Wall clock time and date at job start Tue Mar 31 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 113.38304 * 2 1 4 4 C 1.53513 * 114.16824 * 226.91948 * 2 1 3 5 5 N 1.47480 * 87.93156 * 272.37969 * 4 2 1 6 6 C 1.46906 * 110.99490 * 221.29772 * 5 4 2 7 7 C 1.53003 * 109.46720 * 175.28015 * 6 5 4 8 8 C 1.53001 * 109.47031 * 174.93136 * 7 6 5 9 9 S 1.80996 * 109.47265 * 179.97438 * 8 7 6 10 10 C 1.76194 * 100.00392 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99867 * 359.97438 * 10 9 8 12 12 C 1.38802 * 120.00393 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99793 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99750 * 0.02562 * 12 10 9 15 15 H 1.48512 * 109.46868 * 269.99675 * 14 12 10 16 16 H 1.48495 * 109.47295 * 29.99564 * 14 12 10 17 17 H 1.48499 * 109.47298 * 149.99923 * 14 12 10 18 18 C 1.47471 * 87.83597 * 332.99007 * 5 4 2 19 19 H 1.09003 * 113.47878 * 272.24482 * 18 5 4 20 20 C 1.50701 * 113.47527 * 141.77911 * 18 5 4 21 21 C 1.38239 * 119.99958 * 339.23248 * 20 18 5 22 22 C 1.38231 * 119.99647 * 179.74417 * 21 20 18 23 23 C 1.38236 * 120.00235 * 0.55268 * 22 21 20 24 24 C 1.38229 * 119.99905 * 359.69965 * 23 22 21 25 25 C 1.38233 * 120.00415 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47287 * 173.57128 * 1 2 3 27 27 H 1.08994 * 109.47306 * 293.57521 * 1 2 3 28 28 H 1.09003 * 109.47212 * 53.57518 * 1 2 3 29 29 H 1.09007 * 113.47565 * 157.61094 * 4 2 1 30 30 H 1.09004 * 113.47893 * 27.14876 * 4 2 1 31 31 H 1.08994 * 109.47214 * 55.27924 * 6 5 4 32 32 H 1.09000 * 109.47186 * 295.27829 * 6 5 4 33 33 H 1.08997 * 109.47072 * 54.92878 * 7 6 5 34 34 H 1.08999 * 109.46960 * 294.93071 * 7 6 5 35 35 H 1.08997 * 109.47403 * 59.99945 * 8 7 6 36 36 H 1.08999 * 109.47196 * 299.99790 * 8 7 6 37 37 H 0.97006 * 119.99707 * 180.02562 * 13 12 10 38 38 H 1.07993 * 119.99575 * 359.97438 * 21 20 18 39 39 H 1.08003 * 120.00000 * 180.27522 * 22 21 20 40 40 H 1.08001 * 119.99998 * 179.72442 * 23 22 21 41 41 H 1.07999 * 119.99693 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.00273 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9626 1.0004 0.0000 4 6 2.1585 -0.9566 -1.0230 5 7 2.0809 -2.0161 0.0000 6 6 3.2985 -2.8381 -0.0001 7 6 3.2321 -3.8478 1.1475 8 6 4.4385 -4.7859 1.0718 9 16 4.3604 -5.9800 2.4297 10 6 5.8243 -6.9060 2.1075 11 1 6.4508 -6.6502 1.2657 12 6 6.1725 -7.9643 2.9354 13 7 7.2664 -8.6557 2.6949 14 14 5.0886 -8.4072 4.3909 15 1 5.5333 -7.6491 5.5880 16 1 3.6782 -8.0608 4.0813 17 1 5.1928 -9.8638 4.6606 18 6 2.1585 -0.9567 1.0229 19 1 3.1797 -0.6906 1.2959 20 6 1.2821 -1.2141 2.2215 21 6 0.2140 -2.0860 2.1223 22 6 -0.5867 -2.3262 3.2232 23 6 -0.3261 -1.6858 4.4203 24 6 0.7389 -0.8100 4.5181 25 6 1.5430 -0.5741 3.4188 26 1 -0.3634 -1.0212 -0.1151 27 1 -0.3633 0.4110 0.9418 28 1 -0.3634 0.6102 -0.8269 29 1 3.1798 -0.6905 -1.2960 30 1 1.5247 -1.1428 -1.8900 31 1 4.1699 -2.1965 0.1304 32 1 3.3777 -3.3701 -0.9481 33 1 2.3139 -4.4295 1.0670 34 1 3.2438 -3.3171 2.0995 35 1 5.3567 -4.2042 1.1523 36 1 4.4269 -5.3166 0.1198 37 1 7.5095 -9.3956 3.2733 38 1 0.0073 -2.5822 1.1857 39 1 -1.4185 -3.0107 3.1470 40 1 -0.9544 -1.8701 5.2792 41 1 0.9427 -0.3101 5.4535 42 1 2.3748 0.1105 3.4951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177830583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:28 Heat of formation + Delta-G solvation = 44.444215 kcal Electronic energy + Delta-G solvation = -20688.621955 eV Core-core repulsion = 17760.146111 eV Total energy + Delta-G solvation = -2928.475844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06586 -38.47981 -34.41407 -32.41662 -31.51290 -30.92520 -30.59515 -26.92808 -25.81753 -25.61925 -23.69774 -22.39154 -21.68419 -20.93805 -18.93274 -17.44929 -16.94508 -16.43981 -15.63774 -15.29474 -14.95885 -14.66927 -14.61513 -14.15018 -13.95207 -13.50221 -13.21487 -12.93597 -12.82519 -12.56120 -12.50754 -12.40688 -11.87963 -11.75803 -11.41210 -11.19704 -11.06344 -11.01513 -10.95849 -10.81583 -10.54910 -10.32307 -10.05196 -9.73225 -9.00594 -8.98188 -8.82868 -8.60705 -8.52017 -6.90699 -6.26432 -3.97945 1.37688 1.48640 3.03384 3.31969 3.48191 3.57629 3.72778 3.95471 4.21331 4.34105 4.64043 4.79942 4.85481 4.91923 4.96616 5.04818 5.06131 5.12592 5.19130 5.21872 5.29005 5.31762 5.45670 5.57100 5.65443 5.66808 5.69904 5.73537 5.80312 5.84738 5.99020 6.02537 6.07737 6.14663 6.21157 6.32536 6.50975 6.53547 6.59123 6.64898 6.74145 7.03834 7.06689 7.97451 8.45959 9.19865 10.83163 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.004039 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.629051 B = 6930.911364 C = 8073.328287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 H 0.081 0.919 4 C -0.001 4.001 5 N -0.460 5.460 6 C 0.025 3.975 7 C -0.091 4.091 8 C -0.082 4.082 9 S -0.213 6.213 10 C -0.502 4.502 11 H 0.087 0.913 12 C 0.092 3.908 13 N -0.883 5.883 14 Si 0.861 3.139 15 H -0.269 1.269 16 H -0.237 1.237 17 H -0.276 1.276 18 C 0.068 3.932 19 H 0.085 0.915 20 C -0.064 4.064 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.117 4.117 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.270 0.730 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.081 19.746 -3.219 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 H 0.100 0.900 4 C -0.130 4.130 5 N -0.182 5.182 6 C -0.105 4.105 7 C -0.130 4.130 8 C -0.231 4.231 9 S 0.015 5.985 10 C -0.650 4.650 11 H 0.105 0.895 12 C -0.116 4.116 13 N -0.520 5.520 14 Si 0.686 3.314 15 H -0.194 1.194 16 H -0.161 1.161 17 H -0.201 1.201 18 C -0.042 4.042 19 H 0.102 0.898 20 C -0.064 4.064 21 C -0.105 4.105 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.135 4.135 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.239 18.933 -2.359 25.054 hybrid contribution 1.706 0.103 -0.205 1.721 sum -14.533 19.036 -2.564 24.086 Atomic orbital electron populations 1.21531 0.92771 1.02741 1.01373 1.22617 0.97195 0.97507 0.95379 0.90029 1.23811 1.00483 0.91996 0.96715 1.68855 1.34863 1.11285 1.03210 1.22722 0.90829 0.96503 1.00455 1.21207 0.98275 0.95994 0.97535 1.23020 0.99732 0.99042 1.01275 1.84194 1.37302 1.37815 1.39237 1.22145 1.07226 1.17829 1.17783 0.89503 1.24785 0.94780 0.94687 0.97346 1.69943 1.23408 1.20025 1.38624 0.86679 0.83286 0.78400 0.83055 1.19393 1.16134 1.20099 1.22405 0.97943 0.92423 0.91409 0.89751 1.19447 0.96096 0.97348 0.93521 1.21086 0.93850 0.96651 0.98873 1.21183 1.00060 0.99833 0.93273 1.21117 0.97925 0.97375 0.97718 1.21031 0.95805 0.99087 0.98271 1.20948 0.99681 1.00217 0.92661 0.91235 0.92314 0.92788 0.91338 0.89502 0.94045 0.90425 0.90805 0.91737 0.91783 0.91465 0.92014 0.85032 0.86347 0.86540 0.86440 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.22 37.16 0.31 -0.77 16 2 C -0.11 -0.94 4.67 -90.09 -0.42 -1.36 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C 0.00 -0.01 7.28 -7.55 -0.05 -0.07 16 5 N -0.46 -5.29 4.86 -237.90 -1.16 -6.44 16 6 C 0.02 0.32 4.75 -3.82 -0.02 0.31 16 7 C -0.09 -1.49 5.34 -26.73 -0.14 -1.63 16 8 C -0.08 -1.64 5.67 37.16 0.21 -1.43 16 9 S -0.21 -5.37 19.41 -107.50 -2.09 -7.46 16 10 C -0.50 -14.89 10.04 30.94 0.31 -14.58 16 11 H 0.09 2.73 8.03 -52.48 -0.42 2.31 16 12 C 0.09 2.74 5.50 -17.43 -0.10 2.65 16 13 N -0.88 -27.18 13.97 55.49 0.78 -26.41 16 14 Si 0.86 22.00 27.74 -169.99 -4.71 17.29 16 15 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.07 0.73 2.87 -72.60 -0.21 0.52 16 19 H 0.08 0.92 7.62 -51.93 -0.40 0.52 16 20 C -0.06 -0.74 4.38 -104.62 -0.46 -1.20 16 21 C -0.09 -1.04 7.86 -39.58 -0.31 -1.35 16 22 C -0.13 -1.44 10.05 -39.58 -0.40 -1.83 16 23 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 24 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 25 C -0.12 -1.32 9.74 -39.58 -0.39 -1.70 16 26 H 0.07 0.66 6.46 -51.93 -0.34 0.32 16 27 H 0.06 0.52 7.70 -51.93 -0.40 0.12 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.58 7.85 -51.92 -0.41 0.18 16 30 H 0.09 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.04 0.52 7.55 -51.93 -0.39 0.13 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.11 7.88 -51.93 -0.41 0.70 16 35 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 36 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 37 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.13 1.60 6.56 -52.49 -0.34 1.26 16 39 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -31.51 350.55 -11.27 -42.78 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.91 Total: 0.91 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -2.46 Total: -25.95 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: -0.38 Total: -32.85 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -2.09 Total: -7.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.51 -11.27 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177830583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.225 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds