Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47230 * 2 1 4 4 C 1.36083 * 126.34888 * 270.01711 * 3 2 1 5 5 C 1.50700 * 124.95332 * 0.02562 * 4 3 2 6 6 N 1.46897 * 109.47049 * 269.96760 * 5 4 3 7 7 C 1.46910 * 110.99893 * 66.04578 * 6 5 4 8 8 C 1.46897 * 111.00202 * 190.00020 * 6 5 4 9 9 C 1.50703 * 109.47139 * 170.00285 * 8 6 5 10 10 H 1.07998 * 119.99876 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99899 * 180.02562 * 9 8 6 12 12 N 1.31519 * 120.00342 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00014 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47221 * 89.99597 * 13 11 9 15 15 H 1.48503 * 109.46838 * 209.99606 * 13 11 9 16 16 H 1.48500 * 109.46644 * 329.99529 * 13 11 9 17 17 N 1.30077 * 110.08965 * 179.97438 * 4 3 2 18 18 C 1.35816 * 109.63716 * 0.02562 * 17 4 3 19 19 C 1.38079 * 126.34634 * 90.02461 * 3 2 1 20 20 C 1.38833 * 134.04242 * 359.97438 * 19 3 2 21 21 C 1.37844 * 119.87525 * 180.02562 * 20 19 3 22 22 C 1.38745 * 120.47685 * 0.02562 * 21 20 19 23 23 C 1.37834 * 120.49809 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.13794 * 179.97438 * 23 22 21 25 25 H 1.08995 * 109.47325 * 300.00292 * 1 2 3 26 26 H 1.09000 * 109.46910 * 60.00159 * 1 2 3 27 27 H 1.08997 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47099 * 239.99805 * 2 1 3 29 29 H 1.09006 * 109.46627 * 120.00168 * 2 1 3 30 30 H 1.09003 * 109.47532 * 29.96877 * 5 4 3 31 31 H 1.08997 * 109.47092 * 149.96829 * 5 4 3 32 32 H 1.08999 * 109.46606 * 60.00469 * 7 6 5 33 33 H 1.08998 * 109.46717 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.46819 * 299.99997 * 7 6 5 35 35 H 1.08996 * 109.47180 * 289.99851 * 8 6 5 36 36 H 1.08992 * 109.47294 * 50.00223 * 8 6 5 37 37 H 0.96997 * 120.00397 * 179.97438 * 12 11 9 38 38 H 1.08004 * 120.05843 * 0.02661 * 20 19 3 39 39 H 1.08004 * 119.76292 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.75388 * 179.72310 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2869 2.1417 -1.0960 5 6 2.1249 1.6865 -2.5235 6 7 3.3781 1.0772 -2.9883 7 6 3.6634 -0.1640 -2.2559 8 6 3.3411 0.8369 -4.4370 9 6 4.7151 0.4453 -4.9166 10 1 5.5340 0.3817 -4.2154 11 6 4.9269 0.1693 -6.2507 12 7 3.9298 0.2472 -7.1048 13 14 6.6301 -0.3155 -6.8453 14 1 6.7786 -1.7912 -6.7721 15 1 6.8096 0.1310 -8.2502 16 1 7.6561 0.3285 -5.9863 17 7 2.7028 3.3192 -0.7318 18 6 2.7300 3.3944 0.6239 19 6 2.2916 2.1525 1.1122 20 6 2.2145 1.9339 2.4810 21 6 2.5691 2.9369 3.3575 22 6 3.0030 4.1661 2.8822 23 6 3.0862 4.4021 1.5267 24 9 3.5092 5.6018 1.0719 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3207 0.9531 -2.5821 31 1 1.8821 2.5429 -3.1526 32 1 2.8507 -0.8732 -2.4128 33 1 4.5962 -0.5944 -2.6201 34 1 3.7547 0.0548 -1.1921 35 1 2.6378 0.0331 -4.6542 36 1 3.0233 1.7457 -4.9480 37 1 4.0788 0.0533 -8.0434 38 1 1.8772 0.9798 2.8583 39 1 2.5088 2.7648 4.4221 40 1 3.2736 4.9452 3.5794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177191323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = 35.772708 kcal Electronic energy + Delta-G solvation = -23139.133965 eV Core-core repulsion = 19676.361671 eV Total energy + Delta-G solvation = -3462.772294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.70615 -42.20514 -37.69544 -36.33193 -35.07426 -32.65818 -31.02631 -30.11824 -29.28061 -27.54220 -27.10313 -24.41916 -23.97056 -22.40577 -21.93741 -20.84812 -19.54781 -17.76219 -17.51857 -16.46142 -16.14350 -15.98629 -15.57718 -15.24064 -14.98854 -14.70297 -14.38538 -14.26826 -13.86512 -13.68658 -13.25879 -12.96525 -12.59252 -12.35620 -12.11339 -12.08322 -11.76336 -11.68522 -11.53735 -11.51413 -11.12839 -10.86592 -10.73975 -10.56418 -10.24898 -9.98391 -9.88411 -9.32628 -8.50965 -8.41014 -7.95965 -7.45342 -6.08241 -4.09798 0.79608 1.32070 2.52428 2.78761 3.29425 3.36403 3.41631 3.66437 4.04875 4.23969 4.38690 4.44591 4.53603 4.76038 4.82158 4.94887 4.98518 5.01603 5.16885 5.27152 5.28915 5.37852 5.45902 5.57888 5.66186 5.79801 5.83626 5.91739 5.96821 6.03867 6.18320 6.32336 6.38446 6.52810 6.77846 7.09570 7.13808 7.16956 7.68717 7.91267 8.01429 8.04202 8.40014 8.96791 9.54668 11.02601 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.003939 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.882310 B = 7106.109656 C = 7830.990895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 N -0.485 5.485 4 C 0.317 3.683 5 C 0.126 3.874 6 N -0.529 5.529 7 C 0.030 3.970 8 C 0.195 3.805 9 C -0.509 4.509 10 H 0.064 0.936 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.272 1.272 17 N -0.471 5.471 18 C 0.015 3.985 19 C 0.072 3.928 20 C -0.120 4.120 21 C -0.084 4.084 22 C -0.171 4.171 23 C 0.153 3.847 24 F -0.130 7.130 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.108 0.892 32 H 0.016 0.984 33 H 0.082 0.918 34 H 0.042 0.958 35 H -0.005 1.005 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 -0.288 20.117 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.029 4.029 3 N -0.175 5.175 4 C 0.051 3.949 5 C -0.004 4.004 6 N -0.254 5.254 7 C -0.119 4.119 8 C 0.070 3.930 9 C -0.547 4.547 10 H 0.082 0.918 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 N -0.190 5.190 18 C -0.105 4.105 19 C -0.039 4.039 20 C -0.141 4.141 21 C -0.104 4.104 22 C -0.192 4.192 23 C 0.132 3.868 24 F -0.109 7.109 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.034 0.966 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.013 0.987 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.154 0.846 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.192 0.598 19.418 20.716 hybrid contribution 0.101 -1.312 -0.141 1.323 sum -7.091 -0.714 19.277 20.552 Atomic orbital electron populations 1.22179 0.94184 1.03208 1.03194 1.22108 0.95633 0.79677 1.05514 1.45558 1.54173 1.12963 1.04787 1.23875 0.94353 0.85887 0.90757 1.20653 0.93298 1.00547 0.85909 1.62091 1.28992 1.25735 1.08620 1.22473 1.01685 0.90967 0.96747 1.19796 0.97640 0.96310 0.79208 1.21105 0.94741 1.45728 0.93173 0.91788 1.24965 0.97201 0.95616 0.96652 1.69946 1.31087 1.49417 1.03265 0.86481 0.84292 0.78539 0.78048 1.20749 1.21160 1.19700 1.70549 1.20666 1.18638 1.09105 1.18965 1.06603 0.93617 0.91323 1.18591 1.03774 0.92075 0.89427 1.19915 1.05141 1.00446 0.88605 1.20585 0.98712 0.91749 0.99359 1.20782 1.06404 0.99532 0.92529 1.16821 0.99378 0.79865 0.90716 1.91499 1.87111 1.42414 1.89833 0.91984 0.91621 0.90382 0.87565 0.89160 0.93531 0.87421 0.96614 0.89911 0.93896 0.98696 0.94588 0.92819 0.85755 0.84589 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.09 0.96 5.67 -4.04 -0.02 0.94 16 3 N -0.49 -6.88 2.41 -111.16 -0.27 -7.15 16 4 C 0.32 5.52 6.51 -154.81 -1.01 4.51 16 5 C 0.13 2.24 5.17 -4.98 -0.03 2.22 16 6 N -0.53 -11.19 4.74 -245.83 -1.17 -12.36 16 7 C 0.03 0.54 7.78 60.07 0.47 1.01 16 8 C 0.19 4.88 4.72 -4.98 -0.02 4.86 16 9 C -0.51 -14.02 8.46 -34.44 -0.29 -14.31 16 10 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 13 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 N -0.47 -9.26 11.27 -8.19 -0.09 -9.35 16 18 C 0.01 0.26 7.21 -84.64 -0.61 -0.35 16 19 C 0.07 1.03 6.87 -83.99 -0.58 0.46 16 20 C -0.12 -1.30 10.04 -39.51 -0.40 -1.69 16 21 C -0.08 -0.80 10.02 -39.54 -0.40 -1.20 16 22 C -0.17 -1.93 9.99 -39.54 -0.40 -2.33 16 23 C 0.15 2.35 7.34 -39.10 -0.29 2.06 16 24 F -0.13 -2.16 17.27 2.25 0.04 -2.12 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.11 1.18 4.36 -51.93 -0.23 0.95 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.72 7.63 -51.93 -0.40 0.33 16 31 H 0.11 1.97 7.93 -51.93 -0.41 1.55 16 32 H 0.02 0.26 7.01 -51.93 -0.36 -0.10 16 33 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 34 H 0.04 0.71 5.84 -51.93 -0.30 0.41 16 35 H 0.00 -0.12 8.12 -51.93 -0.42 -0.54 16 36 H 0.04 0.97 7.93 -51.93 -0.41 0.55 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 39 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -32.33 333.10 -9.39 -41.72 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -5.35 Total: -3.41 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.28 Total: -3.41 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.79 Total: -54.21 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.33 -9.39 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.493 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds