Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47024 * 2 1 4 4 C 1.30991 * 120.00235 * 124.99905 * 3 2 1 5 5 C 1.50703 * 120.00235 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47336 * 124.99665 * 5 4 3 7 7 N 1.46502 * 109.46905 * 180.02562 * 6 5 4 8 8 C 1.40002 * 119.99446 * 180.02562 * 7 6 5 9 9 C 1.38641 * 120.10374 * 359.97438 * 8 7 6 10 10 C 1.38284 * 120.00818 * 180.02562 * 9 8 7 11 11 C 1.38275 * 120.20418 * 359.97438 * 10 9 8 12 12 C 1.38247 * 120.19312 * 0.02562 * 11 10 9 13 13 C 1.38724 * 119.99820 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.10569 * 179.97438 * 13 12 11 15 15 C 1.81406 * 102.99596 * 359.97438 * 14 13 12 16 16 C 1.50701 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00074 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47251 * 59.99956 * 20 18 16 22 22 H 1.48503 * 109.47464 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47248 * 299.99972 * 20 18 16 24 24 H 1.08992 * 109.47340 * 300.00291 * 1 2 3 25 25 H 1.09004 * 109.47017 * 60.00906 * 1 2 3 26 26 H 1.08999 * 109.47063 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47348 * 239.99908 * 2 1 3 28 28 H 1.08998 * 109.47310 * 119.99417 * 2 1 3 29 29 H 1.08002 * 119.99443 * 304.99725 * 3 2 1 30 30 H 1.08002 * 120.00322 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.46833 * 5.00056 * 5 4 3 32 32 H 1.09001 * 109.47491 * 245.00141 * 5 4 3 33 33 H 1.08997 * 109.46987 * 60.00116 * 6 5 4 34 34 H 1.08993 * 109.47021 * 300.00031 * 6 5 4 35 35 H 0.97001 * 120.00315 * 359.97438 * 7 6 5 36 36 H 1.07997 * 119.99368 * 359.97438 * 9 8 7 37 37 H 1.08004 * 119.90252 * 180.02562 * 10 9 8 38 38 H 1.07996 * 119.90390 * 179.74422 * 11 10 9 39 39 H 1.08007 * 120.00109 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47274 * 300.00167 * 15 14 13 41 41 H 1.09004 * 109.46798 * 60.00268 * 15 14 13 42 42 H 0.97006 * 119.99920 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8215 0.9292 5 6 3.3668 3.2422 0.9289 6 6 3.0716 3.8881 2.2842 7 7 3.5598 5.2693 2.2835 8 6 3.4026 6.0678 3.4227 9 6 2.7847 5.5537 4.5524 10 6 2.6299 6.3442 5.6763 11 6 3.0903 7.6481 5.6785 12 6 3.7077 8.1693 4.5567 13 6 3.8663 7.3838 3.4243 14 16 4.6522 8.0454 1.9927 15 6 5.0569 9.7406 2.4962 16 6 5.7456 10.4513 1.3597 17 1 5.9225 9.9347 0.4279 18 6 6.1507 11.7605 1.5098 19 7 5.9366 12.3890 2.6450 20 14 7.0050 12.6412 0.1013 21 1 6.1043 12.6774 -1.0788 22 1 7.3373 14.0286 0.5137 23 1 8.2531 11.9176 -0.2507 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.7065 2.1087 -0.7662 30 1 3.1896 1.1338 1.6957 31 1 2.8654 3.8049 0.1414 32 1 4.4421 3.2471 0.7506 33 1 3.5730 3.3254 3.0717 34 1 1.9964 3.8832 2.4624 35 1 3.9927 5.6304 1.4941 36 1 2.4235 4.5359 4.5542 37 1 2.1487 5.9418 6.5555 38 1 2.9632 8.2625 6.5575 39 1 4.0665 9.1880 4.5619 40 1 4.1406 10.2715 2.7543 41 1 5.7179 9.7142 3.3626 42 1 6.2220 13.3101 2.7507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185109722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = 13.657164 kcal Electronic energy + Delta-G solvation = -19408.207048 eV Core-core repulsion = 16478.396178 eV Total energy + Delta-G solvation = -2929.810871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -38.98041 -37.00570 -35.34818 -33.23352 -32.60789 -30.66118 -29.58563 -28.52672 -27.23262 -24.19560 -23.19318 -22.63896 -21.61187 -20.85395 -19.87224 -17.57037 -16.35335 -16.14745 -15.80357 -15.46759 -15.07718 -14.78323 -14.33593 -14.20778 -13.81788 -13.50324 -13.24234 -13.10845 -12.89868 -12.54329 -12.36261 -12.31377 -12.21427 -11.95961 -11.53038 -11.41459 -11.33260 -11.07457 -10.90355 -10.87339 -10.66859 -9.94976 -9.80659 -9.65988 -9.25394 -9.08983 -9.03020 -8.59782 -7.45017 -6.29925 -6.23644 -4.29009 1.76593 1.95197 2.00762 2.58588 3.25552 3.29059 3.32855 3.57435 3.83168 4.24176 4.31768 4.49932 4.71055 4.86535 4.95659 5.03936 5.10802 5.13616 5.15382 5.27019 5.42400 5.45354 5.48374 5.58668 5.67076 5.71548 5.82306 5.83614 5.89200 5.91203 6.10279 6.34015 6.42331 6.55903 6.57857 6.75939 7.00781 7.02250 7.05243 7.21354 7.63022 7.69140 7.93984 7.98558 8.71620 9.34422 10.87547 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016345 B = 0.003028 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.660001 B = 9245.938629 C =10758.706534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.104 4.104 6 C 0.135 3.865 7 N -0.747 5.747 8 C 0.223 3.777 9 C -0.189 4.189 10 C -0.094 4.094 11 C -0.160 4.160 12 C -0.089 4.089 13 C -0.136 4.136 14 S -0.181 6.181 15 C 0.080 3.920 16 C -0.518 4.518 17 H 0.067 0.933 18 C 0.068 3.932 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.404 0.596 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 -20.606 0.006 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.176 4.176 4 C -0.171 4.171 5 C -0.141 4.141 6 C 0.010 3.990 7 N -0.379 5.379 8 C 0.115 3.885 9 C -0.214 4.214 10 C -0.116 4.116 11 C -0.181 4.181 12 C -0.114 4.114 13 C -0.253 4.253 14 S 0.063 5.937 15 C -0.067 4.067 16 C -0.557 4.557 17 H 0.085 0.915 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.241 0.759 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.148 0.852 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.213 -21.066 -1.027 22.634 hybrid contribution 0.349 1.319 0.338 1.406 sum -7.863 -19.747 -0.689 21.266 Atomic orbital electron populations 1.21717 0.95153 1.01576 1.02167 1.20641 0.96177 0.94307 1.02215 1.22912 0.98189 0.97313 0.99177 1.22690 0.98701 0.96426 0.99269 1.20866 1.02156 0.93508 0.97592 1.21159 0.98691 0.82321 0.96840 1.44729 1.66917 1.11519 1.14772 1.17296 0.94958 0.88707 0.87491 1.20419 1.07333 1.00282 0.93368 1.20761 0.99592 0.94048 0.97168 1.20796 1.03035 0.95951 0.98359 1.21179 0.98444 0.99741 0.92047 1.21485 1.08060 0.95702 1.00050 1.84879 1.70867 1.19814 1.18103 1.21296 0.99902 0.85176 1.00340 1.20591 1.39237 0.96971 0.98948 0.91499 1.24949 0.95575 0.96827 0.96353 1.69937 1.46169 1.12142 1.24461 0.86393 0.79966 0.78413 0.81773 1.19874 1.20990 1.19877 0.92536 0.92591 0.92666 0.91228 0.91658 0.87300 0.87190 0.90823 0.90263 0.92543 0.92546 0.75947 0.86573 0.86752 0.86661 0.85239 0.93936 0.93932 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.10 -0.64 6.38 -27.88 -0.18 -0.82 16 3 C -0.16 -1.26 9.12 -36.02 -0.33 -1.59 16 4 C -0.15 -1.27 9.12 -36.02 -0.33 -1.60 16 5 C -0.10 -0.99 5.77 -27.88 -0.16 -1.15 16 6 C 0.13 1.51 4.90 -4.04 -0.02 1.49 16 7 N -0.75 -11.09 5.68 -58.45 -0.33 -11.42 16 8 C 0.22 3.84 6.66 -83.49 -0.56 3.28 16 9 C -0.19 -2.86 9.31 -39.42 -0.37 -3.23 16 10 C -0.09 -1.38 10.04 -39.55 -0.40 -1.77 16 11 C -0.16 -2.61 10.04 -39.56 -0.40 -3.01 16 12 C -0.09 -1.73 9.36 -39.40 -0.37 -2.09 16 13 C -0.14 -2.71 6.12 -38.92 -0.24 -2.95 16 14 S -0.18 -3.98 20.37 -107.50 -2.19 -6.17 16 15 C 0.08 2.06 4.09 36.01 0.15 2.21 16 16 C -0.52 -14.44 9.13 -34.44 -0.31 -14.75 16 17 H 0.07 1.84 7.71 -52.48 -0.40 1.44 16 18 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 19 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 20 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 29 H 0.11 0.87 7.84 -52.49 -0.41 0.46 16 30 H 0.11 0.83 7.84 -52.49 -0.41 0.42 16 31 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 34 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 35 H 0.40 6.26 7.02 -40.82 -0.29 5.97 16 36 H 0.12 1.46 6.74 -52.49 -0.35 1.11 16 37 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.13 2.69 5.88 -52.48 -0.31 2.38 16 40 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 41 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -29.11 360.75 -11.32 -40.43 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.71 Total: 5.23 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -3.24 Total: -24.77 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.40 Total: -36.29 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -2.19 Total: -6.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.11 -11.32 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185109722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.083 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds