Wall clock time and date at job start Tue Mar 31 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 113.25273 * 2 1 4 4 C 1.53507 * 114.17230 * 133.20904 * 2 1 3 5 5 N 1.47486 * 87.93167 * 139.67190 * 4 2 1 6 6 C 1.46896 * 110.99998 * 221.29602 * 5 4 2 7 7 C 1.52997 * 109.47114 * 265.97234 * 6 5 4 8 8 C 1.53006 * 109.47127 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.47089 * 179.97438 * 8 7 6 10 10 C 1.76198 * 99.99878 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00096 * 180.02562 * 10 9 8 13 13 N 1.31635 * 119.99817 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00197 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47245 * 89.99457 * 14 12 10 16 16 H 1.48495 * 109.47213 * 209.99627 * 14 12 10 17 17 H 1.48508 * 109.46928 * 329.99795 * 14 12 10 18 18 C 1.47481 * 87.83444 * 332.98853 * 5 4 2 19 19 H 1.08992 * 113.47779 * 272.24311 * 18 5 4 20 20 C 1.50699 * 113.47231 * 141.77443 * 18 5 4 21 21 C 1.38234 * 120.00358 * 339.23058 * 20 18 5 22 22 C 1.38240 * 119.99983 * 179.78554 * 21 20 18 23 23 C 1.38237 * 119.99716 * 0.46916 * 22 21 20 24 24 C 1.38233 * 119.99940 * 359.76264 * 23 22 21 25 25 C 1.38226 * 120.00453 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.46812 * 192.95241 * 1 2 3 27 27 H 1.09002 * 109.47030 * 312.94531 * 1 2 3 28 28 H 1.08994 * 109.47522 * 72.95418 * 1 2 3 29 29 H 1.08998 * 113.47729 * 24.90433 * 4 2 1 30 30 H 1.09001 * 113.48079 * 254.43858 * 4 2 1 31 31 H 1.08996 * 109.47194 * 145.97402 * 6 5 4 32 32 H 1.09001 * 109.47271 * 25.96965 * 6 5 4 33 33 H 1.09001 * 109.47502 * 60.00479 * 7 6 5 34 34 H 1.09001 * 109.47289 * 300.00275 * 7 6 5 35 35 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 36 36 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 37 37 H 0.96997 * 119.99603 * 180.02562 * 13 12 10 38 38 H 1.08001 * 120.00020 * 359.97438 * 21 20 18 39 39 H 1.07997 * 119.99550 * 180.24891 * 22 21 20 40 40 H 1.07998 * 119.99693 * 179.78903 * 23 22 21 41 41 H 1.08006 * 119.99657 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.00206 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9603 1.0015 0.0000 4 6 2.1586 -0.9589 1.0208 5 7 3.1619 -1.3058 -0.0031 6 6 3.4331 -2.7495 -0.0063 7 6 4.6447 -3.0428 0.8808 8 6 4.9276 -4.5465 0.8769 9 16 6.3614 -4.8934 1.9258 10 6 6.4576 -6.6432 1.7434 11 1 5.7435 -7.1614 1.1204 12 6 7.4504 -7.3560 2.4013 13 7 8.3205 -6.7246 3.1610 14 14 7.5529 -9.2110 2.2075 15 1 8.4271 -9.5406 1.0531 16 1 8.1197 -9.8073 3.4437 17 1 6.1934 -9.7599 1.9713 18 6 2.1585 -0.9542 -1.0252 19 1 1.5091 -1.7853 -1.3000 20 6 2.7427 -0.2492 -2.2222 21 6 3.9668 0.3850 -2.1215 22 6 4.5046 1.0279 -3.2208 23 6 3.8138 1.0448 -4.4181 24 6 2.5874 0.4146 -4.5173 25 6 2.0517 -0.2320 -3.4194 26 1 -0.3633 -1.0016 0.2304 27 1 -0.3633 0.7002 0.7523 28 1 -0.3634 0.3012 -0.9824 29 1 1.5091 -1.7912 1.2919 30 1 2.5811 -0.4530 1.8889 31 1 3.6406 -3.0779 -1.0247 32 1 2.5639 -3.2834 0.3777 33 1 4.4373 -2.7145 1.8993 34 1 5.5140 -2.5089 0.4968 35 1 4.0585 -5.0807 1.2607 36 1 5.1352 -4.8744 -0.1416 37 1 9.0145 -7.2226 3.6204 38 1 4.5044 0.3757 -1.1849 39 1 5.4628 1.5200 -3.1432 40 1 4.2324 1.5500 -5.2759 41 1 2.0479 0.4275 -5.4529 42 1 1.0934 -0.7240 -3.4969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177830590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:33 Heat of formation + Delta-G solvation = 23.980063 kcal Electronic energy + Delta-G solvation = -20049.868723 eV Core-core repulsion = 17120.505487 eV Total energy + Delta-G solvation = -2929.363236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -41.75750 -39.39256 -35.62007 -34.61524 -32.26054 -32.06504 -31.62839 -28.20869 -27.57862 -26.62819 -24.31798 -23.42367 -22.35899 -22.00919 -20.34655 -19.55836 -17.95336 -16.91248 -16.83364 -16.72213 -16.40840 -15.99576 -15.58565 -15.26718 -15.12843 -14.82743 -14.28847 -14.14391 -13.83102 -13.72812 -13.51083 -13.39641 -13.11227 -12.98162 -12.83028 -12.71425 -12.44160 -12.32839 -12.05201 -11.86611 -11.84284 -11.57402 -11.28715 -11.17150 -11.15737 -10.34396 -9.88222 -9.74250 -9.50115 -8.69083 -8.38730 -6.15647 0.48359 0.58285 1.30001 1.38482 1.47681 1.72287 2.26848 2.82728 2.95308 3.05268 3.31548 3.43354 3.78265 3.90648 3.99778 4.06963 4.13378 4.23752 4.26658 4.36770 4.37511 4.43400 4.45935 4.52979 4.69241 4.72530 4.75378 4.77149 4.82988 4.84706 4.99069 5.04830 5.15866 5.23602 5.26449 5.28245 5.37715 5.39355 5.42954 5.64143 5.70683 5.80364 6.14015 6.16529 6.19811 7.03078 8.70869 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.002888 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.197875 B = 9692.578615 C =10336.806640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.096 0.904 4 C -0.002 4.002 5 N -0.479 5.479 6 C 0.038 3.962 7 C -0.073 4.073 8 C -0.087 4.087 9 S -0.199 6.199 10 C -0.539 4.539 11 H 0.072 0.928 12 C 0.014 3.986 13 N -0.908 5.908 14 Si 0.996 3.004 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.262 1.262 18 C 0.070 3.930 19 H 0.091 0.909 20 C -0.082 4.082 21 C -0.110 4.110 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.123 4.123 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.272 0.728 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.224 15.838 -12.689 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.114 0.886 4 C -0.130 4.130 5 N -0.201 5.201 6 C -0.092 4.092 7 C -0.112 4.112 8 C -0.236 4.236 9 S 0.030 5.970 10 C -0.687 4.687 11 H 0.090 0.910 12 C -0.191 4.191 13 N -0.544 5.544 14 Si 0.817 3.183 15 H -0.193 1.193 16 H -0.198 1.198 17 H -0.186 1.186 18 C -0.040 4.040 19 H 0.109 0.891 20 C -0.082 4.082 21 C -0.129 4.129 22 C -0.155 4.155 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.141 4.141 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.722 16.796 -11.943 25.921 hybrid contribution -0.763 -2.435 -0.500 2.601 sum -16.485 14.360 -12.442 25.155 Atomic orbital electron populations 1.21693 0.92470 1.02584 1.02778 1.22723 0.96740 0.98106 0.93773 0.88571 1.24038 0.93415 0.99025 0.96569 1.68780 1.30480 1.15981 1.04847 1.22541 0.97311 0.89570 0.99788 1.20980 0.98245 0.91865 1.00107 1.23163 0.99486 0.99895 1.01098 1.84673 1.38536 1.10366 1.63457 1.23039 1.18827 0.91833 1.34959 0.90951 1.26102 0.94039 1.05098 0.93827 1.70163 1.16478 1.38333 1.29452 0.84993 0.78977 0.76062 0.78231 1.19265 1.19793 1.18638 1.22440 0.92681 0.97673 0.91162 0.89080 1.19736 0.95298 0.98665 0.94515 1.21156 0.95641 0.96929 0.99141 1.21428 1.00579 1.00004 0.93483 1.21446 0.95537 0.99856 0.98008 1.21402 0.96205 0.97870 0.99159 1.21216 1.00509 1.00132 0.92259 0.92122 0.91258 0.91534 0.90265 0.89806 0.91441 0.92631 0.92087 0.92261 0.91864 0.92228 0.91926 0.86303 0.85311 0.84370 0.83991 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.79 71.98 0.70 -0.97 16 2 C -0.09 -1.58 4.22 -10.45 -0.04 -1.62 16 3 H 0.10 1.73 8.11 -2.39 -0.02 1.71 16 4 C 0.00 -0.04 7.28 83.57 0.61 0.57 16 5 N -0.48 -11.52 5.04 -906.52 -4.57 -16.08 16 6 C 0.04 1.03 4.82 86.30 0.42 1.45 16 7 C -0.07 -2.51 5.54 30.60 0.17 -2.34 16 8 C -0.09 -3.64 5.67 71.98 0.41 -3.23 16 9 S -0.20 -10.95 21.44 -56.49 -1.21 -12.16 16 10 C -0.54 -31.84 9.50 67.95 0.65 -31.20 16 11 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 12 C 0.01 0.82 5.49 84.86 0.47 1.29 16 13 N -0.91 -55.78 13.22 21.65 0.29 -55.49 16 14 Si 1.00 44.52 29.55 68.60 2.03 46.55 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 18 C 0.07 1.37 2.85 41.44 0.12 1.49 16 19 H 0.09 1.66 7.87 -2.39 -0.02 1.64 16 20 C -0.08 -1.74 5.33 -19.86 -0.11 -1.84 16 21 C -0.11 -2.58 9.43 22.27 0.21 -2.37 16 22 C -0.14 -2.82 10.05 22.27 0.22 -2.60 16 23 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 24 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 25 C -0.12 -2.21 9.74 22.27 0.22 -2.00 16 26 H 0.06 0.70 7.90 -2.38 -0.02 0.68 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.45 7.21 -2.39 -0.02 1.43 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 32 H 0.06 1.37 7.30 -2.39 -0.02 1.35 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.12 3.06 7.37 -2.91 -0.02 3.04 16 39 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -68.51 359.55 1.98 -66.52 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.97 Total: 18.01 kcal Atomic # 6 Polarization: -51.83 SS G_CDS: 4.48 Total: -47.35 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -4.28 Total: -71.58 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: -10.95 SS G_CDS: -1.21 Total: -12.16 kcal Total: -68.51 1.98 -66.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177830590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.504 kcal (2) G-P(sol) polarization free energy of solvation -68.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds