Wall clock time and date at job start Tue Mar 31 2020 07:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76208 * 102.99952 * 2 1 4 4 C 1.38973 * 120.07839 * 179.97438 * 3 2 1 5 5 C 1.38077 * 119.91736 * 180.02562 * 4 3 2 6 6 C 1.38303 * 120.08151 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.92431 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46742 * 85.19576 * 7 6 5 9 9 C 1.46906 * 110.99777 * 75.25275 * 8 7 6 10 10 C 1.50702 * 109.46978 * 189.99623 * 9 8 7 11 11 H 1.08000 * 119.99946 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99597 * 179.72319 * 10 9 8 13 13 N 1.31520 * 119.99761 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00213 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47063 * 89.99985 * 14 12 10 16 16 H 1.48495 * 109.46941 * 209.99782 * 14 12 10 17 17 H 1.48498 * 109.46897 * 329.99841 * 14 12 10 18 18 C 1.46901 * 110.99866 * 199.19977 * 8 7 6 19 19 C 1.53001 * 109.46737 * 65.89582 * 18 8 7 20 20 C 1.53007 * 117.49732 * 242.63838 * 19 18 8 21 21 C 1.52996 * 60.00049 * 252.51275 * 20 19 18 22 22 C 1.38309 * 120.16142 * 0.27348 * 6 5 4 23 23 C 1.38084 * 120.07508 * 359.45328 * 22 6 5 24 24 H 1.09004 * 109.47045 * 59.99943 * 1 2 3 25 25 H 1.08996 * 109.46877 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47016 * 300.00225 * 1 2 3 27 27 H 1.07997 * 120.04118 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.96164 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46727 * 325.20008 * 7 6 5 30 30 H 1.08996 * 109.47269 * 205.20261 * 7 6 5 31 31 H 1.09006 * 109.46938 * 69.99484 * 9 8 7 32 32 H 1.09001 * 109.46916 * 309.99856 * 9 8 7 33 33 H 0.96996 * 119.99754 * 180.02562 * 13 12 10 34 34 H 1.08994 * 109.47153 * 185.89455 * 18 8 7 35 35 H 1.08996 * 109.47328 * 305.89956 * 18 8 7 36 36 H 1.08994 * 115.55167 * 28.35134 * 19 18 8 37 37 H 1.08995 * 117.49943 * 0.02562 * 20 19 18 38 38 H 1.09002 * 117.49636 * 145.02306 * 20 19 18 39 39 H 1.09005 * 117.49968 * 252.51247 * 21 20 19 40 40 H 1.09003 * 117.50037 * 107.49373 * 21 20 19 41 41 H 1.07996 * 119.96237 * 179.71961 * 22 6 5 42 42 H 1.08003 * 120.03523 * 180.26912 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5389 2.1251 0.0005 5 6 3.8457 3.4713 0.0011 6 6 2.8329 4.4131 0.0005 7 6 3.1718 5.8816 0.0005 8 7 3.3955 6.3324 -1.3796 9 6 2.1234 6.4682 -2.1017 10 6 2.3987 6.6903 -3.5667 11 1 3.4168 6.7272 -3.9253 12 6 1.3507 6.8410 -4.4498 13 7 1.5909 7.0353 -5.7282 14 14 -0.4102 6.7707 -3.8305 15 1 -0.8572 8.1358 -3.4535 16 1 -1.2908 6.2398 -4.9018 17 1 -0.4824 5.8808 -2.6439 18 6 4.1528 7.5909 -1.4060 19 6 5.5635 7.3486 -0.8656 20 6 5.9693 8.0925 0.4084 21 6 6.5579 8.5090 -0.9410 22 6 1.5097 4.0106 0.0052 23 6 1.1953 2.6661 -0.0010 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.3302 1.3902 0.0005 28 1 4.8778 3.7893 0.0019 29 1 4.0755 6.0458 0.5874 30 1 2.3473 6.4447 0.4377 31 1 1.5684 7.3176 -1.7034 32 1 1.5355 5.5590 -1.9762 33 1 0.8537 7.1417 -6.3495 34 1 4.2142 7.9565 -2.4310 35 1 3.6483 8.3316 -0.7857 36 1 5.9543 6.3410 -1.0065 37 1 5.2312 8.7541 0.8617 38 1 6.6273 7.5741 1.1059 39 1 7.6030 8.2646 -1.1313 40 1 6.2071 9.4450 -1.3758 41 1 0.7214 4.7488 0.0093 42 1 0.1618 2.3525 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174694203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:35 Heat of formation + Delta-G solvation = 36.635295 kcal Electronic energy + Delta-G solvation = -20837.961389 eV Core-core repulsion = 17909.146925 eV Total energy + Delta-G solvation = -2928.814464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.49 seconds Orbital eigenvalues (eV) -40.43479 -38.99639 -36.91571 -34.67557 -32.77412 -32.08384 -30.14021 -29.65958 -27.92994 -25.65934 -23.62370 -23.23805 -22.88432 -21.92923 -20.98683 -19.02605 -18.65582 -17.06240 -16.84625 -16.66997 -16.15599 -15.68741 -15.58287 -15.45759 -15.09598 -14.69337 -14.66736 -14.44245 -14.14249 -13.95068 -13.68551 -13.49873 -13.35801 -13.04378 -12.65798 -12.49303 -12.35188 -12.28223 -12.02426 -11.83520 -11.80420 -11.48535 -11.20677 -11.04458 -10.84146 -10.69677 -10.47120 -9.88843 -9.03012 -8.31173 -8.28386 -6.30494 0.23988 0.45454 0.60930 1.29859 1.32031 1.42376 1.48032 2.32222 2.66011 2.97969 3.04882 3.35332 3.84196 3.92832 3.99995 4.04098 4.13767 4.17621 4.23745 4.26496 4.31857 4.46699 4.51443 4.62843 4.66080 4.74276 4.82819 4.83988 4.88696 4.90050 4.99203 5.07229 5.10126 5.19012 5.28848 5.32420 5.36846 5.42888 5.55941 5.71342 5.97599 6.01397 6.40527 6.66030 6.75701 7.32366 8.88185 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.005693 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.331400 B = 4916.849295 C = 7013.777628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.144 6.144 3 C -0.099 4.099 4 C -0.109 4.109 5 C -0.084 4.084 6 C -0.079 4.079 7 C 0.093 3.907 8 N -0.530 5.530 9 C 0.173 3.827 10 C -0.510 4.510 11 H 0.038 0.962 12 C 0.009 3.991 13 N -0.948 5.948 14 Si 0.939 3.061 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.248 1.248 18 C 0.098 3.902 19 C -0.155 4.155 20 C -0.166 4.166 21 C -0.178 4.178 22 C -0.108 4.108 23 C -0.139 4.139 24 H 0.083 0.917 25 H 0.128 0.872 26 H 0.093 0.907 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.036 0.964 31 H -0.018 1.018 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.053 0.947 35 H 0.026 0.974 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -8.335 17.413 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.097 5.903 3 C -0.211 4.211 4 C -0.132 4.132 5 C -0.104 4.104 6 C -0.082 4.082 7 C -0.034 4.034 8 N -0.254 5.254 9 C 0.045 3.955 10 C -0.549 4.549 11 H 0.056 0.944 12 C -0.188 4.188 13 N -0.589 5.589 14 Si 0.763 3.237 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.172 1.172 18 C -0.030 4.030 19 C -0.174 4.174 20 C -0.202 4.202 21 C -0.216 4.216 22 C -0.128 4.128 23 C -0.163 4.163 24 H 0.102 0.898 25 H 0.147 0.853 26 H 0.112 0.888 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.119 0.881 30 H 0.054 0.946 31 H -0.001 1.001 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.210 -9.718 17.014 19.718 hybrid contribution -2.134 1.957 -0.323 2.913 sum 0.076 -7.762 16.690 18.407 Atomic orbital electron populations 1.23755 0.92122 1.08462 1.06206 1.85299 1.09516 1.02552 1.92951 1.21833 0.96912 0.96993 1.05412 1.20941 0.94609 0.96310 1.01336 1.21077 0.99724 0.91840 0.97795 1.19968 0.93322 0.95835 0.99103 1.21091 1.01267 0.91003 0.90045 1.61821 1.20202 1.30461 1.12898 1.19950 0.88126 0.94779 0.92601 1.21260 0.93656 1.47844 0.92099 0.94407 1.25796 1.03658 0.94605 0.94788 1.70051 1.33415 1.51636 1.03782 0.85827 0.79500 0.79423 0.78962 1.19249 1.20774 1.17164 1.21491 0.92109 0.89668 0.99731 1.22194 0.94673 0.97728 1.02808 1.23119 1.03516 1.03073 0.90524 1.22999 0.98876 0.98576 1.01132 1.21115 0.96404 0.95827 0.99477 1.21266 0.98968 0.92761 1.03276 0.89818 0.85325 0.88783 0.84275 0.84261 0.88140 0.94623 1.00067 0.94941 0.92558 0.92859 0.95550 0.87737 0.88856 0.87090 0.87562 0.89441 0.86287 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.15 113.37 1.04 -1.16 16 2 S -0.14 -3.33 22.57 -56.49 -1.27 -4.60 16 3 C -0.10 -2.78 6.11 22.62 0.14 -2.64 16 4 C -0.11 -3.04 9.79 22.41 0.22 -2.82 16 5 C -0.08 -2.46 9.71 22.25 0.22 -2.25 16 6 C -0.08 -2.55 5.04 -19.83 -0.10 -2.65 16 7 C 0.09 3.01 4.99 85.56 0.43 3.44 16 8 N -0.53 -21.53 4.42 -905.34 -4.00 -25.53 16 9 C 0.17 8.30 3.62 85.56 0.31 8.61 16 10 C -0.51 -29.82 8.93 25.60 0.23 -29.59 16 11 H 0.04 2.47 7.42 -2.91 -0.02 2.45 16 12 C 0.01 0.51 5.47 84.65 0.46 0.97 16 13 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 14 Si 0.94 44.43 27.47 68.60 1.88 46.31 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 17 H -0.25 -10.87 6.53 99.48 0.65 -10.22 16 18 C 0.10 3.68 5.09 86.30 0.44 4.12 16 19 C -0.16 -4.55 4.65 -10.79 -0.05 -4.60 16 20 C -0.17 -3.65 9.99 30.60 0.31 -3.35 16 21 C -0.18 -4.39 10.25 30.59 0.31 -4.08 16 22 C -0.11 -3.43 8.35 22.25 0.19 -3.24 16 23 C -0.14 -3.99 9.36 22.41 0.21 -3.78 16 24 H 0.08 1.41 7.75 -2.39 -0.02 1.39 16 25 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 1.33 7.75 -2.39 -0.02 1.31 16 27 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 29 H 0.10 2.76 6.66 -2.39 -0.02 2.75 16 30 H 0.04 1.13 7.91 -2.39 -0.02 1.11 16 31 H -0.02 -0.87 7.56 -2.38 -0.02 -0.89 16 32 H 0.03 1.58 5.29 -2.39 -0.01 1.57 16 33 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.05 2.42 6.65 -2.39 -0.02 2.41 16 35 H 0.03 0.94 7.85 -2.39 -0.02 0.93 16 36 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.09 2.00 8.03 -2.39 -0.02 1.99 16 38 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.12 3.69 7.97 -2.91 -0.02 3.67 16 42 H 0.14 3.26 5.88 -2.91 -0.02 3.24 16 Total: -1.00 -68.09 351.51 2.18 -65.90 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.93 Total: 20.64 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 4.34 Total: -43.02 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.70 Total: -85.22 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.27 Total: -4.60 kcal Total: -68.09 2.18 -65.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174694203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.540 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.49 seconds