 5 4 2 29 29 H 1.07994 * 120.06237 * 180.32287 * 6 5 4 30 30 H 1.07997 * 120.08286 * 180.08667 * 7 6 5 31 31 H 1.08005 * 119.82392 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.38661 * 103.24843 * 10 9 4 33 33 H 1.09005 * 109.38734 * 223.04636 * 10 9 4 34 34 H 1.09001 * 109.63015 * 170.10330 * 11 10 9 35 35 H 1.09001 * 109.63115 * 290.49766 * 11 10 9 36 36 H 1.09006 * 109.46746 * 307.54608 * 13 12 2 37 37 H 1.08997 * 109.46998 * 67.54086 * 13 12 2 38 38 H 1.09006 * 109.47167 * 299.99688 * 14 13 12 39 39 H 1.08997 * 109.47555 * 59.99765 * 14 13 12 40 40 H 1.08998 * 109.47111 * 300.00189 * 15 14 13 41 41 H 1.09004 * 109.46762 * 59.99888 * 15 14 13 42 42 H 0.97000 * 120.00143 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8896 1.0289 0.0000 4 6 2.0264 -0.7001 -1.2377 5 6 1.3930 -0.4378 -2.4438 6 6 1.8185 -1.0529 -3.6038 7 6 2.8814 -1.9364 -3.5649 8 6 3.5112 -2.2001 -2.3653 9 6 3.0844 -1.5827 -1.1991 10 6 3.7995 -1.9048 0.0880 11 6 3.4748 -0.8479 1.1440 12 7 2.0138 -0.6819 1.2047 13 6 1.3437 -1.9771 1.3816 14 6 1.7313 -2.5709 2.7372 15 6 1.0329 -3.9197 2.9218 16 16 1.4920 -4.6225 4.5253 17 6 0.5745 -6.1258 4.4745 18 1 -0.0333 -6.3587 3.6125 19 6 0.6334 -7.0114 5.5417 20 7 1.3745 -6.7278 6.5919 21 14 -0.3399 -8.6048 5.4880 22 1 0.1012 -9.4154 4.3246 23 1 -0.1084 -9.3686 6.7403 24 1 -1.7867 -8.2970 5.3569 25 1 -0.3634 0.4033 0.9451 26 1 -0.3633 0.6170 -0.8220 27 1 -0.3633 -1.0202 -0.1234 28 1 0.5624 0.2516 -2.4752 29 1 1.3251 -0.8410 -4.5408 30 1 3.2181 -2.4185 -4.4707 31 1 4.3412 -2.8906 -2.3348 32 1 3.4788 -2.8835 0.4449 33 1 4.8749 -1.9189 -0.0893 34 1 3.8470 -1.1741 2.1151 35 1 3.9428 0.0980 0.8713 36 1 0.2636 -1.8357 1.3422 37 1 1.6504 -2.6564 0.5862 38 1 2.8114 -2.7123 2.7766 39 1 1.4247 -1.8916 3.5326 40 1 -0.0471 -3.7779 2.8826 41 1 1.3392 -4.5992 2.1265 42 1 1.4154 -7.3465 7.3379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173890051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:23 Heat of formation + Delta-G solvation = -2.072712 kcal Electronic energy + Delta-G solvation = -20777.559237 eV Core-core repulsion = 17847.066268 eV Total energy + Delta-G solvation = -2930.492969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 9.23 seconds Orbital eigenvalues (eV) -41.70212 -38.57686 -34.97184 -34.62406 -34.49605 -31.80344 -30.71719 -28.49782 -27.89854 -27.18247 -24.45043 -23.94944 -22.36674 -22.22567 -19.83059 -19.56014 -17.71951 -17.10547 -16.89802 -16.73973 -16.61446 -15.96653 -15.54726 -15.31029 -15.10544 -14.85942 -14.69063 -14.04816 -13.84892 -13.48716 -13.41448 -13.24224 -13.08010 -12.91297 -12.86524 -12.65410 -12.57442 -12.39169 -12.32074 -12.08957 -11.92383 -11.61219 -11.40702 -11.25601 -11.13193 -10.32465 -9.69286 -9.51446 -9.27351 -8.66534 -8.37420 -6.13667 0.41589 0.45173 1.30722 1.40252 1.46994 1.73973 2.28190 2.80741 2.93934 2.96557 3.32748 3.71942 3.77458 3.94640 3.95748 4.02543 4.13934 4.22466 4.27051 4.36471 4.39964 4.42384 4.48879 4.60109 4.64364 4.68848 4.72605 4.75427 4.87840 4.97434 5.00974 5.09111 5.13956 5.17393 5.20762 5.30313 5.36225 5.38853 5.51969 5.60792 5.68765 6.07072 6.10940 6.16302 6.17509 7.04493 8.71808 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.003260 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.063925 B = 8586.388810 C = 8877.753862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.119 3.881 3 H 0.103 0.897 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.131 4.131 7 C -0.128 4.128 8 C -0.135 4.135 9 C -0.091 4.091 10 C -0.118 4.118 11 C 0.050 3.950 12 N -0.525 5.525 13 C 0.063 3.937 14 C -0.080 4.080 15 C -0.086 4.086 16 S -0.192 6.192 17 C -0.541 4.541 18 H 0.071 0.929 19 C 0.016 3.984 20 N -0.907 5.907 21 Si 0.993 3.007 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.264 1.264 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 14.368 -20.276 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 H 0.120 0.880 4 C -0.122 4.122 5 C -0.137 4.137 6 C -0.148 4.148 7 C -0.146 4.146 8 C -0.153 4.153 9 C -0.091 4.091 10 C -0.157 4.157 11 C -0.077 4.077 12 N -0.247 5.247 13 C -0.067 4.067 14 C -0.119 4.119 15 C -0.236 4.236 16 S 0.036 5.964 17 C -0.689 4.689 18 H 0.089 0.911 19 C -0.189 4.189 20 N -0.543 5.543 21 Si 0.815 3.185 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.189 1.189 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.145 0.855 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.358 15.028 -18.835 24.211 hybrid contribution -0.863 -2.196 -1.363 2.725 sum 1.494 12.831 -20.199 23.976 Atomic orbital electron populations 1.21986 0.92772 1.02110 1.03284 1.20694 0.96296 0.97682 0.84287 0.87975 1.20540 0.96207 0.98394 0.97044 1.21394 1.00114 1.00399 0.91774 1.21426 0.97227 0.97138 0.99056 1.21390 0.96495 0.98597 0.98134 1.21328 1.00993 1.00322 0.92615 1.19757 0.96457 0.97419 0.95490 1.21094 1.01004 1.00370 0.93184 1.22262 0.88070 0.98873 0.98545 1.62717 1.05157 1.20677 1.36113 1.22110 0.99622 0.89590 0.95336 1.21137 0.99931 0.93089 0.97707 1.23137 1.02206 0.99531 0.98699 1.84594 1.65107 1.24103 1.22554 1.23017 1.32997 1.05771 1.07125 0.91099 1.26057 0.96504 1.02354 0.93946 1.70145 1.38991 1.38092 1.07095 0.85084 0.78582 0.76751 0.78121 1.18978 1.19831 1.18910 0.91346 0.89886 0.93262 0.84110 0.83926 0.84329 0.85543 0.91487 0.89152 0.90027 0.89410 0.90092 0.94785 0.91829 0.91440 0.92104 0.92588 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.66 71.98 0.55 -1.99 16 2 C 0.12 2.36 2.84 44.19 0.13 2.49 16 3 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.12 -2.52 5.04 -19.87 -0.10 -2.62 16 5 C -0.12 -2.11 9.08 22.34 0.20 -1.91 16 6 C -0.13 -2.18 10.05 22.22 0.22 -1.95 16 7 C -0.13 -2.29 10.05 22.23 0.22 -2.07 16 8 C -0.13 -2.78 9.66 22.33 0.22 -2.56 16 9 C -0.09 -2.04 5.09 -19.85 -0.10 -2.14 16 10 C -0.12 -2.63 5.15 29.82 0.15 -2.47 16 11 C 0.05 1.11 5.55 86.22 0.48 1.59 16 12 N -0.53 -12.48 4.90 -875.73 -4.29 -16.77 16 13 C 0.06 1.73 3.82 86.30 0.33 2.06 16 14 C -0.08 -2.67 5.11 30.59 0.16 -2.51 16 15 C -0.09 -3.58 5.67 71.98 0.41 -3.18 16 16 S -0.19 -10.44 21.44 -56.49 -1.21 -11.65 16 17 C -0.54 -31.87 9.50 67.95 0.65 -31.22 16 18 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 19 C 0.02 0.95 5.49 84.86 0.47 1.41 16 20 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 21 Si 0.99 44.40 29.55 68.60 2.03 46.43 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.07 6.78 -2.38 -0.02 1.06 16 27 H 0.05 0.99 6.60 -2.39 -0.02 0.97 16 28 H 0.14 1.87 6.56 -2.91 -0.02 1.85 16 29 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.07 1.74 6.75 -2.39 -0.02 1.72 16 33 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 1.91 6.83 -2.39 -0.02 1.89 16 35 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 36 H 0.08 2.19 5.86 -2.38 -0.01 2.17 16 37 H 0.03 0.99 5.39 -2.39 -0.01 0.98 16 38 H 0.06 2.14 6.68 -2.38 -0.02 2.12 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.06 2.50 8.14 -2.40 -0.02 2.48 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -67.59 338.84 1.78 -65.81 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.99 Total: 18.33 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 3.98 Total: -47.07 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -4.01 Total: -71.84 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -10.44 SS G_CDS: -1.21 Total: -11.65 kcal Total: -67.59 1.78 -65.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173890051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.733 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.23 seconds