Wall clock time and date at job start Tue Mar 31 2020 08:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.46994 * 180.02562 * 10 9 7 12 12 C 1.35898 * 117.00159 * 179.97438 * 11 10 9 13 13 C 1.38754 * 120.05306 * 0.02562 * 12 11 10 14 14 C 1.38125 * 119.94219 * 180.02562 * 13 12 11 15 15 C 1.38294 * 120.05607 * 0.02562 * 14 13 12 16 16 C 1.38245 * 120.11031 * 359.96089 * 15 14 13 17 17 C 1.50695 * 119.97063 * 180.02562 * 16 15 14 18 18 N 1.46904 * 109.47203 * 89.99969 * 17 16 15 19 19 C 1.46900 * 111.00154 * 180.02562 * 18 17 16 20 20 H 1.09002 * 110.74890 * 34.29332 * 19 18 17 21 21 C 1.55298 * 110.84961 * 157.76871 * 19 18 17 22 22 C 1.55211 * 100.82791 * 152.17742 * 21 19 18 23 23 O 1.43653 * 105.25828 * 323.81714 * 22 21 19 24 24 C 1.43243 * 109.96940 * 24.28622 * 23 22 21 25 25 C 1.38168 * 120.05442 * 359.76355 * 16 15 14 26 26 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 28 28 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 29 29 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 30 30 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 31 31 H 1.07993 * 120.03148 * 359.97438 * 13 12 11 32 32 H 1.08001 * 119.97351 * 179.97438 * 14 13 12 33 33 H 1.07997 * 119.94144 * 179.97438 * 15 14 13 34 34 H 1.09003 * 109.47513 * 210.00127 * 17 16 15 35 35 H 1.09006 * 109.47581 * 329.99718 * 17 16 15 36 36 H 1.00898 * 111.00172 * 56.04638 * 18 17 16 37 37 H 1.09001 * 111.13057 * 270.24360 * 21 19 18 38 38 H 1.09001 * 111.12322 * 34.40600 * 21 19 18 39 39 H 1.08997 * 110.37258 * 204.80085 * 22 21 19 40 40 H 1.08994 * 110.20933 * 82.75410 * 22 21 19 41 41 H 1.09002 * 109.82207 * 238.77234 * 24 23 22 42 42 H 1.08997 * 109.90614 * 117.84344 * 24 23 22 43 43 H 1.08003 * 120.02180 * 180.25654 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5309 -4.8996 -0.0001 12 6 2.2710 -6.0394 -0.0007 13 6 3.6567 -5.9680 -0.0002 14 6 4.4067 -7.1279 -0.0014 15 6 3.7777 -8.3595 -0.0036 16 6 2.3972 -8.4332 -0.0038 17 6 1.7151 -9.7769 -0.0056 18 7 1.4933 -10.2154 1.3788 19 6 0.8291 -11.5251 1.4162 20 1 1.1567 -12.1482 0.5840 21 6 1.0848 -12.2360 2.7731 22 6 -0.1883 -13.1167 2.8853 23 8 -1.2468 -12.3245 2.3237 24 6 -0.7062 -11.3629 1.4099 25 6 1.6425 -7.2759 0.0031 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 0.8902 28 1 0.6248 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8895 30 1 2.8719 -3.6043 0.8905 31 1 4.1484 -5.0066 0.0003 32 1 5.4853 -7.0730 -0.0014 33 1 4.3660 -9.2652 -0.0049 34 1 0.7570 -9.6974 -0.5195 35 1 2.3442 -10.5032 -0.5204 36 1 0.9665 -9.5276 1.8960 37 1 1.9866 -12.8468 2.7328 38 1 1.1362 -11.5162 3.5901 39 1 -0.4004 -13.3457 3.9296 40 1 -0.0610 -14.0369 2.3152 41 1 -0.9730 -10.3563 1.7319 42 1 -1.0932 -11.5451 0.4074 43 1 0.5640 -7.3341 0.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178995752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:45 Heat of formation + Delta-G solvation = -69.782007 kcal Electronic energy + Delta-G solvation = -21992.035081 eV Core-core repulsion = 18615.853146 eV Total energy + Delta-G solvation = -3376.181935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05098 -39.65644 -37.56735 -35.69774 -33.39948 -32.17168 -30.88577 -30.41588 -29.21814 -28.33535 -25.44145 -24.69309 -22.82554 -22.29343 -21.74425 -21.47061 -20.18588 -17.81002 -17.08287 -16.63740 -16.24663 -15.82224 -15.63565 -15.36295 -15.29790 -14.96399 -14.53871 -14.35147 -14.18611 -13.58824 -13.29954 -12.93225 -12.77378 -12.51357 -12.34202 -12.23365 -11.93408 -11.76761 -11.38940 -11.37861 -11.31601 -11.19934 -10.87099 -10.74759 -10.47531 -9.93895 -9.87853 -9.67898 -9.33284 -8.92647 -8.64760 -8.46291 -7.87015 -6.11824 -4.16696 1.38368 1.66069 3.27588 3.32003 3.33632 3.38464 3.73120 3.81941 4.12028 4.15544 4.39477 4.45035 4.61498 4.72645 4.79085 4.85469 4.94321 5.12726 5.24332 5.24466 5.30155 5.31669 5.34814 5.41466 5.45842 5.55522 5.61992 5.68565 5.77967 6.01086 6.03658 6.13873 6.50282 6.53560 6.57500 6.58399 6.68192 6.70465 6.94067 6.98810 7.48264 7.61815 7.79175 8.03597 8.21903 8.88619 9.47626 10.99690 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025329 B = 0.002398 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.204560 B =11672.262990 C =12471.773744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.316 6.316 12 C 0.145 3.855 13 C -0.209 4.209 14 C -0.081 4.081 15 C -0.148 4.148 16 C -0.054 4.054 17 C 0.101 3.899 18 N -0.670 5.670 19 C 0.055 3.945 20 H 0.094 0.906 21 C -0.144 4.144 22 C 0.048 3.952 23 O -0.383 6.383 24 C 0.021 3.979 25 C -0.156 4.156 26 H 0.264 0.736 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.349 0.651 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 -25.185 2.163 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.230 6.230 12 C 0.098 3.902 13 C -0.228 4.228 14 C -0.099 4.099 15 C -0.167 4.167 16 C -0.054 4.054 17 C -0.027 4.027 18 N -0.302 5.302 19 C -0.056 4.056 20 H 0.113 0.887 21 C -0.182 4.182 22 C -0.029 4.029 23 O -0.302 6.302 24 C -0.057 4.057 25 C -0.176 4.176 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.169 0.831 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.521 -25.301 2.273 25.802 hybrid contribution 0.031 1.394 -0.353 1.438 sum 4.552 -23.907 1.920 24.412 Atomic orbital electron populations 1.69965 1.06110 1.27113 1.49561 1.24996 0.94916 0.99397 0.94883 0.86539 0.79496 0.82561 0.78726 1.20093 1.21104 1.20068 1.20931 0.93007 0.90213 1.52427 0.92411 1.19118 0.94168 0.89014 0.98853 1.23336 0.97086 0.80789 0.99659 1.86171 1.36584 1.13229 1.86968 1.19144 0.90123 0.87469 0.93430 1.21411 0.93211 0.99902 1.08269 1.20907 0.99466 0.91937 0.97640 1.20755 0.93650 0.97398 1.04918 1.19347 0.93625 0.93151 0.99314 1.20908 0.98846 0.93623 0.89362 1.60537 1.52570 1.03590 1.13493 1.23202 0.91219 0.92246 0.98951 0.88744 1.23283 0.98323 0.99093 0.97548 1.23459 0.86286 0.94061 0.99096 1.88423 1.31777 1.49495 1.60489 1.23979 0.94475 0.93414 0.93872 1.20273 0.99985 0.89553 1.07750 0.92625 0.95391 0.95438 0.93136 0.93099 0.85236 0.86130 0.86356 0.93962 0.89928 0.83055 0.89477 0.89724 0.89572 0.92174 0.91072 0.91371 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.40 4.68 37.16 0.17 1.57 16 11 O -0.32 -6.48 10.14 -19.42 -0.20 -6.67 16 12 C 0.15 2.49 6.69 -39.22 -0.26 2.23 16 13 C -0.21 -3.22 9.04 -39.43 -0.36 -3.58 16 14 C -0.08 -1.04 10.04 -39.60 -0.40 -1.44 16 15 C -0.15 -1.76 9.70 -39.56 -0.38 -2.15 16 16 C -0.05 -0.65 5.39 -104.65 -0.56 -1.21 16 17 C 0.10 0.92 5.68 -4.98 -0.03 0.89 16 18 N -0.67 -5.89 6.37 -105.94 -0.67 -6.56 16 19 C 0.05 0.41 3.29 -65.77 -0.22 0.19 16 20 H 0.09 0.63 7.86 -51.93 -0.41 0.22 16 21 C -0.14 -0.98 6.87 -24.34 -0.17 -1.14 16 22 C 0.05 0.34 7.78 38.33 0.30 0.64 16 23 O -0.38 -3.90 11.36 -35.23 -0.40 -4.30 16 24 C 0.02 0.18 7.51 37.88 0.28 0.47 16 25 C -0.16 -2.27 9.64 -39.43 -0.38 -2.65 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 30 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 31 H 0.13 1.98 6.30 -52.49 -0.33 1.64 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.08 0.67 8.03 -51.93 -0.42 0.25 16 36 H 0.35 3.24 8.09 -39.29 -0.32 2.92 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.62 7.53 -51.93 -0.39 0.23 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -30.69 356.68 -9.59 -40.28 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.85 Total: 0.43 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -2.56 Total: -19.05 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.06 Total: -32.27 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.60 Total: -10.97 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.69 -9.59 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178995752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.502 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds