Wall clock time and date at job start Tue Mar 31 2020 06:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.79162 * 2 1 4 4 C 1.52880 * 109.63760 * 120.48421 * 2 1 3 5 5 C 1.50722 * 109.96117 * 170.11368 * 4 2 1 6 6 C 1.38672 * 118.48852 * 163.32514 * 5 4 2 7 7 C 1.38034 * 120.34759 * 179.55604 * 6 5 4 8 8 C 1.38261 * 119.82792 * 0.02562 * 7 6 5 9 9 C 1.38020 * 119.86606 * 0.07972 * 8 7 6 10 10 C 1.37833 * 121.65781 * 343.02884 * 5 4 2 11 11 C 1.50624 * 121.84637 * 0.54723 * 10 5 4 12 12 N 1.46635 * 110.49727 * 342.40411 * 11 10 5 13 13 C 1.46901 * 110.99886 * 175.95030 * 12 11 10 14 14 C 1.52999 * 109.47009 * 65.18086 * 13 12 11 15 15 C 1.53008 * 109.46839 * 179.97438 * 14 13 12 16 16 S 1.81001 * 109.46940 * 179.97438 * 15 14 13 17 17 C 1.76198 * 99.99697 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00309 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99855 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99666 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47590 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47114 * 240.00010 * 21 19 17 24 24 H 1.48505 * 109.47089 * 120.00188 * 21 19 17 25 25 H 1.08996 * 109.47291 * 173.39342 * 1 2 3 26 26 H 1.09003 * 109.46400 * 293.38906 * 1 2 3 27 27 H 1.09001 * 109.47341 * 53.38530 * 1 2 3 28 28 H 1.08997 * 109.40016 * 49.95578 * 4 2 1 29 29 H 1.09010 * 109.30330 * 290.20461 * 4 2 1 30 30 H 1.08004 * 119.82724 * 359.54750 * 6 5 4 31 31 H 1.08002 * 120.08402 * 180.02562 * 7 6 5 32 32 H 1.07996 * 120.06597 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.80594 * 179.97438 * 9 8 7 34 34 H 1.09005 * 109.26805 * 222.14283 * 11 10 5 35 35 H 1.09003 * 109.27335 * 102.67091 * 11 10 5 36 36 H 1.09001 * 109.47076 * 305.17682 * 13 12 11 37 37 H 1.08999 * 109.46818 * 185.18298 * 13 12 11 38 38 H 1.08997 * 109.47078 * 60.00085 * 14 13 12 39 39 H 1.08993 * 109.47099 * 299.99669 * 14 13 12 40 40 H 1.08997 * 109.46977 * 60.00315 * 15 14 13 41 41 H 1.08999 * 109.47141 * 300.00306 * 15 14 13 42 42 H 0.97001 * 120.00398 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0438 -0.7305 1.2408 5 6 3.5312 -0.9480 1.1309 6 6 4.2394 -1.2686 2.2792 7 6 5.6015 -1.4849 2.2209 8 6 6.2632 -1.3809 1.0113 9 6 5.5594 -1.0597 -0.1317 10 6 4.1907 -0.8415 -0.0748 11 6 3.4670 -0.4904 -1.3482 12 7 2.0243 -0.7033 -1.1944 13 6 1.2977 -0.2738 -2.3967 14 6 1.6922 -1.1646 -3.5764 15 6 0.9348 -0.7176 -4.8286 16 16 1.4021 -1.7709 -6.2244 17 6 0.4123 -1.0538 -7.4935 18 1 -0.2286 -0.2140 -7.2689 19 6 0.4562 -1.5683 -8.7820 20 7 1.2369 -2.5921 -9.0555 21 14 -0.5926 -0.8076 -10.1276 22 1 -1.3760 0.3219 -9.5657 23 1 -1.5211 -1.8318 -10.6700 24 1 0.2850 -0.3086 -11.2167 25 1 -0.3634 -1.0208 -0.1182 26 1 -0.3632 0.4080 0.9433 27 1 -0.3634 0.6129 -0.8249 28 1 1.5425 -1.6945 1.3270 29 1 1.8302 -0.1312 2.1260 30 1 3.7227 -1.3493 3.2241 31 1 6.1488 -1.7348 3.1178 32 1 7.3287 -1.5498 0.9612 33 1 6.0774 -0.9783 -1.0760 34 1 3.8389 -1.1181 -2.1581 35 1 3.6524 0.5560 -1.5906 36 1 1.5501 0.7621 -2.6232 37 1 0.2250 -0.3564 -2.2218 38 1 1.4397 -2.2005 -3.3499 39 1 2.7648 -1.0819 -3.7513 40 1 1.1870 0.3183 -5.0552 41 1 -0.1378 -0.8005 -4.6534 42 1 1.7818 -2.9869 -8.3569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173899622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:51 Heat of formation + Delta-G solvation = 4.209641 kcal Electronic energy + Delta-G solvation = -20284.787696 eV Core-core repulsion = 17354.567150 eV Total energy + Delta-G solvation = -2930.220546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40670 -37.94926 -34.38453 -32.79461 -32.51084 -31.68454 -30.29733 -26.86927 -26.42174 -25.01544 -23.92852 -22.28771 -21.79283 -20.88070 -19.43221 -18.11934 -16.96864 -15.96664 -15.89553 -15.15940 -14.83494 -14.73550 -14.63651 -14.04654 -13.86057 -13.68298 -13.43352 -13.19672 -12.78737 -12.63481 -12.47760 -12.16570 -12.05651 -11.99913 -11.83987 -11.34998 -11.23616 -11.10656 -10.91779 -10.81796 -10.56472 -10.27430 -10.20354 -9.34365 -8.99298 -8.98226 -8.72525 -8.34734 -8.29030 -6.68273 -6.61638 -3.99158 1.20907 1.22450 3.26573 3.39424 3.40298 3.54531 3.58535 3.79508 4.26087 4.47048 4.48826 4.73433 4.80822 4.87881 5.00561 5.08941 5.14823 5.22917 5.23415 5.26989 5.32472 5.37550 5.43026 5.51099 5.54833 5.60714 5.65052 5.68341 5.77197 5.82302 5.85697 5.97199 6.00735 6.07949 6.23425 6.32523 6.34144 6.44954 6.51199 6.66642 6.84238 6.98997 7.06460 7.96992 8.51528 9.28547 10.82913 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027911 B = 0.002868 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.936469 B = 9758.984396 C =10551.204965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 H 0.044 0.956 4 C -0.070 4.070 5 C -0.069 4.069 6 C -0.123 4.123 7 C -0.124 4.124 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.073 4.073 11 C 0.089 3.911 12 N -0.526 5.526 13 C 0.054 3.946 14 C -0.096 4.096 15 C -0.089 4.089 16 S -0.190 6.190 17 C -0.587 4.587 18 H 0.066 0.934 19 C 0.032 3.968 20 N -0.888 5.888 21 Si 1.089 2.911 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.033 0.967 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 5.449 23.729 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 H 0.062 0.938 4 C -0.107 4.107 5 C -0.069 4.069 6 C -0.141 4.141 7 C -0.142 4.142 8 C -0.142 4.142 9 C -0.134 4.134 10 C -0.073 4.073 11 C -0.039 4.039 12 N -0.251 5.251 13 C -0.075 4.075 14 C -0.135 4.135 15 C -0.238 4.238 16 S 0.038 5.962 17 C -0.735 4.735 18 H 0.084 0.916 19 C -0.178 4.178 20 N -0.523 5.523 21 Si 0.916 3.084 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.981 3.941 22.130 23.023 hybrid contribution -0.275 2.086 1.500 2.584 sum 4.707 6.027 23.630 24.836 Atomic orbital electron populations 1.21968 0.93912 1.03069 1.01905 1.21656 0.95510 0.95355 0.90572 0.93846 1.20594 0.91410 1.01507 0.97229 1.19590 0.95635 0.99199 0.92524 1.21070 0.94363 1.00842 0.97790 1.21058 0.94572 1.00749 0.97809 1.21044 0.99813 1.00571 0.92758 1.21084 0.93522 0.99967 0.98805 1.19636 0.93646 0.99735 0.94304 1.21039 0.87769 0.99847 0.95209 1.62353 1.02768 1.57035 1.02907 1.22323 0.99219 0.96895 0.89023 1.21324 1.00188 1.00179 0.91801 1.23037 1.01799 1.01865 0.97136 1.84168 1.61330 1.46451 1.04232 1.23591 1.31187 1.22111 0.96657 0.91616 1.26083 0.97976 0.95358 0.98371 1.70735 1.23610 1.20816 1.37108 0.83249 0.75336 0.75355 0.74471 1.21412 1.20879 1.20901 0.91257 0.92070 0.92067 0.89680 0.90644 0.86279 0.86268 0.86130 0.85944 0.88707 0.93521 0.94892 0.89766 0.90686 0.91757 0.92128 0.91861 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.14 37.16 0.30 -1.09 16 2 C 0.08 0.81 2.60 -67.63 -0.18 0.64 16 3 H 0.04 0.47 8.05 -51.93 -0.42 0.05 16 4 C -0.07 -0.67 5.25 -27.93 -0.15 -0.82 16 5 C -0.07 -0.76 5.77 -104.60 -0.60 -1.37 16 6 C -0.12 -1.19 9.66 -39.50 -0.38 -1.57 16 7 C -0.12 -1.14 10.05 -39.65 -0.40 -1.54 16 8 C -0.12 -1.19 10.05 -39.65 -0.40 -1.59 16 9 C -0.12 -1.24 9.65 -39.48 -0.38 -1.63 16 10 C -0.07 -0.86 5.79 -104.63 -0.61 -1.47 16 11 C 0.09 1.09 4.87 -5.16 -0.03 1.07 16 12 N -0.53 -6.60 4.59 -228.22 -1.05 -7.65 16 13 C 0.05 0.73 4.42 -3.82 -0.02 0.71 16 14 C -0.10 -1.58 5.11 -26.73 -0.14 -1.72 16 15 C -0.09 -1.81 5.67 37.16 0.21 -1.60 16 16 S -0.19 -4.98 20.46 -107.50 -2.20 -7.18 16 17 C -0.59 -17.20 9.50 30.94 0.29 -16.91 16 18 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 19 C 0.03 0.94 5.49 -17.43 -0.10 0.84 16 20 N -0.89 -27.63 13.67 55.49 0.76 -26.87 16 21 Si 1.09 25.38 29.92 -169.99 -5.09 20.30 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.58 6.66 -51.93 -0.35 0.23 16 28 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 29 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.09 1.22 6.60 -51.93 -0.34 0.88 16 35 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.03 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.08 1.08 5.85 -51.93 -0.30 0.78 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.07 6.61 -51.93 -0.34 0.72 16 40 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 41 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 42 H 0.28 8.74 7.12 -40.82 -0.29 8.45 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -32.25 346.05 -11.66 -43.91 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.74 Total: 0.30 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -2.56 Total: -28.02 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.29 Total: -34.52 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.30 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.20 Total: -7.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.25 -11.66 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173899622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.119 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds