Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47230 * 2 1 4 4 C 1.36083 * 126.34888 * 270.01711 * 3 2 1 5 5 C 1.50700 * 124.95332 * 0.02562 * 4 3 2 6 6 N 1.46897 * 109.47049 * 269.96760 * 5 4 3 7 7 C 1.46910 * 110.99893 * 66.04578 * 6 5 4 8 8 C 1.46897 * 111.00202 * 190.00020 * 6 5 4 9 9 C 1.50703 * 109.47139 * 170.00285 * 8 6 5 10 10 H 1.07998 * 119.99876 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99899 * 180.02562 * 9 8 6 12 12 N 1.31519 * 120.00342 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00014 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47221 * 89.99597 * 13 11 9 15 15 H 1.48503 * 109.46838 * 209.99606 * 13 11 9 16 16 H 1.48500 * 109.46644 * 329.99529 * 13 11 9 17 17 N 1.30077 * 110.08965 * 179.97438 * 4 3 2 18 18 C 1.35816 * 109.63716 * 0.02562 * 17 4 3 19 19 C 1.38079 * 126.34634 * 90.02461 * 3 2 1 20 20 C 1.38833 * 134.04242 * 359.97438 * 19 3 2 21 21 C 1.37844 * 119.87525 * 180.02562 * 20 19 3 22 22 C 1.38745 * 120.47685 * 0.02562 * 21 20 19 23 23 C 1.37834 * 120.49809 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.13794 * 179.97438 * 23 22 21 25 25 H 1.08995 * 109.47325 * 300.00292 * 1 2 3 26 26 H 1.09000 * 109.46910 * 60.00159 * 1 2 3 27 27 H 1.08997 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47099 * 239.99805 * 2 1 3 29 29 H 1.09006 * 109.46627 * 120.00168 * 2 1 3 30 30 H 1.09003 * 109.47532 * 29.96877 * 5 4 3 31 31 H 1.08997 * 109.47092 * 149.96829 * 5 4 3 32 32 H 1.08999 * 109.46606 * 60.00469 * 7 6 5 33 33 H 1.08998 * 109.46717 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.46819 * 299.99997 * 7 6 5 35 35 H 1.08996 * 109.47180 * 289.99851 * 8 6 5 36 36 H 1.08992 * 109.47294 * 50.00223 * 8 6 5 37 37 H 0.96997 * 120.00397 * 179.97438 * 12 11 9 38 38 H 1.08004 * 120.05843 * 0.02661 * 20 19 3 39 39 H 1.08004 * 119.76292 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.75388 * 179.72310 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2869 2.1417 -1.0960 5 6 2.1249 1.6865 -2.5235 6 7 3.3781 1.0772 -2.9883 7 6 3.6634 -0.1640 -2.2559 8 6 3.3411 0.8369 -4.4370 9 6 4.7151 0.4453 -4.9166 10 1 5.5340 0.3817 -4.2154 11 6 4.9269 0.1693 -6.2507 12 7 3.9298 0.2472 -7.1048 13 14 6.6301 -0.3155 -6.8453 14 1 6.7786 -1.7912 -6.7721 15 1 6.8096 0.1310 -8.2502 16 1 7.6561 0.3285 -5.9863 17 7 2.7028 3.3192 -0.7318 18 6 2.7300 3.3944 0.6239 19 6 2.2916 2.1525 1.1122 20 6 2.2145 1.9339 2.4810 21 6 2.5691 2.9369 3.3575 22 6 3.0030 4.1661 2.8822 23 6 3.0862 4.4021 1.5267 24 9 3.5092 5.6018 1.0719 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3207 0.9531 -2.5821 31 1 1.8821 2.5429 -3.1526 32 1 2.8507 -0.8732 -2.4128 33 1 4.5962 -0.5944 -2.6201 34 1 3.7547 0.0548 -1.1921 35 1 2.6378 0.0331 -4.6542 36 1 3.0233 1.7457 -4.9480 37 1 4.0788 0.0533 -8.0434 38 1 1.8772 0.9798 2.8583 39 1 2.5088 2.7648 4.4221 40 1 3.2736 4.9452 3.5794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177191323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = 15.247802 kcal Electronic energy + Delta-G solvation = -23140.023991 eV Core-core repulsion = 19676.361671 eV Total energy + Delta-G solvation = -3463.662320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.84950 -43.30882 -38.91522 -37.72230 -36.06600 -34.72836 -31.97632 -31.37843 -30.22106 -29.30910 -28.51369 -26.12240 -24.87932 -23.40078 -23.29369 -22.35041 -20.74943 -18.83852 -18.70362 -18.30684 -17.34884 -17.11796 -16.75592 -16.54048 -16.36435 -16.04303 -15.82970 -15.46899 -15.21969 -14.90349 -14.37225 -14.00610 -13.86817 -13.72635 -13.50762 -13.23867 -13.07713 -12.81960 -12.79234 -12.66372 -12.62582 -12.41333 -12.37929 -12.04249 -11.94525 -11.38422 -11.30705 -11.07839 -10.62905 -9.47532 -9.12168 -8.99917 -8.22084 -6.31652 -0.22609 0.37063 1.40021 1.42443 1.49989 1.53829 1.63125 2.39743 2.66219 2.92574 3.10948 3.20080 3.32336 3.51682 3.65719 3.94859 4.02959 4.06205 4.13807 4.25752 4.29908 4.34774 4.42255 4.47465 4.58068 4.70875 4.77495 4.81443 4.95247 5.10241 5.13387 5.16238 5.22093 5.28537 5.31700 5.41209 5.60333 5.85594 5.97215 6.07866 6.19875 6.46813 6.81842 6.83667 7.37595 8.88742 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.003939 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.882310 B = 7106.109656 C = 7830.990895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 N -0.477 5.477 4 C 0.300 3.700 5 C 0.134 3.866 6 N -0.548 5.548 7 C 0.038 3.962 8 C 0.211 3.789 9 C -0.525 4.525 10 H 0.058 0.942 11 C 0.007 3.993 12 N -0.930 5.930 13 Si 0.966 3.034 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.271 1.271 17 N -0.523 5.523 18 C -0.030 4.030 19 C 0.066 3.934 20 C -0.112 4.112 21 C -0.067 4.067 22 C -0.152 4.152 23 C 0.109 3.891 24 F -0.151 7.151 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.061 0.939 35 H -0.019 1.019 36 H 0.006 0.994 37 H 0.266 0.734 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.823 -2.164 23.618 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.035 4.035 3 N -0.166 5.166 4 C 0.034 3.966 5 C 0.004 3.996 6 N -0.273 5.273 7 C -0.109 4.109 8 C 0.086 3.914 9 C -0.564 4.564 10 H 0.077 0.923 11 C -0.191 4.191 12 N -0.571 5.571 13 Si 0.791 3.209 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.196 1.196 17 N -0.243 5.243 18 C -0.149 4.149 19 C -0.044 4.044 20 C -0.132 4.132 21 C -0.086 4.086 22 C -0.173 4.173 23 C 0.088 3.912 24 F -0.129 7.129 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.080 0.920 35 H -0.001 1.001 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.181 0.819 39 H 0.204 0.796 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.298 -1.303 22.951 24.119 hybrid contribution 0.075 -0.691 -1.047 1.257 sum -7.223 -1.994 21.904 23.150 Atomic orbital electron populations 1.22150 0.92706 1.04653 1.02592 1.22430 0.96845 0.77733 1.06517 1.45654 1.53364 1.13827 1.03779 1.23405 0.95924 0.86320 0.90976 1.20482 0.92471 1.00137 0.86504 1.61897 1.31394 1.27402 1.06629 1.22404 1.01312 0.90098 0.97135 1.19401 0.96187 0.94126 0.81698 1.21394 0.95577 1.45849 0.93556 0.92334 1.25820 1.01128 0.95434 0.96757 1.70059 1.33177 1.50195 1.03638 0.85427 0.79351 0.78743 0.77368 1.19344 1.20723 1.19582 1.70387 1.22129 1.20348 1.11439 1.19413 1.08867 0.95904 0.90735 1.19002 1.03713 0.90935 0.90772 1.20467 1.03624 1.02407 0.86732 1.21222 0.95755 0.90043 1.01592 1.21268 1.03966 1.01125 0.90950 1.17398 1.02047 0.79434 0.92292 1.91433 1.87722 1.43480 1.90308 0.91433 0.93393 0.87831 0.88517 0.86095 0.91218 0.89220 0.94590 0.91952 0.92037 1.00125 0.97542 0.92558 0.81876 0.79599 0.81501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 10.24 71.98 0.74 -1.63 16 2 C 0.08 1.54 5.67 86.38 0.49 2.03 16 3 N -0.48 -13.01 2.41 -505.60 -1.22 -14.23 16 4 C 0.30 10.78 6.51 137.92 0.90 11.68 16 5 C 0.13 5.00 5.17 85.56 0.44 5.44 16 6 N -0.55 -24.08 4.74 -931.66 -4.42 -28.50 16 7 C 0.04 1.41 7.78 127.69 0.99 2.40 16 8 C 0.21 11.11 4.72 85.56 0.40 11.51 16 9 C -0.53 -29.79 8.46 25.60 0.22 -29.57 16 10 H 0.06 3.31 7.12 -2.91 -0.02 3.29 16 11 C 0.01 0.40 5.46 84.65 0.46 0.87 16 12 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 13 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 N -0.52 -21.70 11.27 -179.84 -2.03 -23.73 16 18 C -0.03 -1.06 7.21 39.47 0.28 -0.77 16 19 C 0.07 1.79 6.87 38.84 0.27 2.06 16 20 C -0.11 -1.90 10.04 22.32 0.22 -1.68 16 21 C -0.07 -0.92 10.02 22.30 0.22 -0.70 16 22 C -0.15 -2.99 9.99 22.30 0.22 -2.77 16 23 C 0.11 3.36 7.34 22.58 0.17 3.53 16 24 F -0.15 -5.26 17.27 44.97 0.78 -4.48 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 1.95 4.36 -2.38 -0.01 1.94 16 29 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.07 2.22 7.63 -2.39 -0.02 2.20 16 31 H 0.09 3.59 7.93 -2.39 -0.02 3.57 16 32 H 0.04 1.16 7.01 -2.39 -0.02 1.15 16 33 H 0.06 2.53 6.76 -2.39 -0.02 2.51 16 34 H 0.06 2.01 5.84 -2.39 -0.01 1.99 16 35 H -0.02 -1.03 8.12 -2.39 -0.02 -1.04 16 36 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 37 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.19 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -75.46 333.10 2.50 -72.96 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.05 Total: 4.16 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 6.03 Total: 2.38 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -7.38 Total: -121.43 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -75.46 2.50 -72.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.203 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds