Wall clock time and date at job start Tue Mar 31 2020 06:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.79162 * 2 1 4 4 C 1.52880 * 109.63760 * 120.48421 * 2 1 3 5 5 C 1.50722 * 109.96117 * 170.11368 * 4 2 1 6 6 C 1.38672 * 118.48852 * 163.32514 * 5 4 2 7 7 C 1.38034 * 120.34759 * 179.55604 * 6 5 4 8 8 C 1.38261 * 119.82792 * 0.02562 * 7 6 5 9 9 C 1.38020 * 119.86606 * 0.07972 * 8 7 6 10 10 C 1.37833 * 121.65781 * 343.02884 * 5 4 2 11 11 C 1.50624 * 121.84637 * 0.54723 * 10 5 4 12 12 N 1.46635 * 110.49727 * 342.40411 * 11 10 5 13 13 C 1.46901 * 110.99886 * 175.95030 * 12 11 10 14 14 C 1.52999 * 109.47009 * 65.18086 * 13 12 11 15 15 C 1.53008 * 109.46839 * 179.97438 * 14 13 12 16 16 S 1.81001 * 109.46940 * 179.97438 * 15 14 13 17 17 C 1.76198 * 99.99697 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00309 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99855 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99666 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47590 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47114 * 240.00010 * 21 19 17 24 24 H 1.48505 * 109.47089 * 120.00188 * 21 19 17 25 25 H 1.08996 * 109.47291 * 173.39342 * 1 2 3 26 26 H 1.09003 * 109.46400 * 293.38906 * 1 2 3 27 27 H 1.09001 * 109.47341 * 53.38530 * 1 2 3 28 28 H 1.08997 * 109.40016 * 49.95578 * 4 2 1 29 29 H 1.09010 * 109.30330 * 290.20461 * 4 2 1 30 30 H 1.08004 * 119.82724 * 359.54750 * 6 5 4 31 31 H 1.08002 * 120.08402 * 180.02562 * 7 6 5 32 32 H 1.07996 * 120.06597 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.80594 * 179.97438 * 9 8 7 34 34 H 1.09005 * 109.26805 * 222.14283 * 11 10 5 35 35 H 1.09003 * 109.27335 * 102.67091 * 11 10 5 36 36 H 1.09001 * 109.47076 * 305.17682 * 13 12 11 37 37 H 1.08999 * 109.46818 * 185.18298 * 13 12 11 38 38 H 1.08997 * 109.47078 * 60.00085 * 14 13 12 39 39 H 1.08993 * 109.47099 * 299.99669 * 14 13 12 40 40 H 1.08997 * 109.46977 * 60.00315 * 15 14 13 41 41 H 1.08999 * 109.47141 * 300.00306 * 15 14 13 42 42 H 0.97001 * 120.00398 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0438 -0.7305 1.2408 5 6 3.5312 -0.9480 1.1309 6 6 4.2394 -1.2686 2.2792 7 6 5.6015 -1.4849 2.2209 8 6 6.2632 -1.3809 1.0113 9 6 5.5594 -1.0597 -0.1317 10 6 4.1907 -0.8415 -0.0748 11 6 3.4670 -0.4904 -1.3482 12 7 2.0243 -0.7033 -1.1944 13 6 1.2977 -0.2738 -2.3967 14 6 1.6922 -1.1646 -3.5764 15 6 0.9348 -0.7176 -4.8286 16 16 1.4021 -1.7709 -6.2244 17 6 0.4123 -1.0538 -7.4935 18 1 -0.2286 -0.2140 -7.2689 19 6 0.4562 -1.5683 -8.7820 20 7 1.2369 -2.5921 -9.0555 21 14 -0.5926 -0.8076 -10.1276 22 1 -1.3760 0.3219 -9.5657 23 1 -1.5211 -1.8318 -10.6700 24 1 0.2850 -0.3086 -11.2167 25 1 -0.3634 -1.0208 -0.1182 26 1 -0.3632 0.4080 0.9433 27 1 -0.3634 0.6129 -0.8249 28 1 1.5425 -1.6945 1.3270 29 1 1.8302 -0.1312 2.1260 30 1 3.7227 -1.3493 3.2241 31 1 6.1488 -1.7348 3.1178 32 1 7.3287 -1.5498 0.9612 33 1 6.0774 -0.9783 -1.0760 34 1 3.8389 -1.1181 -2.1581 35 1 3.6524 0.5560 -1.5906 36 1 1.5501 0.7621 -2.6232 37 1 0.2250 -0.3564 -2.2218 38 1 1.4397 -2.2005 -3.3499 39 1 2.7648 -1.0819 -3.7513 40 1 1.1870 0.3183 -5.0552 41 1 -0.1378 -0.8005 -4.6534 42 1 1.7818 -2.9869 -8.3569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173899622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:51 Heat of formation + Delta-G solvation = -13.294923 kcal Electronic energy + Delta-G solvation = -20285.546751 eV Core-core repulsion = 17354.567150 eV Total energy + Delta-G solvation = -2930.979601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23251 -38.82947 -35.50306 -34.76416 -33.70980 -32.58548 -31.19654 -27.81235 -27.51748 -26.99571 -25.14760 -23.06731 -22.66226 -22.13368 -20.30241 -20.24464 -17.81844 -17.05880 -16.79179 -16.35825 -16.17174 -15.95279 -15.77072 -15.49513 -15.07396 -14.77279 -14.66325 -14.46351 -14.24329 -13.85788 -13.49749 -13.34306 -12.99322 -12.90246 -12.78613 -12.74256 -12.53622 -12.41958 -12.12634 -11.96695 -11.80768 -11.68281 -11.29707 -11.17232 -11.11627 -10.41231 -9.77681 -9.50754 -9.29126 -8.94945 -8.87538 -6.28980 0.43378 0.46976 1.40861 1.56488 1.58656 1.76842 2.31686 2.74998 2.85018 2.99523 3.12636 3.66299 3.70216 3.83776 3.95516 4.08766 4.09995 4.18494 4.24336 4.30625 4.31442 4.39677 4.46273 4.50012 4.58651 4.61614 4.70034 4.75734 4.80674 4.86484 4.91951 5.04043 5.09413 5.10430 5.19192 5.26731 5.31072 5.56658 5.60250 5.62663 5.65791 6.03450 6.06130 6.15268 6.15893 7.03844 8.49739 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027911 B = 0.002868 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.936469 B = 9758.984396 C =10551.204965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 H 0.042 0.958 4 C -0.066 4.066 5 C -0.085 4.085 6 C -0.127 4.127 7 C -0.126 4.126 8 C -0.130 4.130 9 C -0.131 4.131 10 C -0.096 4.096 11 C 0.092 3.908 12 N -0.535 5.535 13 C 0.066 3.934 14 C -0.083 4.083 15 C -0.066 4.066 16 S -0.246 6.246 17 C -0.603 4.603 18 H 0.065 0.935 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.139 2.861 22 H -0.268 1.268 23 H -0.272 1.272 24 H -0.272 1.272 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 6.524 25.579 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 H 0.060 0.940 4 C -0.103 4.103 5 C -0.085 4.085 6 C -0.145 4.145 7 C -0.143 4.143 8 C -0.148 4.148 9 C -0.150 4.150 10 C -0.096 4.096 11 C -0.036 4.036 12 N -0.259 5.259 13 C -0.064 4.064 14 C -0.122 4.122 15 C -0.215 4.215 16 S -0.017 6.017 17 C -0.751 4.751 18 H 0.083 0.917 19 C -0.222 4.222 20 N -0.548 5.548 21 Si 0.958 3.042 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.197 1.197 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.325 5.014 24.013 24.910 hybrid contribution 0.003 1.747 1.065 2.046 sum 4.327 6.762 25.078 26.332 Atomic orbital electron populations 1.21950 0.92772 1.02754 1.03025 1.21759 0.96385 0.95114 0.89908 0.94041 1.20614 0.90529 1.01671 0.97532 1.19850 0.96504 0.99458 0.92673 1.21381 0.94759 1.00120 0.98252 1.21433 0.94715 0.99643 0.98544 1.21346 1.00893 1.00000 0.92581 1.21267 0.93520 1.00538 0.99666 1.19718 0.94198 1.01314 0.94414 1.20957 0.87824 0.99364 0.95454 1.62324 1.02813 1.57679 1.03131 1.22137 0.99853 0.96061 0.88300 1.21189 0.99389 1.00253 0.91371 1.23014 1.02387 1.00434 0.95669 1.84252 1.61791 1.48837 1.06860 1.23939 1.31294 1.22097 0.97758 0.91694 1.27800 0.98282 0.94906 1.01259 1.70853 1.24908 1.22288 1.36755 0.82667 0.74217 0.75404 0.71959 1.19307 1.19717 1.19745 0.91907 0.89900 0.92370 0.89866 0.88339 0.84015 0.83722 0.84210 0.85697 0.90211 0.93769 0.94505 0.88786 0.91648 0.92163 0.91844 0.91449 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.14 71.98 0.59 -1.82 16 2 C 0.08 1.48 2.60 44.83 0.12 1.60 16 3 H 0.04 0.83 8.05 -2.39 -0.02 0.82 16 4 C -0.07 -1.14 5.25 29.81 0.16 -0.99 16 5 C -0.08 -1.75 5.77 -19.85 -0.11 -1.86 16 6 C -0.13 -2.17 9.66 22.33 0.22 -1.96 16 7 C -0.13 -2.02 10.05 22.23 0.22 -1.80 16 8 C -0.13 -2.32 10.05 22.22 0.22 -2.10 16 9 C -0.13 -2.81 9.65 22.33 0.22 -2.60 16 10 C -0.10 -2.25 5.79 -19.87 -0.12 -2.36 16 11 C 0.09 2.28 4.87 85.58 0.42 2.69 16 12 N -0.53 -13.09 4.59 -875.94 -4.02 -17.11 16 13 C 0.07 1.71 4.42 86.30 0.38 2.09 16 14 C -0.08 -2.74 5.11 30.60 0.16 -2.59 16 15 C -0.07 -2.66 5.67 71.98 0.41 -2.26 16 16 S -0.25 -13.21 20.46 -56.49 -1.16 -14.37 16 17 C -0.60 -35.65 9.50 67.96 0.65 -35.00 16 18 H 0.06 3.73 7.80 -2.91 -0.02 3.71 16 19 C -0.02 -1.12 5.49 84.86 0.47 -0.66 16 20 N -0.91 -57.72 13.67 21.65 0.30 -57.42 16 21 Si 1.14 50.37 29.92 68.60 2.05 52.42 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.98 6.66 -2.39 -0.02 0.96 16 28 H 0.08 1.47 8.11 -2.39 -0.02 1.45 16 29 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.08 2.15 6.60 -2.38 -0.02 2.13 16 35 H 0.04 1.08 8.09 -2.39 -0.02 1.07 16 36 H 0.04 0.94 8.09 -2.39 -0.02 0.92 16 37 H 0.09 2.28 5.85 -2.39 -0.01 2.27 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.04 6.61 -2.39 -0.02 2.02 16 40 H 0.06 2.54 8.14 -2.40 -0.02 2.52 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.26 17.10 7.12 -92.71 -0.66 16.44 16 Total: -1.00 -70.12 346.05 2.24 -67.88 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.09 Total: 18.20 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 3.98 Total: -49.60 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -3.73 Total: -74.53 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.05 Total: 52.42 kcal Atomic # 16 Polarization: -13.21 SS G_CDS: -1.16 Total: -14.37 kcal Total: -70.12 2.24 -67.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173899622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.583 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds