Wall clock time and date at job start Tue Mar 31 2020 08:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00475 * 179.97438 * 11 10 9 13 13 C 1.38757 * 120.05050 * 359.97438 * 12 11 10 14 14 C 1.38117 * 119.94083 * 180.02562 * 13 12 11 15 15 C 1.38289 * 120.05891 * 359.97438 * 14 13 12 16 16 C 1.38244 * 120.11148 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.97578 * 180.02562 * 16 15 14 18 18 N 1.46906 * 109.47363 * 89.99521 * 17 16 15 19 19 C 1.46897 * 111.00014 * 179.97438 * 18 17 16 20 20 H 1.09000 * 110.43638 * 323.91382 * 19 18 17 21 21 C 1.54811 * 110.48702 * 201.21969 * 19 18 17 22 22 C 1.54998 * 102.09248 * 220.44514 * 21 19 18 23 23 O 1.44374 * 103.49034 * 37.02631 * 22 21 19 24 24 C 1.43743 * 106.97813 * 319.93748 * 23 22 21 25 25 C 1.38170 * 120.05568 * 359.76078 * 16 15 14 26 26 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 28 28 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 29 29 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 30 30 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 31 31 H 1.07995 * 120.02891 * 0.02629 * 13 12 11 32 32 H 1.08001 * 119.97229 * 180.02562 * 14 13 12 33 33 H 1.08001 * 119.94993 * 180.02562 * 15 14 13 34 34 H 1.09005 * 109.47432 * 209.99682 * 17 16 15 35 35 H 1.09001 * 109.47268 * 329.99944 * 17 16 15 36 36 H 1.00902 * 110.99641 * 56.04545 * 18 17 16 37 37 H 1.08996 * 110.91241 * 338.64631 * 21 19 18 38 38 H 1.09000 * 110.90470 * 102.25224 * 21 19 18 39 39 H 1.09000 * 110.61994 * 278.51976 * 22 21 19 40 40 H 1.09003 * 110.75067 * 155.58998 * 22 21 19 41 41 H 1.08997 * 109.87897 * 267.09418 * 24 23 22 42 42 H 1.08994 * 110.00744 * 146.00436 * 24 23 22 43 43 H 1.07999 * 120.03462 * 180.25298 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5308 -4.8996 -0.0020 12 6 2.2709 -6.0394 -0.0024 13 6 3.6566 -5.9681 -0.0028 14 6 4.4065 -7.1279 -0.0037 15 6 3.7775 -8.3595 -0.0037 16 6 2.3971 -8.4332 -0.0033 17 6 1.7148 -9.7769 -0.0026 18 7 1.4936 -10.2132 1.3826 19 6 0.8283 -11.5223 1.4223 20 1 0.1092 -11.6086 0.6077 21 6 0.1320 -11.7349 2.7885 22 6 0.4436 -13.2243 3.0835 23 8 1.7858 -13.3938 2.5793 24 6 1.8674 -12.6579 1.3472 25 6 1.6423 -7.2759 0.0021 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5575 0.8880 28 1 0.6246 -2.5563 -0.8919 29 1 2.8725 -3.6039 -0.8910 30 1 2.8713 -3.6047 0.8890 31 1 4.1483 -5.0066 -0.0024 32 1 5.4851 -7.0730 -0.0037 33 1 4.3657 -9.2653 -0.0040 34 1 0.7565 -9.6981 -0.5162 35 1 2.3437 -10.5040 -0.5164 36 1 0.9671 -9.5245 1.8989 37 1 0.5659 -11.0883 3.5512 38 1 -0.9426 -11.5711 2.7071 39 1 -0.2512 -13.8744 2.5519 40 1 0.4084 -13.4214 4.1550 41 1 1.6389 -13.3143 0.5076 42 1 2.8665 -12.2387 1.2287 43 1 0.5638 -7.3339 0.0066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178995742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:39 Heat of formation + Delta-G solvation = -68.958750 kcal Electronic energy + Delta-G solvation = -21974.595742 eV Core-core repulsion = 18598.449506 eV Total energy + Delta-G solvation = -3376.146236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.00288 -39.61419 -37.55348 -35.66302 -33.40341 -32.15752 -30.88052 -30.29950 -29.18072 -28.37307 -25.53411 -24.78994 -22.90851 -22.30431 -21.63623 -21.11305 -20.16158 -17.72101 -17.13828 -16.54742 -16.24866 -15.76945 -15.63460 -15.48905 -15.34413 -15.05435 -14.61469 -14.40810 -14.31595 -13.42520 -13.10866 -12.95035 -12.68569 -12.41767 -12.30132 -12.13996 -11.82684 -11.75128 -11.37205 -11.34611 -11.33001 -11.21578 -10.90484 -10.70912 -10.47424 -10.00264 -9.88225 -9.68086 -9.30858 -8.91864 -8.65638 -8.47435 -7.85964 -6.12720 -4.17310 1.39991 1.67435 3.24993 3.32124 3.35738 3.58705 3.67946 3.81383 4.05043 4.14995 4.39039 4.54728 4.70605 4.74048 4.81716 4.89272 5.01681 5.16392 5.23778 5.23873 5.29475 5.33103 5.36367 5.41590 5.47787 5.59137 5.61081 5.63938 5.79607 6.01207 6.04215 6.15075 6.48384 6.52139 6.54149 6.64881 6.70300 6.71803 6.95878 7.02775 7.48274 7.61234 7.79161 8.03633 8.21484 8.88487 9.47214 10.98898 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.002294 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.322795 B =12203.272283 C =12755.796954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.317 6.317 12 C 0.145 3.855 13 C -0.209 4.209 14 C -0.081 4.081 15 C -0.148 4.148 16 C -0.053 4.053 17 C 0.100 3.900 18 N -0.673 5.673 19 C 0.051 3.949 20 H 0.060 0.940 21 C -0.158 4.158 22 C 0.049 3.951 23 O -0.376 6.376 24 C 0.055 3.945 25 C -0.156 4.156 26 H 0.263 0.737 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.349 0.651 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 -24.789 2.062 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.230 6.230 12 C 0.098 3.902 13 C -0.228 4.228 14 C -0.099 4.099 15 C -0.167 4.167 16 C -0.053 4.053 17 C -0.028 4.028 18 N -0.306 5.306 19 C -0.059 4.059 20 H 0.077 0.923 21 C -0.196 4.196 22 C -0.028 4.028 23 O -0.295 6.295 24 C -0.023 4.023 25 C -0.176 4.176 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.169 0.831 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.851 -25.019 2.222 25.279 hybrid contribution -0.438 1.530 -0.415 1.645 sum 2.413 -23.489 1.807 23.681 Atomic orbital electron populations 1.69990 1.06107 1.26872 1.49805 1.24998 0.94920 0.99429 0.94910 0.86425 0.79985 0.83214 0.77729 1.19627 1.20829 1.20820 1.21008 0.93092 0.90186 1.52101 0.92296 1.19131 0.94185 0.89061 0.98847 1.23331 0.97074 0.80790 0.99675 1.86166 1.36593 1.13229 1.87006 1.19143 0.90126 0.87448 0.93490 1.21407 0.93207 0.99896 1.08299 1.20905 0.99481 0.91931 0.97600 1.20761 0.93663 0.97420 1.04858 1.19347 0.93621 0.93156 0.99217 1.20917 0.98833 0.93532 0.89497 1.60616 1.52942 1.03635 1.13411 1.22966 0.94471 0.91027 0.97435 0.92252 1.23335 1.01055 0.98085 0.97165 1.23478 0.84497 0.94648 1.00202 1.88893 1.29912 1.72217 1.38468 1.23256 1.00968 0.91365 0.86696 1.20260 0.99936 0.89544 1.07833 0.92753 0.95413 0.95418 0.93126 0.93108 0.85244 0.86119 0.86341 0.94031 0.90056 0.83108 0.89237 0.90055 0.92264 0.88837 0.92653 0.88657 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.40 4.68 37.16 0.17 1.57 16 11 O -0.32 -6.49 10.14 -19.43 -0.20 -6.69 16 12 C 0.14 2.50 6.69 -39.21 -0.26 2.24 16 13 C -0.21 -3.26 9.04 -39.43 -0.36 -3.61 16 14 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 15 C -0.15 -1.80 9.70 -39.56 -0.38 -2.19 16 16 C -0.05 -0.65 5.39 -104.65 -0.56 -1.21 16 17 C 0.10 0.95 5.65 -4.97 -0.03 0.92 16 18 N -0.67 -6.16 6.17 -106.37 -0.66 -6.82 16 19 C 0.05 0.40 3.36 -66.18 -0.22 0.17 16 20 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 21 C -0.16 -1.08 6.63 -24.72 -0.16 -1.24 16 22 C 0.05 0.34 7.72 38.21 0.29 0.64 16 23 O -0.38 -3.83 11.52 -35.23 -0.41 -4.23 16 24 C 0.05 0.46 7.42 37.74 0.28 0.74 16 25 C -0.16 -2.29 9.64 -39.43 -0.38 -2.67 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 30 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 31 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.04 0.37 8.02 -51.93 -0.42 -0.05 16 35 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.35 3.24 8.42 -39.29 -0.33 2.91 16 37 H 0.09 0.68 8.01 -51.93 -0.42 0.26 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.87 7.93 -51.93 -0.41 0.46 16 43 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -30.81 356.85 -9.61 -40.42 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.88 Total: 0.35 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.57 Total: -18.94 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.08 Total: -32.48 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.60 Total: -10.92 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.81 -9.61 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178995742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.540 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds