Wall clock time and date at job start Tue Mar 31 2020 08:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.46994 * 180.02562 * 10 9 7 12 12 C 1.35898 * 117.00159 * 179.97438 * 11 10 9 13 13 C 1.38754 * 120.05306 * 0.02562 * 12 11 10 14 14 C 1.38125 * 119.94219 * 180.02562 * 13 12 11 15 15 C 1.38294 * 120.05607 * 0.02562 * 14 13 12 16 16 C 1.38245 * 120.11031 * 359.96089 * 15 14 13 17 17 C 1.50695 * 119.97063 * 180.02562 * 16 15 14 18 18 N 1.46904 * 109.47203 * 89.99969 * 17 16 15 19 19 C 1.46900 * 111.00154 * 180.02562 * 18 17 16 20 20 H 1.09002 * 110.74890 * 34.29332 * 19 18 17 21 21 C 1.55298 * 110.84961 * 157.76871 * 19 18 17 22 22 C 1.55211 * 100.82791 * 152.17742 * 21 19 18 23 23 O 1.43653 * 105.25828 * 323.81714 * 22 21 19 24 24 C 1.43243 * 109.96940 * 24.28622 * 23 22 21 25 25 C 1.38168 * 120.05442 * 359.76355 * 16 15 14 26 26 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 28 28 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 29 29 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 30 30 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 31 31 H 1.07993 * 120.03148 * 359.97438 * 13 12 11 32 32 H 1.08001 * 119.97351 * 179.97438 * 14 13 12 33 33 H 1.07997 * 119.94144 * 179.97438 * 15 14 13 34 34 H 1.09003 * 109.47513 * 210.00127 * 17 16 15 35 35 H 1.09006 * 109.47581 * 329.99718 * 17 16 15 36 36 H 1.00898 * 111.00172 * 56.04638 * 18 17 16 37 37 H 1.09001 * 111.13057 * 270.24360 * 21 19 18 38 38 H 1.09001 * 111.12322 * 34.40600 * 21 19 18 39 39 H 1.08997 * 110.37258 * 204.80085 * 22 21 19 40 40 H 1.08994 * 110.20933 * 82.75410 * 22 21 19 41 41 H 1.09002 * 109.82207 * 238.77234 * 24 23 22 42 42 H 1.08997 * 109.90614 * 117.84344 * 24 23 22 43 43 H 1.08003 * 120.02180 * 180.25654 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5309 -4.8996 -0.0001 12 6 2.2710 -6.0394 -0.0007 13 6 3.6567 -5.9680 -0.0002 14 6 4.4067 -7.1279 -0.0014 15 6 3.7777 -8.3595 -0.0036 16 6 2.3972 -8.4332 -0.0038 17 6 1.7151 -9.7769 -0.0056 18 7 1.4933 -10.2154 1.3788 19 6 0.8291 -11.5251 1.4162 20 1 1.1567 -12.1482 0.5840 21 6 1.0848 -12.2360 2.7731 22 6 -0.1883 -13.1167 2.8853 23 8 -1.2468 -12.3245 2.3237 24 6 -0.7062 -11.3629 1.4099 25 6 1.6425 -7.2759 0.0031 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 0.8902 28 1 0.6248 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8895 30 1 2.8719 -3.6043 0.8905 31 1 4.1484 -5.0066 0.0003 32 1 5.4853 -7.0730 -0.0014 33 1 4.3660 -9.2652 -0.0049 34 1 0.7570 -9.6974 -0.5195 35 1 2.3442 -10.5032 -0.5204 36 1 0.9665 -9.5276 1.8960 37 1 1.9866 -12.8468 2.7328 38 1 1.1362 -11.5162 3.5901 39 1 -0.4004 -13.3457 3.9296 40 1 -0.0610 -14.0369 2.3152 41 1 -0.9730 -10.3563 1.7319 42 1 -1.0932 -11.5451 0.4074 43 1 0.5640 -7.3341 0.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178995752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:44 Heat of formation + Delta-G solvation = -89.427721 kcal Electronic energy + Delta-G solvation = -21992.886983 eV Core-core repulsion = 18615.853146 eV Total energy + Delta-G solvation = -3377.033838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.11986 -40.46679 -38.79478 -36.51958 -35.46802 -33.00248 -32.58727 -31.24315 -30.57538 -29.07970 -27.07574 -25.87823 -23.63857 -23.32842 -23.22165 -22.12594 -21.52377 -19.17953 -18.22557 -17.71590 -17.28221 -16.99987 -16.94605 -16.82807 -16.46849 -16.02749 -15.67230 -15.34722 -14.94934 -14.39262 -14.33437 -14.29711 -14.15772 -14.12459 -13.38213 -13.22938 -13.00182 -12.86225 -12.59920 -12.55568 -12.49894 -12.36613 -12.27786 -11.88088 -11.74110 -11.59444 -11.58461 -11.39760 -10.62798 -10.58010 -9.88938 -9.41800 -9.09479 -8.27839 -6.41827 0.32825 0.54351 1.40119 1.44183 1.52210 2.26091 2.50012 2.67202 2.90660 3.06425 3.36555 3.55752 3.79892 3.90022 3.91013 4.03933 4.15070 4.22203 4.24125 4.25156 4.32038 4.37916 4.45024 4.57186 4.64470 4.67848 4.72017 4.75335 4.80606 4.84556 5.03968 5.11173 5.14382 5.30064 5.42590 5.44811 5.52871 5.63502 5.67133 5.88399 5.97441 5.98100 6.06562 6.24363 6.56400 6.72750 7.28337 8.85090 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025329 B = 0.002398 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.204560 B =11672.262990 C =12471.773744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.086 3.914 11 O -0.343 6.343 12 C 0.105 3.895 13 C -0.222 4.222 14 C -0.080 4.080 15 C -0.138 4.138 16 C -0.047 4.047 17 C 0.104 3.896 18 N -0.672 5.672 19 C 0.060 3.940 20 H 0.110 0.890 21 C -0.139 4.139 22 C 0.043 3.957 23 O -0.411 6.411 24 C 0.019 3.981 25 C -0.165 4.165 26 H 0.267 0.733 27 H -0.002 1.002 28 H -0.002 1.002 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.344 0.656 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.013 -26.906 2.050 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.011 3.989 11 O -0.258 6.258 12 C 0.060 3.940 13 C -0.241 4.241 14 C -0.097 4.097 15 C -0.157 4.157 16 C -0.047 4.047 17 C -0.024 4.024 18 N -0.303 5.303 19 C -0.050 4.050 20 H 0.128 0.872 21 C -0.177 4.177 22 C -0.033 4.033 23 O -0.330 6.330 24 C -0.060 4.060 25 C -0.184 4.184 26 H 0.076 0.924 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.163 0.837 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.061 -27.059 2.161 28.048 hybrid contribution -0.776 1.737 -0.301 1.926 sum 6.285 -25.322 1.860 26.156 Atomic orbital electron populations 1.70115 1.08072 1.28322 1.50515 1.26063 0.95842 1.03746 0.94120 0.85328 0.78115 0.77114 0.79461 1.18793 1.20771 1.18791 1.21368 0.93827 0.91005 1.52296 0.91093 1.18960 0.94552 0.91442 0.95934 1.22842 0.95355 0.80255 1.00414 1.86077 1.37537 1.13813 1.88353 1.19500 0.91119 0.86845 0.96572 1.21510 0.92589 1.00982 1.09031 1.21261 1.00872 0.91256 0.96352 1.21188 0.93692 0.98244 1.02534 1.19663 0.93982 0.93524 0.97556 1.20941 0.99205 0.92358 0.89870 1.60571 1.52724 1.04000 1.13054 1.23228 0.90188 0.91711 0.99917 0.87222 1.23259 0.98804 0.98907 0.96733 1.23640 0.85711 0.94264 0.99705 1.88391 1.33516 1.50140 1.60997 1.24019 0.95432 0.92744 0.93787 1.20450 1.00339 0.89610 1.07992 0.92417 0.98388 0.98403 0.92252 0.92279 0.85683 0.83210 0.83175 0.93629 0.87802 0.83670 0.87845 0.90702 0.88875 0.90732 0.92072 0.90946 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.98 43.58 29.54 68.60 2.03 45.61 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -31.09 9.11 25.60 0.23 -30.86 16 8 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 9 C 0.03 1.57 5.34 29.85 0.16 1.73 16 10 C 0.09 3.81 4.68 71.98 0.34 4.14 16 11 O -0.34 -14.78 10.14 -92.40 -0.94 -15.72 16 12 C 0.10 3.67 6.69 22.51 0.15 3.82 16 13 C -0.22 -6.73 9.04 22.37 0.20 -6.53 16 14 C -0.08 -1.83 10.04 22.26 0.22 -1.61 16 15 C -0.14 -2.81 9.70 22.28 0.22 -2.60 16 16 C -0.05 -1.03 5.39 -19.88 -0.11 -1.14 16 17 C 0.10 1.63 5.68 85.55 0.49 2.12 16 18 N -0.67 -10.35 6.37 -489.07 -3.11 -13.46 16 19 C 0.06 0.76 3.29 46.17 0.15 0.91 16 20 H 0.11 1.09 7.86 -2.39 -0.02 1.07 16 21 C -0.14 -1.59 6.87 32.14 0.22 -1.36 16 22 C 0.04 0.54 7.78 72.74 0.57 1.10 16 23 O -0.41 -8.06 11.36 -148.98 -1.69 -9.75 16 24 C 0.02 0.30 7.51 72.45 0.54 0.84 16 25 C -0.16 -4.78 9.64 22.37 0.22 -4.56 16 26 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 27 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.06 2.48 7.66 -2.39 -0.02 2.46 16 30 H 0.06 2.48 7.66 -2.39 -0.02 2.46 16 31 H 0.13 3.80 6.30 -2.91 -0.02 3.78 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.05 0.70 8.09 -2.39 -0.02 0.68 16 35 H 0.10 1.24 8.03 -2.38 -0.02 1.22 16 36 H 0.34 6.03 8.09 -89.70 -0.73 5.31 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 1.08 7.53 -2.39 -0.02 1.06 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.12 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -68.39 356.68 0.90 -67.50 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.27 Total: 16.04 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 4.06 Total: -33.48 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -2.83 Total: -70.19 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -2.63 Total: -25.47 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.39 0.90 -67.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178995752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.931 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds