Wall clock time and date at job start Tue Mar 31 2020 07:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76208 * 102.99952 * 2 1 4 4 C 1.38973 * 120.07839 * 179.97438 * 3 2 1 5 5 C 1.38077 * 119.91736 * 180.02562 * 4 3 2 6 6 C 1.38303 * 120.08151 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.92431 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46742 * 85.19576 * 7 6 5 9 9 C 1.46906 * 110.99777 * 75.25275 * 8 7 6 10 10 C 1.50702 * 109.46978 * 189.99623 * 9 8 7 11 11 H 1.08000 * 119.99946 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99597 * 179.72319 * 10 9 8 13 13 N 1.31520 * 119.99761 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00213 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47063 * 89.99985 * 14 12 10 16 16 H 1.48495 * 109.46941 * 209.99782 * 14 12 10 17 17 H 1.48498 * 109.46897 * 329.99841 * 14 12 10 18 18 C 1.46901 * 110.99866 * 199.19977 * 8 7 6 19 19 C 1.53001 * 109.46737 * 65.89582 * 18 8 7 20 20 C 1.53007 * 117.49732 * 242.63838 * 19 18 8 21 21 C 1.52996 * 60.00049 * 252.51275 * 20 19 18 22 22 C 1.38309 * 120.16142 * 0.27348 * 6 5 4 23 23 C 1.38084 * 120.07508 * 359.45328 * 22 6 5 24 24 H 1.09004 * 109.47045 * 59.99943 * 1 2 3 25 25 H 1.08996 * 109.46877 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47016 * 300.00225 * 1 2 3 27 27 H 1.07997 * 120.04118 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.96164 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46727 * 325.20008 * 7 6 5 30 30 H 1.08996 * 109.47269 * 205.20261 * 7 6 5 31 31 H 1.09006 * 109.46938 * 69.99484 * 9 8 7 32 32 H 1.09001 * 109.46916 * 309.99856 * 9 8 7 33 33 H 0.96996 * 119.99754 * 180.02562 * 13 12 10 34 34 H 1.08994 * 109.47153 * 185.89455 * 18 8 7 35 35 H 1.08996 * 109.47328 * 305.89956 * 18 8 7 36 36 H 1.08994 * 115.55167 * 28.35134 * 19 18 8 37 37 H 1.08995 * 117.49943 * 0.02562 * 20 19 18 38 38 H 1.09002 * 117.49636 * 145.02306 * 20 19 18 39 39 H 1.09005 * 117.49968 * 252.51247 * 21 20 19 40 40 H 1.09003 * 117.50037 * 107.49373 * 21 20 19 41 41 H 1.07996 * 119.96237 * 179.71961 * 22 6 5 42 42 H 1.08003 * 120.03523 * 180.26912 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5389 2.1251 0.0005 5 6 3.8457 3.4713 0.0011 6 6 2.8329 4.4131 0.0005 7 6 3.1718 5.8816 0.0005 8 7 3.3955 6.3324 -1.3796 9 6 2.1234 6.4682 -2.1017 10 6 2.3987 6.6903 -3.5667 11 1 3.4168 6.7272 -3.9253 12 6 1.3507 6.8410 -4.4498 13 7 1.5909 7.0353 -5.7282 14 14 -0.4102 6.7707 -3.8305 15 1 -0.8572 8.1358 -3.4535 16 1 -1.2908 6.2398 -4.9018 17 1 -0.4824 5.8808 -2.6439 18 6 4.1528 7.5909 -1.4060 19 6 5.5635 7.3486 -0.8656 20 6 5.9693 8.0925 0.4084 21 6 6.5579 8.5090 -0.9410 22 6 1.5097 4.0106 0.0052 23 6 1.1953 2.6661 -0.0010 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.3302 1.3902 0.0005 28 1 4.8778 3.7893 0.0019 29 1 4.0755 6.0458 0.5874 30 1 2.3473 6.4447 0.4377 31 1 1.5684 7.3176 -1.7034 32 1 1.5355 5.5590 -1.9762 33 1 0.8537 7.1417 -6.3495 34 1 4.2142 7.9565 -2.4310 35 1 3.6483 8.3316 -0.7857 36 1 5.9543 6.3410 -1.0065 37 1 5.2312 8.7541 0.8617 38 1 6.6273 7.5741 1.1059 39 1 7.6030 8.2646 -1.1313 40 1 6.2071 9.4450 -1.3758 41 1 0.7214 4.7488 0.0093 42 1 0.1618 2.3525 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174694203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:36 Heat of formation + Delta-G solvation = 53.001572 kcal Electronic energy + Delta-G solvation = -20837.251694 eV Core-core repulsion = 17909.146925 eV Total energy + Delta-G solvation = -2928.104769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.20342 -37.72751 -35.54344 -32.60977 -31.43963 -30.94907 -28.98745 -28.11287 -26.61016 -23.98753 -22.45753 -22.18662 -21.42835 -20.51662 -19.61271 -17.58534 -16.92671 -15.79225 -15.55306 -15.30757 -14.59435 -14.51323 -14.18510 -14.10565 -13.90880 -13.66720 -13.48805 -13.04558 -12.73876 -12.46828 -12.36386 -12.20235 -11.93043 -11.55852 -11.34340 -11.18707 -10.95074 -10.78526 -10.71792 -10.43153 -10.22287 -9.91098 -9.81702 -9.62879 -9.33100 -9.20353 -8.73301 -8.56820 -7.45475 -7.26101 -6.05502 -4.02071 1.41655 1.54809 1.61781 2.40817 3.25372 3.33435 3.34240 3.87315 4.08230 4.40637 4.73714 4.92190 4.94870 4.97795 5.09351 5.09960 5.21328 5.24580 5.27760 5.39740 5.49165 5.57441 5.64661 5.76471 5.81728 5.86560 5.89736 6.07717 6.09449 6.20014 6.25252 6.29673 6.42370 6.45013 6.54804 6.72253 6.85204 6.90936 6.98931 7.13709 7.60570 7.89221 8.03157 8.65053 9.03758 9.56424 11.07719 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.005693 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.331400 B = 4916.849295 C = 7013.777628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.134 6.134 3 C -0.091 4.091 4 C -0.101 4.101 5 C -0.080 4.080 6 C -0.058 4.058 7 C 0.087 3.913 8 N -0.518 5.518 9 C 0.160 3.840 10 C -0.506 4.506 11 H 0.082 0.918 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.871 3.129 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.267 1.267 18 C 0.092 3.908 19 C -0.136 4.136 20 C -0.192 4.192 21 C -0.180 4.180 22 C -0.091 4.091 23 C -0.132 4.132 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.032 0.968 31 H -0.019 1.019 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.096 0.904 35 H 0.022 0.978 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 -7.365 14.965 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.107 5.893 3 C -0.203 4.203 4 C -0.124 4.124 5 C -0.100 4.100 6 C -0.061 4.061 7 C -0.041 4.041 8 N -0.241 5.241 9 C 0.034 3.966 10 C -0.545 4.545 11 H 0.100 0.900 12 C -0.132 4.132 13 N -0.539 5.539 14 Si 0.699 3.301 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.036 4.036 19 C -0.155 4.155 20 C -0.229 4.229 21 C -0.218 4.218 22 C -0.112 4.112 23 C -0.155 4.155 24 H 0.103 0.897 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.097 0.903 30 H 0.051 0.949 31 H -0.001 1.001 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.040 0.960 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.873 -8.742 14.538 17.206 hybrid contribution -2.425 1.719 0.459 3.008 sum 0.448 -7.024 14.997 16.566 Atomic orbital electron populations 1.23626 0.94953 1.06710 1.05735 1.85267 1.06353 1.04385 1.93299 1.21540 0.96785 0.95579 1.06395 1.20661 0.93927 0.96100 1.01723 1.20875 0.99257 0.91633 0.98229 1.19887 0.92755 0.95859 0.97596 1.21079 1.00089 0.90762 0.92202 1.61936 1.21997 1.29599 1.10568 1.20250 0.86271 0.95192 0.94927 1.21031 0.95520 1.48473 0.89451 0.90035 1.24879 0.98621 0.94963 0.94763 1.69891 1.31822 1.49952 1.02208 0.86919 0.85720 0.78583 0.78909 1.20395 1.21162 1.19204 1.21629 0.89885 0.90190 1.01890 1.22431 0.96359 0.97063 0.99604 1.23048 1.04052 1.04636 0.91202 1.22899 0.98582 0.99846 1.00464 1.20975 0.96368 0.95070 0.98755 1.21030 0.97811 0.93162 1.03536 0.89663 0.87706 0.89923 0.85885 0.85573 0.90313 0.94937 1.00093 0.94813 0.92710 0.88584 0.96026 0.87308 0.89352 0.89446 0.89194 0.88959 0.86167 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.15 101.05 0.92 -0.41 16 2 S -0.13 -1.68 22.57 -107.50 -2.43 -4.10 16 3 C -0.09 -1.34 6.11 -39.04 -0.24 -1.58 16 4 C -0.10 -1.48 9.79 -39.37 -0.39 -1.86 16 5 C -0.08 -1.21 9.71 -39.62 -0.38 -1.60 16 6 C -0.06 -0.96 5.04 -104.57 -0.53 -1.49 16 7 C 0.09 1.44 4.99 -4.97 -0.02 1.42 16 8 N -0.52 -10.42 4.42 -237.51 -1.05 -11.47 16 9 C 0.16 3.80 3.62 -4.97 -0.02 3.79 16 10 C -0.51 -14.24 8.93 -34.44 -0.31 -14.55 16 11 H 0.08 2.50 7.42 -52.49 -0.39 2.11 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 14 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 18 C 0.09 1.69 5.09 -3.82 -0.02 1.67 16 19 C -0.14 -2.04 4.65 -90.61 -0.42 -2.46 16 20 C -0.19 -2.38 9.99 -26.73 -0.27 -2.65 16 21 C -0.18 -2.35 10.25 -26.73 -0.27 -2.62 16 22 C -0.09 -1.50 8.35 -39.61 -0.33 -1.83 16 23 C -0.13 -1.99 9.36 -39.37 -0.37 -2.36 16 24 H 0.08 0.83 7.75 -51.92 -0.40 0.43 16 25 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.71 7.75 -51.92 -0.40 0.31 16 27 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.08 1.16 6.66 -51.93 -0.35 0.81 16 30 H 0.03 0.54 7.91 -51.93 -0.41 0.13 16 31 H -0.02 -0.44 7.56 -51.93 -0.39 -0.84 16 32 H 0.03 0.83 5.29 -51.93 -0.27 0.55 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.10 2.04 6.65 -51.93 -0.35 1.70 16 35 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 36 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.12 1.93 7.97 -52.49 -0.42 1.51 16 42 H 0.12 1.54 5.88 -52.48 -0.31 1.23 16 LS Contribution 351.51 15.07 5.30 5.30 Total: -1.00 -30.50 351.51 -11.46 -41.96 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.64 Total: 2.90 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -2.74 Total: -24.63 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.28 Total: -38.22 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.43 Total: -4.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.50 -11.46 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174694203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.961 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds