Wall clock time and date at job start Tue Mar 31 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 113.25273 * 2 1 4 4 C 1.53507 * 114.17230 * 133.20904 * 2 1 3 5 5 N 1.47486 * 87.93167 * 139.67190 * 4 2 1 6 6 C 1.46896 * 110.99998 * 221.29602 * 5 4 2 7 7 C 1.52997 * 109.47114 * 265.97234 * 6 5 4 8 8 C 1.53006 * 109.47127 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.47089 * 179.97438 * 8 7 6 10 10 C 1.76198 * 99.99878 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00096 * 180.02562 * 10 9 8 13 13 N 1.31635 * 119.99817 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00197 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47245 * 89.99457 * 14 12 10 16 16 H 1.48495 * 109.47213 * 209.99627 * 14 12 10 17 17 H 1.48508 * 109.46928 * 329.99795 * 14 12 10 18 18 C 1.47481 * 87.83444 * 332.98853 * 5 4 2 19 19 H 1.08992 * 113.47779 * 272.24311 * 18 5 4 20 20 C 1.50699 * 113.47231 * 141.77443 * 18 5 4 21 21 C 1.38234 * 120.00358 * 339.23058 * 20 18 5 22 22 C 1.38240 * 119.99983 * 179.78554 * 21 20 18 23 23 C 1.38237 * 119.99716 * 0.46916 * 22 21 20 24 24 C 1.38233 * 119.99940 * 359.76264 * 23 22 21 25 25 C 1.38226 * 120.00453 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.46812 * 192.95241 * 1 2 3 27 27 H 1.09002 * 109.47030 * 312.94531 * 1 2 3 28 28 H 1.08994 * 109.47522 * 72.95418 * 1 2 3 29 29 H 1.08998 * 113.47729 * 24.90433 * 4 2 1 30 30 H 1.09001 * 113.48079 * 254.43858 * 4 2 1 31 31 H 1.08996 * 109.47194 * 145.97402 * 6 5 4 32 32 H 1.09001 * 109.47271 * 25.96965 * 6 5 4 33 33 H 1.09001 * 109.47502 * 60.00479 * 7 6 5 34 34 H 1.09001 * 109.47289 * 300.00275 * 7 6 5 35 35 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 36 36 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 37 37 H 0.96997 * 119.99603 * 180.02562 * 13 12 10 38 38 H 1.08001 * 120.00020 * 359.97438 * 21 20 18 39 39 H 1.07997 * 119.99550 * 180.24891 * 22 21 20 40 40 H 1.07998 * 119.99693 * 179.78903 * 23 22 21 41 41 H 1.08006 * 119.99657 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.00206 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9603 1.0015 0.0000 4 6 2.1586 -0.9589 1.0208 5 7 3.1619 -1.3058 -0.0031 6 6 3.4331 -2.7495 -0.0063 7 6 4.6447 -3.0428 0.8808 8 6 4.9276 -4.5465 0.8769 9 16 6.3614 -4.8934 1.9258 10 6 6.4576 -6.6432 1.7434 11 1 5.7435 -7.1614 1.1204 12 6 7.4504 -7.3560 2.4013 13 7 8.3205 -6.7246 3.1610 14 14 7.5529 -9.2110 2.2075 15 1 8.4271 -9.5406 1.0531 16 1 8.1197 -9.8073 3.4437 17 1 6.1934 -9.7599 1.9713 18 6 2.1585 -0.9542 -1.0252 19 1 1.5091 -1.7853 -1.3000 20 6 2.7427 -0.2492 -2.2222 21 6 3.9668 0.3850 -2.1215 22 6 4.5046 1.0279 -3.2208 23 6 3.8138 1.0448 -4.4181 24 6 2.5874 0.4146 -4.5173 25 6 2.0517 -0.2320 -3.4194 26 1 -0.3633 -1.0016 0.2304 27 1 -0.3633 0.7002 0.7523 28 1 -0.3634 0.3012 -0.9824 29 1 1.5091 -1.7912 1.2919 30 1 2.5811 -0.4530 1.8889 31 1 3.6406 -3.0779 -1.0247 32 1 2.5639 -3.2834 0.3777 33 1 4.4373 -2.7145 1.8993 34 1 5.5140 -2.5089 0.4968 35 1 4.0585 -5.0807 1.2607 36 1 5.1352 -4.8744 -0.1416 37 1 9.0145 -7.2226 3.6204 38 1 4.5044 0.3757 -1.1849 39 1 5.4628 1.5200 -3.1432 40 1 4.2324 1.5500 -5.2759 41 1 2.0479 0.4275 -5.4529 42 1 1.0934 -0.7240 -3.4969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177830590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:37 Heat of formation + Delta-G solvation = 40.751047 kcal Electronic energy + Delta-G solvation = -20049.141478 eV Core-core repulsion = 17120.505487 eV Total energy + Delta-G solvation = -2928.635992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -40.90948 -38.61425 -34.33529 -32.41019 -31.49419 -31.13854 -30.80951 -26.96586 -25.83234 -25.51602 -23.16340 -22.60643 -21.58091 -20.75563 -19.54322 -17.45438 -17.16184 -15.77830 -15.71237 -15.48599 -14.80960 -14.77817 -14.42638 -14.23504 -13.98258 -13.48762 -13.37380 -13.06430 -12.89452 -12.71907 -12.64746 -12.01250 -11.90540 -11.55393 -11.46235 -11.19084 -11.09577 -11.06618 -10.96719 -10.69458 -10.57509 -10.45423 -10.23940 -9.51213 -9.03864 -8.98800 -8.94337 -8.71740 -8.26927 -6.49910 -6.20675 -3.90550 1.25219 1.36036 3.22819 3.23252 3.30162 3.54266 3.66259 3.96485 4.20811 4.24823 4.57673 4.76967 4.84992 4.91777 5.01861 5.06508 5.10865 5.15213 5.18092 5.23463 5.39659 5.41477 5.47119 5.50793 5.53040 5.59201 5.69054 5.77079 5.82751 5.85604 5.90103 6.00371 6.09852 6.13430 6.19411 6.38930 6.42298 6.48463 6.58387 6.69956 6.80172 6.95021 7.07806 7.62420 8.38673 9.25485 10.87550 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.002888 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.197875 B = 9692.578615 C =10336.806640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.102 0.898 4 C 0.001 3.999 5 N -0.462 5.462 6 C 0.025 3.975 7 C -0.086 4.086 8 C -0.113 4.113 9 S -0.132 6.132 10 C -0.516 4.516 11 H 0.071 0.929 12 C 0.070 3.930 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.067 3.933 19 H 0.084 0.916 20 C -0.069 4.069 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.267 0.733 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.340 16.235 -11.253 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.120 0.880 4 C -0.127 4.127 5 N -0.183 5.183 6 C -0.104 4.104 7 C -0.125 4.125 8 C -0.262 4.262 9 S 0.096 5.904 10 C -0.664 4.664 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.506 5.506 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.042 4.042 19 H 0.101 0.899 20 C -0.069 4.069 21 C -0.108 4.108 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.135 4.135 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.830 17.173 -10.504 24.423 hybrid contribution -1.329 -2.667 -0.904 3.114 sum -15.159 14.507 -11.408 23.883 Atomic orbital electron populations 1.21716 0.94251 1.02008 1.02030 1.22823 0.95477 0.99011 0.95361 0.87990 1.23954 0.93681 0.98403 0.96706 1.68804 1.28827 1.17524 1.03189 1.22755 0.98714 0.87982 1.00987 1.21119 0.97059 0.94788 0.99490 1.23248 1.02644 0.97399 1.02932 1.84636 1.34361 1.10294 1.61069 1.22697 1.18258 0.91002 1.34468 0.91035 1.25017 0.94788 0.99435 0.94592 1.70029 1.15812 1.36049 1.28660 0.86170 0.78462 0.83106 0.77808 1.20267 1.20758 1.19719 1.22384 0.93237 0.97212 0.91403 0.89860 1.19596 0.95246 0.98360 0.93728 1.21158 0.94921 0.95503 0.99208 1.21224 0.99931 0.99875 0.93230 1.21139 0.95395 0.99985 0.97784 1.21046 0.96255 0.98767 0.98330 1.20957 0.99827 1.00126 0.92630 0.92548 0.92115 0.92241 0.91062 0.89435 0.91113 0.93785 0.91720 0.90957 0.92438 0.92271 0.92332 0.84744 0.86168 0.86462 0.86406 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.79 37.16 0.36 -0.67 16 2 C -0.11 -0.97 4.22 -90.09 -0.38 -1.35 16 3 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 4 C 0.00 0.01 7.28 -7.54 -0.05 -0.04 16 5 N -0.46 -5.67 5.04 -237.88 -1.20 -6.87 16 6 C 0.03 0.35 4.82 -3.83 -0.02 0.34 16 7 C -0.09 -1.47 5.54 -26.73 -0.15 -1.61 16 8 C -0.11 -2.35 5.67 37.16 0.21 -2.14 16 9 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 10 C -0.52 -15.07 9.50 30.94 0.29 -14.78 16 11 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 12 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 13 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 14 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 C 0.07 0.71 2.85 -72.58 -0.21 0.50 16 19 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16 20 C -0.07 -0.76 5.33 -104.62 -0.56 -1.32 16 21 C -0.09 -1.04 9.43 -39.58 -0.37 -1.42 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.13 -1.19 10.05 -39.59 -0.40 -1.58 16 25 C -0.12 -1.17 9.74 -39.58 -0.39 -1.55 16 26 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.71 7.21 -51.93 -0.37 0.34 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.04 0.58 7.30 -51.93 -0.38 0.20 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.13 1.65 7.37 -52.49 -0.39 1.26 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -31.53 359.55 -11.91 -43.45 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.99 Total: -0.31 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -2.55 Total: -27.00 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: -0.46 Total: -32.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.53 -11.91 -43.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177830590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.199 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds