Wall clock time and date at job start Tue Mar 31 2020 08:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48505 * 109.46701 * 274.69105 * 3 2 1 5 5 H 1.48499 * 109.47242 * 34.69115 * 3 2 1 6 6 H 1.48500 * 109.47130 * 154.69460 * 3 2 1 7 7 C 1.39935 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99779 * 197.84522 * 7 2 1 9 9 C 1.41431 * 120.00286 * 17.85570 * 7 2 1 10 10 C 1.40794 * 120.17844 * 204.41145 * 9 7 2 11 11 C 1.37704 * 120.04069 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41250 * 359.97438 * 11 10 9 13 13 C 1.39877 * 120.35867 * 359.97438 * 12 11 10 14 14 C 1.47888 * 120.02563 * 180.02562 * 13 12 11 15 15 O 1.21550 * 119.99912 * 179.97438 * 14 13 12 16 16 N 1.34771 * 119.99899 * 359.97438 * 14 13 12 17 17 C 1.46511 * 120.00119 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47101 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46773 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46812 * 180.02562 * 19 18 17 21 21 C 1.53006 * 109.46856 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.46817 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.46732 * 179.97438 * 22 21 20 24 24 C 1.39034 * 119.94996 * 0.02562 * 13 12 11 25 25 H 0.97002 * 120.00058 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.97837 * 0.04262 * 10 9 7 27 27 H 1.07995 * 119.79331 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.82239 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00432 * 359.97438 * 16 14 13 30 30 H 1.08997 * 109.46735 * 300.00376 * 17 16 14 31 31 H 1.09004 * 109.46775 * 60.00019 * 17 16 14 32 32 H 1.08995 * 109.47234 * 299.99902 * 18 17 16 33 33 H 1.08996 * 109.47409 * 60.00190 * 18 17 16 34 34 H 1.08995 * 109.47252 * 300.00002 * 19 18 17 35 35 H 1.09004 * 109.46848 * 60.00324 * 19 18 17 36 36 H 1.09003 * 109.47100 * 299.99663 * 20 19 18 37 37 H 1.08992 * 109.46979 * 60.00156 * 20 19 18 38 38 H 1.09005 * 109.46412 * 300.00013 * 21 20 19 39 39 H 1.08996 * 109.47202 * 59.99716 * 21 20 19 40 40 H 1.08995 * 109.47234 * 299.99625 * 22 21 20 41 41 H 1.09004 * 109.47169 * 60.00132 * 22 21 20 42 42 H 0.96700 * 113.99491 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.20058 * 179.73120 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3906 2.1036 -1.3955 5 1 1.4928 2.6221 0.7968 6 1 3.5859 1.4136 0.5985 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3518 -2.4074 -0.3745 10 6 1.8266 -3.6500 0.0869 11 6 1.1860 -4.8123 -0.2805 12 6 0.0739 -4.7693 -1.1027 13 6 -0.4130 -3.5441 -1.5699 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0254 -2.4417 -2.8533 16 7 -2.2176 -4.6535 -2.7984 17 6 -3.3957 -4.6166 -3.6686 18 6 -3.8958 -6.0421 -3.9106 19 6 -5.1265 -6.0034 -4.8188 20 6 -5.6271 -7.4290 -5.0603 21 6 -6.8574 -7.3904 -5.9691 22 6 -7.3575 -8.8159 -6.2111 23 8 -8.5070 -8.7797 -7.0594 24 6 0.2223 -2.3614 -1.2084 25 1 -0.4850 0.8401 0.0004 26 1 2.6937 -3.6916 0.7294 27 1 1.5539 -5.7632 0.0754 28 1 -0.4210 -5.6868 -1.3852 29 1 -1.8799 -5.5034 -2.4752 30 1 -4.1816 -4.0314 -3.1913 31 1 -3.1294 -4.1587 -4.6213 32 1 -3.1096 -6.6269 -4.3881 33 1 -4.1619 -6.5004 -2.9581 34 1 -5.9125 -5.4188 -4.3410 35 1 -4.8608 -5.5450 -5.7714 36 1 -4.8412 -8.0140 -5.5381 37 1 -5.8928 -7.8870 -4.1077 38 1 -7.6434 -6.8052 -5.4917 39 1 -6.5912 -6.9324 -6.9217 40 1 -6.5714 -9.4006 -6.6886 41 1 -7.6236 -9.2742 -5.2586 42 1 -8.8786 -9.6507 -7.2553 43 1 -0.1476 -1.4135 -1.5704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182291557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:59 Heat of formation + Delta-G solvation = -124.580568 kcal Electronic energy + Delta-G solvation = -21664.265819 eV Core-core repulsion = 18285.707640 eV Total energy + Delta-G solvation = -3378.558179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90014 -38.88801 -38.28959 -37.13517 -35.68502 -35.30527 -32.81390 -31.66321 -31.25893 -28.43388 -27.16149 -25.08586 -23.55936 -22.79760 -22.27269 -21.96094 -21.04377 -19.47276 -18.23631 -17.90834 -17.16153 -17.15388 -16.72348 -16.44160 -16.38927 -15.52212 -15.43690 -15.11650 -14.94566 -14.42716 -14.39273 -14.26950 -13.96427 -13.49405 -13.21554 -13.10526 -12.94423 -12.81335 -12.53055 -12.26959 -12.16310 -12.04901 -11.97549 -11.87746 -11.69962 -11.49875 -11.41070 -11.09189 -10.86651 -10.77633 -10.14905 -9.47393 -9.38730 -8.67212 -6.38771 0.37609 1.00444 1.35773 1.47491 1.50804 2.09711 2.18688 2.26664 2.78255 3.31048 3.69673 3.87908 3.95173 4.04415 4.13012 4.16846 4.27441 4.43070 4.46451 4.49905 4.59971 4.65200 4.73125 4.82017 4.89034 4.93258 4.98672 5.04333 5.08761 5.14756 5.19555 5.26372 5.31185 5.43410 5.46405 5.49665 5.52998 5.86694 5.92425 6.05271 6.28467 6.51769 6.69796 6.87335 6.89836 6.94498 7.31667 8.29647 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032079 B = 0.002264 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.647495 B =12365.136253 C =13126.814867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.028 3.972 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.249 1.249 7 C -0.497 4.497 8 H 0.085 0.915 9 C 0.065 3.935 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.196 4.196 13 C -0.141 4.141 14 C 0.557 3.443 15 O -0.593 6.593 16 N -0.713 5.713 17 C 0.116 3.884 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.108 4.108 21 C -0.124 4.124 22 C 0.072 3.928 23 O -0.602 6.602 24 C -0.133 4.133 25 H 0.286 0.714 26 H 0.109 0.891 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.414 0.586 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.397 0.603 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 -17.739 -8.386 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.172 1.172 7 C -0.526 4.526 8 H 0.103 0.897 9 C 0.063 3.937 10 C -0.236 4.236 11 C -0.113 4.113 12 C -0.216 4.216 13 C -0.144 4.144 14 C 0.347 3.653 15 O -0.475 6.475 16 N -0.366 5.366 17 C -0.007 4.007 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.145 4.145 21 C -0.162 4.162 22 C -0.006 4.006 23 O -0.411 6.411 24 C -0.154 4.154 25 H 0.097 0.903 26 H 0.127 0.873 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.252 0.748 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.247 0.753 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.515 -16.235 -8.636 21.183 hybrid contribution 0.214 0.352 0.194 0.455 sum -10.301 -15.883 -8.443 20.729 Atomic orbital electron populations 1.69899 1.09293 1.30583 1.35385 1.26881 0.95416 1.05052 0.91348 0.85166 0.79408 0.75819 0.79182 1.19251 1.19350 1.17233 1.19881 0.98616 0.92201 1.41950 0.89724 1.17968 0.91793 0.94031 0.89910 1.21422 1.03912 0.92764 1.05534 1.20941 0.95330 0.97749 0.97320 1.20875 1.00492 0.95085 1.05158 1.19810 0.97000 0.95624 1.01944 1.18794 0.83294 0.83710 0.79531 1.90668 1.67515 1.32004 1.57319 1.45774 1.30865 1.08559 1.51403 1.21466 0.86468 0.99472 0.93319 1.21726 0.98699 0.93450 1.01563 1.21470 0.96632 0.97680 0.99549 1.21421 0.96665 0.96499 0.99937 1.21551 0.97950 0.96405 1.00282 1.22291 0.87350 0.97341 0.93574 1.86436 1.46973 1.36602 1.71070 1.21444 0.98377 0.96440 0.99126 0.90330 0.87278 0.84155 0.84316 0.74765 0.93118 0.92854 0.89763 0.89951 0.91969 0.91832 0.90652 0.90741 0.92257 0.92191 0.92478 0.92543 0.75349 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.87 10.95 21.82 0.24 -46.63 16 2 C 0.03 1.48 5.14 85.25 0.44 1.91 16 3 Si 0.98 40.17 29.60 68.60 2.03 42.20 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.50 -27.37 9.05 23.47 0.21 -27.16 16 8 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 9 C 0.07 3.58 5.57 -21.32 -0.12 3.47 16 10 C -0.22 -10.12 9.78 22.77 0.22 -9.90 16 11 C -0.10 -3.74 10.01 22.18 0.22 -3.52 16 12 C -0.20 -7.64 9.55 22.70 0.22 -7.42 16 13 C -0.14 -6.72 5.87 -20.13 -0.12 -6.84 16 14 C 0.56 24.95 7.77 86.80 0.67 25.63 16 15 O -0.59 -31.80 16.33 -3.87 -0.06 -31.86 16 16 N -0.71 -22.41 5.51 -465.92 -2.57 -24.98 16 17 C 0.12 3.05 5.67 86.38 0.49 3.54 16 18 C -0.12 -1.88 5.33 30.59 0.16 -1.72 16 19 C -0.12 -1.68 5.21 30.60 0.16 -1.52 16 20 C -0.11 -1.22 5.21 30.60 0.16 -1.06 16 21 C -0.12 -1.69 5.58 30.59 0.17 -1.52 16 22 C 0.07 0.82 7.05 71.98 0.51 1.33 16 23 O -0.60 -8.63 13.66 -148.98 -2.04 -10.66 16 24 C -0.13 -7.53 8.23 23.01 0.19 -7.34 16 25 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 26 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 27 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 28 H 0.14 3.97 6.38 -2.91 -0.02 3.95 16 29 H 0.41 10.15 6.49 -92.71 -0.60 9.54 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.40 1.91 9.12 -74.06 -0.68 1.23 16 43 H 0.10 6.12 5.74 -2.91 -0.02 6.10 16 Total: -1.00 -74.09 360.16 0.93 -73.16 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.26 Total: 30.88 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 3.59 Total: -32.11 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -2.33 Total: -71.61 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -2.10 Total: -42.52 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -74.09 0.93 -73.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182291557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.417 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds