Wall clock time and date at job start Tue Mar 31 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 113.38304 * 2 1 4 4 C 1.53513 * 114.16824 * 226.91948 * 2 1 3 5 5 N 1.47480 * 87.93156 * 272.37969 * 4 2 1 6 6 C 1.46906 * 110.99490 * 221.29772 * 5 4 2 7 7 C 1.53003 * 109.46720 * 175.28015 * 6 5 4 8 8 C 1.53001 * 109.47031 * 174.93136 * 7 6 5 9 9 S 1.80996 * 109.47265 * 179.97438 * 8 7 6 10 10 C 1.76194 * 100.00392 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99867 * 359.97438 * 10 9 8 12 12 C 1.38802 * 120.00393 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99793 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99750 * 0.02562 * 12 10 9 15 15 H 1.48512 * 109.46868 * 269.99675 * 14 12 10 16 16 H 1.48495 * 109.47295 * 29.99564 * 14 12 10 17 17 H 1.48499 * 109.47298 * 149.99923 * 14 12 10 18 18 C 1.47471 * 87.83597 * 332.99007 * 5 4 2 19 19 H 1.09003 * 113.47878 * 272.24482 * 18 5 4 20 20 C 1.50701 * 113.47527 * 141.77911 * 18 5 4 21 21 C 1.38239 * 119.99958 * 339.23248 * 20 18 5 22 22 C 1.38231 * 119.99647 * 179.74417 * 21 20 18 23 23 C 1.38236 * 120.00235 * 0.55268 * 22 21 20 24 24 C 1.38229 * 119.99905 * 359.69965 * 23 22 21 25 25 C 1.38233 * 120.00415 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47287 * 173.57128 * 1 2 3 27 27 H 1.08994 * 109.47306 * 293.57521 * 1 2 3 28 28 H 1.09003 * 109.47212 * 53.57518 * 1 2 3 29 29 H 1.09007 * 113.47565 * 157.61094 * 4 2 1 30 30 H 1.09004 * 113.47893 * 27.14876 * 4 2 1 31 31 H 1.08994 * 109.47214 * 55.27924 * 6 5 4 32 32 H 1.09000 * 109.47186 * 295.27829 * 6 5 4 33 33 H 1.08997 * 109.47072 * 54.92878 * 7 6 5 34 34 H 1.08999 * 109.46960 * 294.93071 * 7 6 5 35 35 H 1.08997 * 109.47403 * 59.99945 * 8 7 6 36 36 H 1.08999 * 109.47196 * 299.99790 * 8 7 6 37 37 H 0.97006 * 119.99707 * 180.02562 * 13 12 10 38 38 H 1.07993 * 119.99575 * 359.97438 * 21 20 18 39 39 H 1.08003 * 120.00000 * 180.27522 * 22 21 20 40 40 H 1.08001 * 119.99998 * 179.72442 * 23 22 21 41 41 H 1.07999 * 119.99693 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.00273 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9626 1.0004 0.0000 4 6 2.1585 -0.9566 -1.0230 5 7 2.0809 -2.0161 0.0000 6 6 3.2985 -2.8381 -0.0001 7 6 3.2321 -3.8478 1.1475 8 6 4.4385 -4.7859 1.0718 9 16 4.3604 -5.9800 2.4297 10 6 5.8243 -6.9060 2.1075 11 1 6.4508 -6.6502 1.2657 12 6 6.1725 -7.9643 2.9354 13 7 7.2664 -8.6557 2.6949 14 14 5.0886 -8.4072 4.3909 15 1 5.5333 -7.6491 5.5880 16 1 3.6782 -8.0608 4.0813 17 1 5.1928 -9.8638 4.6606 18 6 2.1585 -0.9567 1.0229 19 1 3.1797 -0.6906 1.2959 20 6 1.2821 -1.2141 2.2215 21 6 0.2140 -2.0860 2.1223 22 6 -0.5867 -2.3262 3.2232 23 6 -0.3261 -1.6858 4.4203 24 6 0.7389 -0.8100 4.5181 25 6 1.5430 -0.5741 3.4188 26 1 -0.3634 -1.0212 -0.1151 27 1 -0.3633 0.4110 0.9418 28 1 -0.3634 0.6102 -0.8269 29 1 3.1798 -0.6905 -1.2960 30 1 1.5247 -1.1428 -1.8900 31 1 4.1699 -2.1965 0.1304 32 1 3.3777 -3.3701 -0.9481 33 1 2.3139 -4.4295 1.0670 34 1 3.2438 -3.3171 2.0995 35 1 5.3567 -4.2042 1.1523 36 1 4.4269 -5.3166 0.1198 37 1 7.5095 -9.3956 3.2733 38 1 0.0073 -2.5822 1.1857 39 1 -1.4185 -3.0107 3.1470 40 1 -0.9544 -1.8701 5.2792 41 1 0.9427 -0.3101 5.4535 42 1 2.3748 0.1105 3.4951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177830583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:28 Heat of formation + Delta-G solvation = 27.203380 kcal Electronic energy + Delta-G solvation = -20689.369573 eV Core-core repulsion = 17760.146111 eV Total energy + Delta-G solvation = -2929.223463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.88321 -39.30735 -35.64404 -34.70607 -32.40600 -31.78390 -31.48960 -28.17149 -27.71157 -26.59215 -24.74702 -23.33248 -22.50877 -22.12831 -19.71155 -19.61594 -17.78896 -17.40535 -17.11121 -16.60336 -16.20584 -15.99940 -15.74184 -15.34583 -14.97831 -14.92732 -14.36357 -14.11469 -13.89510 -13.71862 -13.50311 -13.45997 -13.22450 -13.08483 -12.97361 -12.67730 -12.41491 -12.10802 -12.01991 -11.82397 -11.75838 -11.69686 -11.33206 -11.18906 -11.16970 -10.57979 -9.85566 -9.68113 -9.44662 -9.01667 -8.54163 -6.25406 0.53572 0.63201 1.10133 1.29509 1.45911 1.72013 2.22949 2.66873 2.83963 2.86591 3.10713 3.44853 3.84214 3.90782 4.00384 4.05208 4.15310 4.19434 4.26259 4.35429 4.37160 4.44328 4.47796 4.60859 4.65149 4.72236 4.76716 4.79607 4.85497 5.01689 5.02440 5.08495 5.18000 5.20739 5.24848 5.27486 5.40043 5.52652 5.67658 5.68006 5.74357 5.83251 6.07453 6.15665 6.23678 6.90214 8.59104 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.004039 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.629051 B = 6930.911364 C = 8073.328287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.098 4.098 3 H 0.099 0.901 4 C 0.002 3.998 5 N -0.472 5.472 6 C 0.034 3.966 7 C -0.075 4.075 8 C -0.068 4.068 9 S -0.222 6.222 10 C -0.523 4.523 11 H 0.050 0.950 12 C 0.040 3.960 13 N -0.922 5.922 14 Si 0.924 3.076 15 H -0.261 1.261 16 H -0.232 1.232 17 H -0.260 1.260 18 C 0.062 3.938 19 H 0.085 0.915 20 C -0.072 4.072 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.131 4.131 25 C -0.129 4.129 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.277 0.723 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.411 21.200 -2.822 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.116 4.116 3 H 0.117 0.883 4 C -0.126 4.126 5 N -0.194 5.194 6 C -0.096 4.096 7 C -0.114 4.114 8 C -0.217 4.217 9 S 0.006 5.994 10 C -0.670 4.670 11 H 0.069 0.931 12 C -0.164 4.164 13 N -0.560 5.560 14 Si 0.745 3.255 15 H -0.186 1.186 16 H -0.155 1.155 17 H -0.185 1.185 18 C -0.047 4.047 19 H 0.103 0.897 20 C -0.072 4.072 21 C -0.117 4.117 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.148 4.148 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.570 20.393 -1.976 26.990 hybrid contribution 2.135 -0.273 -0.412 2.191 sum -15.435 20.121 -2.388 25.471 Atomic orbital electron populations 1.21485 0.92677 1.02212 1.01626 1.22600 0.97169 0.97924 0.93929 0.88288 1.23877 1.01340 0.90927 0.96484 1.68858 1.33743 1.12161 1.04600 1.22566 0.92134 0.96104 0.98843 1.21032 0.95817 0.95721 0.98796 1.23080 1.01619 0.98143 0.98869 1.83935 1.34669 1.38782 1.42044 1.22340 1.08822 1.18954 1.16913 0.93144 1.25740 0.96109 0.94433 1.00154 1.70035 1.25086 1.20759 1.40097 0.85738 0.81485 0.78938 0.79345 1.18592 1.15534 1.18470 1.22502 0.98025 0.92816 0.91396 0.89741 1.19606 0.96158 0.97325 0.94120 1.21115 0.94501 0.97215 0.98883 1.21422 1.00461 1.00239 0.93477 1.21399 0.98290 0.97241 0.98160 1.21341 0.95588 0.98998 0.99000 1.21203 1.00280 1.00586 0.92708 0.92461 0.92969 0.91271 0.90262 0.88780 0.93237 0.90111 0.91620 0.92438 0.91768 0.91516 0.91347 0.85703 0.85290 0.84776 0.84618 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.22 71.98 0.59 -1.27 16 2 C -0.10 -1.47 4.67 -10.45 -0.05 -1.52 16 3 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.00 0.03 7.28 83.57 0.61 0.64 16 5 N -0.47 -10.05 4.86 -906.59 -4.41 -14.46 16 6 C 0.03 0.83 4.75 86.30 0.41 1.24 16 7 C -0.07 -2.37 5.34 30.60 0.16 -2.20 16 8 C -0.07 -2.71 5.67 71.98 0.41 -2.30 16 9 S -0.22 -11.13 19.41 -56.49 -1.10 -12.23 16 10 C -0.52 -31.59 10.04 67.95 0.68 -30.91 16 11 H 0.05 3.30 8.03 -2.91 -0.02 3.28 16 12 C 0.04 2.42 5.50 84.86 0.47 2.89 16 13 N -0.92 -57.53 13.97 21.65 0.30 -57.23 16 14 Si 0.92 45.16 27.74 68.60 1.90 47.06 16 15 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.23 -11.04 6.74 99.48 0.67 -10.37 16 17 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 18 C 0.06 1.23 2.87 41.44 0.12 1.34 16 19 H 0.08 1.67 7.62 -2.39 -0.02 1.66 16 20 C -0.07 -1.59 4.38 -19.86 -0.09 -1.68 16 21 C -0.10 -2.31 7.86 22.27 0.18 -2.14 16 22 C -0.14 -3.05 10.05 22.27 0.22 -2.83 16 23 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 24 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 25 C -0.13 -2.75 9.74 22.27 0.22 -2.53 16 26 H 0.06 1.01 6.46 -2.39 -0.02 1.00 16 27 H 0.05 0.86 7.70 -2.39 -0.02 0.84 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.12 7.85 -2.38 -0.02 1.10 16 30 H 0.09 1.37 8.12 -2.38 -0.02 1.35 16 31 H 0.05 1.14 7.55 -2.39 -0.02 1.12 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 1.92 7.88 -2.39 -0.02 1.90 16 35 H 0.06 2.55 8.14 -2.40 -0.02 2.53 16 36 H 0.07 2.66 8.14 -2.40 -0.02 2.64 16 37 H 0.28 15.90 8.31 -92.70 -0.77 15.13 16 38 H 0.13 3.01 6.56 -2.91 -0.02 3.00 16 39 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -67.80 350.55 2.01 -65.79 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.93 Total: 17.29 kcal Atomic # 6 Polarization: -50.60 SS G_CDS: 4.38 Total: -46.22 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -4.10 Total: -71.69 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -11.13 SS G_CDS: -1.10 Total: -12.23 kcal Total: -67.80 2.01 -65.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177830583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.992 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds