Wall clock time and date at job start Tue Mar 31 2020 08:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48505 * 109.46701 * 274.69105 * 3 2 1 5 5 H 1.48499 * 109.47242 * 34.69115 * 3 2 1 6 6 H 1.48500 * 109.47130 * 154.69460 * 3 2 1 7 7 C 1.39935 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99779 * 197.84522 * 7 2 1 9 9 C 1.41431 * 120.00286 * 17.85570 * 7 2 1 10 10 C 1.40794 * 120.17844 * 204.41145 * 9 7 2 11 11 C 1.37704 * 120.04069 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41250 * 359.97438 * 11 10 9 13 13 C 1.39877 * 120.35867 * 359.97438 * 12 11 10 14 14 C 1.47888 * 120.02563 * 180.02562 * 13 12 11 15 15 O 1.21550 * 119.99912 * 179.97438 * 14 13 12 16 16 N 1.34771 * 119.99899 * 359.97438 * 14 13 12 17 17 C 1.46511 * 120.00119 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47101 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46773 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46812 * 180.02562 * 19 18 17 21 21 C 1.53006 * 109.46856 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.46817 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.46732 * 179.97438 * 22 21 20 24 24 C 1.39034 * 119.94996 * 0.02562 * 13 12 11 25 25 H 0.97002 * 120.00058 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.97837 * 0.04262 * 10 9 7 27 27 H 1.07995 * 119.79331 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.82239 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00432 * 359.97438 * 16 14 13 30 30 H 1.08997 * 109.46735 * 300.00376 * 17 16 14 31 31 H 1.09004 * 109.46775 * 60.00019 * 17 16 14 32 32 H 1.08995 * 109.47234 * 299.99902 * 18 17 16 33 33 H 1.08996 * 109.47409 * 60.00190 * 18 17 16 34 34 H 1.08995 * 109.47252 * 300.00002 * 19 18 17 35 35 H 1.09004 * 109.46848 * 60.00324 * 19 18 17 36 36 H 1.09003 * 109.47100 * 299.99663 * 20 19 18 37 37 H 1.08992 * 109.46979 * 60.00156 * 20 19 18 38 38 H 1.09005 * 109.46412 * 300.00013 * 21 20 19 39 39 H 1.08996 * 109.47202 * 59.99716 * 21 20 19 40 40 H 1.08995 * 109.47234 * 299.99625 * 22 21 20 41 41 H 1.09004 * 109.47169 * 60.00132 * 22 21 20 42 42 H 0.96700 * 113.99491 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.20058 * 179.73120 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3906 2.1036 -1.3955 5 1 1.4928 2.6221 0.7968 6 1 3.5859 1.4136 0.5985 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3518 -2.4074 -0.3745 10 6 1.8266 -3.6500 0.0869 11 6 1.1860 -4.8123 -0.2805 12 6 0.0739 -4.7693 -1.1027 13 6 -0.4130 -3.5441 -1.5699 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0254 -2.4417 -2.8533 16 7 -2.2176 -4.6535 -2.7984 17 6 -3.3957 -4.6166 -3.6686 18 6 -3.8958 -6.0421 -3.9106 19 6 -5.1265 -6.0034 -4.8188 20 6 -5.6271 -7.4290 -5.0603 21 6 -6.8574 -7.3904 -5.9691 22 6 -7.3575 -8.8159 -6.2111 23 8 -8.5070 -8.7797 -7.0594 24 6 0.2223 -2.3614 -1.2084 25 1 -0.4850 0.8401 0.0004 26 1 2.6937 -3.6916 0.7294 27 1 1.5539 -5.7632 0.0754 28 1 -0.4210 -5.6868 -1.3852 29 1 -1.8799 -5.5034 -2.4752 30 1 -4.1816 -4.0314 -3.1913 31 1 -3.1294 -4.1587 -4.6213 32 1 -3.1096 -6.6269 -4.3881 33 1 -4.1619 -6.5004 -2.9581 34 1 -5.9125 -5.4188 -4.3410 35 1 -4.8608 -5.5450 -5.7714 36 1 -4.8412 -8.0140 -5.5381 37 1 -5.8928 -7.8870 -4.1077 38 1 -7.6434 -6.8052 -5.4917 39 1 -6.5912 -6.9324 -6.9217 40 1 -6.5714 -9.4006 -6.6886 41 1 -7.6236 -9.2742 -5.2586 42 1 -8.8786 -9.6507 -7.2553 43 1 -0.1476 -1.4135 -1.5704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182291557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:02 Heat of formation + Delta-G solvation = -102.900395 kcal Electronic energy + Delta-G solvation = -21663.325697 eV Core-core repulsion = 18285.707640 eV Total energy + Delta-G solvation = -3377.618057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.19867 -37.75675 -37.08599 -36.17104 -34.26481 -33.70493 -31.66383 -30.06595 -29.42644 -27.46946 -25.31548 -23.99586 -22.15190 -21.43324 -21.33770 -20.86120 -19.39701 -17.73110 -17.64774 -16.48906 -16.18056 -15.52328 -15.51681 -15.04605 -14.64558 -14.46535 -14.37976 -13.71306 -13.37479 -13.34067 -13.08219 -12.74903 -12.51262 -12.37799 -12.21557 -11.64927 -11.52834 -11.35234 -11.27089 -11.15680 -11.06919 -11.02058 -10.76675 -10.70964 -10.48942 -10.37489 -10.01135 -9.68630 -9.21816 -8.99814 -8.63062 -7.62564 -7.51946 -6.79794 -4.41202 2.22188 2.81700 3.08119 3.11753 3.15894 3.62148 3.85680 3.88669 3.92645 4.53493 4.61723 4.64500 4.81660 4.82115 4.89642 5.06323 5.15106 5.35219 5.42636 5.54403 5.55958 5.61560 5.66047 5.71162 5.83018 5.87594 6.00659 6.08173 6.13573 6.19531 6.27742 6.72184 6.89182 6.99413 7.02833 7.19870 7.21701 7.38473 7.70692 7.76709 7.93242 8.11167 8.20124 8.51247 8.80536 8.83925 8.97816 10.14900 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032079 B = 0.002264 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.647495 B =12365.136253 C =13126.814867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.219 4.219 13 C -0.128 4.128 14 C 0.562 3.438 15 O -0.547 6.547 16 N -0.739 5.739 17 C 0.120 3.880 18 C -0.131 4.131 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.122 4.122 22 C 0.074 3.926 23 O -0.577 6.577 24 C -0.093 4.093 25 H 0.284 0.716 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.379 0.621 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 -14.565 -8.383 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.239 4.239 13 C -0.131 4.131 14 C 0.353 3.647 15 O -0.425 6.425 16 N -0.392 5.392 17 C -0.004 4.004 18 C -0.168 4.168 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.004 4.004 23 O -0.383 6.383 24 C -0.113 4.113 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.234 0.766 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.225 0.775 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.706 -12.973 -8.632 18.905 hybrid contribution 0.356 -0.397 0.245 0.587 sum -10.349 -13.370 -8.387 18.873 Atomic orbital electron populations 1.69796 1.07588 1.29761 1.33551 1.25975 0.94775 1.01579 0.92321 0.86253 0.80453 0.80496 0.79288 1.19204 1.20195 1.18517 1.19605 0.98243 0.91041 1.39973 0.90038 1.17613 0.91199 0.92482 0.89168 1.21097 1.03507 0.92765 1.05826 1.20430 0.96054 0.96726 0.98421 1.20338 1.01339 0.94607 1.07594 1.19491 0.96561 0.95313 1.01774 1.18853 0.83328 0.82888 0.79631 1.90693 1.66329 1.29949 1.55556 1.45962 1.31091 1.09678 1.52512 1.21240 0.88050 0.96442 0.94631 1.21796 0.98000 0.96605 1.00442 1.21483 0.97273 0.96575 1.00050 1.21502 0.96787 0.97552 0.99537 1.21551 0.97904 0.95773 1.00756 1.22240 0.87241 0.97910 0.92987 1.86487 1.46424 1.34604 1.70755 1.21640 0.96463 0.96476 0.96728 0.90436 0.88613 0.88911 0.89259 0.76635 0.91925 0.91974 0.91311 0.91296 0.91448 0.91464 0.91709 0.91687 0.91155 0.91169 0.93680 0.93680 0.77467 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.92 10.95 55.55 0.61 -20.31 16 2 C 0.07 1.85 5.14 -17.35 -0.09 1.76 16 3 Si 0.91 18.90 29.60 -169.99 -5.03 13.87 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.15 9.05 -37.73 -0.34 -12.49 16 8 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 9 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 10 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 11 C -0.10 -2.10 10.01 -39.73 -0.40 -2.49 16 12 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 13 C -0.13 -3.07 5.87 -105.04 -0.62 -3.68 16 14 C 0.56 12.55 7.77 -12.31 -0.10 12.45 16 15 O -0.55 -14.05 16.33 5.32 0.09 -13.97 16 16 N -0.74 -12.33 5.51 -61.23 -0.34 -12.67 16 17 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 18 C -0.13 -1.25 5.33 -26.73 -0.14 -1.39 16 19 C -0.12 -0.96 5.21 -26.73 -0.14 -1.10 16 20 C -0.12 -0.81 5.21 -26.73 -0.14 -0.95 16 21 C -0.12 -0.93 5.58 -26.73 -0.15 -1.07 16 22 C 0.07 0.50 7.05 37.16 0.26 0.76 16 23 O -0.58 -4.54 13.66 -35.23 -0.48 -5.02 16 24 C -0.09 -2.51 8.23 -38.44 -0.32 -2.82 16 25 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 26 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 27 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.09 1.54 6.38 -52.48 -0.33 1.21 16 29 H 0.40 5.68 6.49 -40.82 -0.26 5.42 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.38 1.20 9.12 45.56 0.42 1.62 16 43 H 0.13 3.90 5.74 -52.49 -0.30 3.60 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -31.78 360.16 -9.22 -41.00 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.95 Total: 9.49 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -3.54 Total: -17.81 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.27 Total: -32.98 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.39 Total: -18.99 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.78 -9.22 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182291557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.902 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds