Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47024 * 2 1 4 4 C 1.30991 * 120.00235 * 124.99905 * 3 2 1 5 5 C 1.50703 * 120.00235 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47336 * 124.99665 * 5 4 3 7 7 N 1.46502 * 109.46905 * 180.02562 * 6 5 4 8 8 C 1.40002 * 119.99446 * 180.02562 * 7 6 5 9 9 C 1.38641 * 120.10374 * 359.97438 * 8 7 6 10 10 C 1.38284 * 120.00818 * 180.02562 * 9 8 7 11 11 C 1.38275 * 120.20418 * 359.97438 * 10 9 8 12 12 C 1.38247 * 120.19312 * 0.02562 * 11 10 9 13 13 C 1.38724 * 119.99820 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.10569 * 179.97438 * 13 12 11 15 15 C 1.81406 * 102.99596 * 359.97438 * 14 13 12 16 16 C 1.50701 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00074 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47251 * 59.99956 * 20 18 16 22 22 H 1.48503 * 109.47464 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47248 * 299.99972 * 20 18 16 24 24 H 1.08992 * 109.47340 * 300.00291 * 1 2 3 25 25 H 1.09004 * 109.47017 * 60.00906 * 1 2 3 26 26 H 1.08999 * 109.47063 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47348 * 239.99908 * 2 1 3 28 28 H 1.08998 * 109.47310 * 119.99417 * 2 1 3 29 29 H 1.08002 * 119.99443 * 304.99725 * 3 2 1 30 30 H 1.08002 * 120.00322 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.46833 * 5.00056 * 5 4 3 32 32 H 1.09001 * 109.47491 * 245.00141 * 5 4 3 33 33 H 1.08997 * 109.46987 * 60.00116 * 6 5 4 34 34 H 1.08993 * 109.47021 * 300.00031 * 6 5 4 35 35 H 0.97001 * 120.00315 * 359.97438 * 7 6 5 36 36 H 1.07997 * 119.99368 * 359.97438 * 9 8 7 37 37 H 1.08004 * 119.90252 * 180.02562 * 10 9 8 38 38 H 1.07996 * 119.90390 * 179.74422 * 11 10 9 39 39 H 1.08007 * 120.00109 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47274 * 300.00167 * 15 14 13 41 41 H 1.09004 * 109.46798 * 60.00268 * 15 14 13 42 42 H 0.97006 * 119.99920 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8215 0.9292 5 6 3.3668 3.2422 0.9289 6 6 3.0716 3.8881 2.2842 7 7 3.5598 5.2693 2.2835 8 6 3.4026 6.0678 3.4227 9 6 2.7847 5.5537 4.5524 10 6 2.6299 6.3442 5.6763 11 6 3.0903 7.6481 5.6785 12 6 3.7077 8.1693 4.5567 13 6 3.8663 7.3838 3.4243 14 16 4.6522 8.0454 1.9927 15 6 5.0569 9.7406 2.4962 16 6 5.7456 10.4513 1.3597 17 1 5.9225 9.9347 0.4279 18 6 6.1507 11.7605 1.5098 19 7 5.9366 12.3890 2.6450 20 14 7.0050 12.6412 0.1013 21 1 6.1043 12.6774 -1.0788 22 1 7.3373 14.0286 0.5137 23 1 8.2531 11.9176 -0.2507 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.7065 2.1087 -0.7662 30 1 3.1896 1.1338 1.6957 31 1 2.8654 3.8049 0.1414 32 1 4.4421 3.2471 0.7506 33 1 3.5730 3.3254 3.0717 34 1 1.9964 3.8832 2.4624 35 1 3.9927 5.6304 1.4941 36 1 2.4235 4.5359 4.5542 37 1 2.1487 5.9418 6.5555 38 1 2.9632 8.2625 6.5575 39 1 4.0665 9.1880 4.5619 40 1 4.1406 10.2715 2.7543 41 1 5.7179 9.7142 3.3626 42 1 6.2220 13.3101 2.7507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185109722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = 0.098520 kcal Electronic energy + Delta-G solvation = -19408.794995 eV Core-core repulsion = 16478.396178 eV Total energy + Delta-G solvation = -2930.398817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25050 -37.81769 -36.27400 -35.34934 -33.42522 -32.03902 -30.75425 -30.40293 -28.21139 -25.50997 -24.82445 -23.71932 -22.61758 -22.00635 -20.51643 -19.13800 -18.21276 -17.49555 -17.15998 -16.56884 -16.26970 -15.82668 -15.47952 -15.15480 -14.89024 -14.86829 -14.65699 -14.60568 -14.22212 -14.05163 -13.93447 -13.12299 -13.07767 -12.98044 -12.77606 -12.74234 -12.60400 -12.30582 -12.21226 -11.83807 -11.70658 -11.64149 -11.58753 -10.98813 -10.90222 -10.82368 -10.41654 -9.88456 -8.82124 -8.36651 -7.86704 -6.51580 0.40974 0.68882 0.91411 1.31874 1.38673 1.42024 1.50925 1.88240 2.34082 2.56353 2.91748 2.97902 3.83732 3.97128 4.05864 4.14304 4.23644 4.24537 4.46808 4.48578 4.52184 4.53327 4.57337 4.69889 4.76799 4.85628 4.87128 4.87798 5.00800 5.03118 5.11557 5.13039 5.20442 5.26961 5.38848 5.47482 5.52090 5.69611 5.80693 5.81723 5.93252 5.97739 6.44021 6.55215 6.71755 7.16918 8.75418 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016345 B = 0.003028 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.660001 B = 9245.938629 C =10758.706534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.098 4.098 6 C 0.134 3.866 7 N -0.749 5.749 8 C 0.221 3.779 9 C -0.185 4.185 10 C -0.075 4.075 11 C -0.167 4.167 12 C -0.110 4.110 13 C -0.172 4.172 14 S -0.177 6.177 15 C 0.088 3.912 16 C -0.543 4.543 17 H 0.066 0.934 18 C 0.015 3.985 19 N -0.923 5.923 20 Si 0.980 3.020 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.265 1.265 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.136 0.864 39 H 0.099 0.901 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.285 -22.994 0.147 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.176 4.176 4 C -0.176 4.176 5 C -0.135 4.135 6 C 0.010 3.990 7 N -0.379 5.379 8 C 0.112 3.888 9 C -0.210 4.210 10 C -0.096 4.096 11 C -0.189 4.189 12 C -0.135 4.135 13 C -0.289 4.289 14 S 0.066 5.934 15 C -0.060 4.060 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.802 3.198 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.190 1.190 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.233 0.767 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.154 0.846 39 H 0.117 0.883 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.072 -23.495 -0.874 25.201 hybrid contribution 0.505 1.913 0.389 2.016 sum -8.568 -21.583 -0.485 23.226 Atomic orbital electron populations 1.21718 0.94860 1.02167 1.01865 1.20671 0.96403 0.93463 1.02820 1.23060 0.97712 0.98029 0.98766 1.22667 0.99144 0.95770 1.00028 1.20791 1.01987 0.94223 0.96531 1.21364 0.99058 0.80373 0.98164 1.44956 1.66420 1.12713 1.13816 1.17520 0.94508 0.87772 0.88981 1.20853 1.05986 1.01786 0.92350 1.21261 0.97330 0.92733 0.98294 1.21058 1.02640 0.97357 0.97831 1.21111 1.00006 0.98726 0.93637 1.21485 1.10805 0.97390 0.99198 1.84474 1.72197 1.16651 1.20055 1.20892 0.97889 0.88133 0.99079 1.20942 1.39957 0.97879 0.99364 0.91575 1.25953 0.95971 0.97528 0.99151 1.70061 1.46898 1.12605 1.26522 0.85282 0.78939 0.77259 0.78291 1.18958 1.20051 1.18961 0.92982 0.92757 0.91669 0.90630 0.91046 0.87697 0.86027 0.91449 0.90585 0.91268 0.91779 0.76731 0.83171 0.82396 0.84634 0.88320 0.96624 0.96605 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 71.98 0.71 -0.87 16 2 C -0.10 -1.09 6.38 29.85 0.19 -0.90 16 3 C -0.16 -2.23 9.12 25.66 0.23 -2.00 16 4 C -0.16 -2.31 9.12 25.66 0.23 -2.07 16 5 C -0.10 -1.72 5.77 29.85 0.17 -1.55 16 6 C 0.13 2.68 4.90 86.38 0.42 3.10 16 7 N -0.75 -21.41 5.68 -338.82 -1.93 -23.33 16 8 C 0.22 7.36 6.66 38.25 0.25 7.62 16 9 C -0.19 -4.98 9.31 22.38 0.21 -4.77 16 10 C -0.08 -1.93 10.04 22.29 0.22 -1.71 16 11 C -0.17 -5.28 10.04 22.28 0.22 -5.06 16 12 C -0.11 -4.45 9.36 22.39 0.21 -4.24 16 13 C -0.17 -7.02 6.12 22.70 0.14 -6.88 16 14 S -0.18 -8.14 20.37 -56.49 -1.15 -9.30 16 15 C 0.09 4.86 4.09 71.24 0.29 5.15 16 16 C -0.54 -31.52 9.13 25.60 0.23 -31.29 16 17 H 0.07 3.76 7.71 -2.91 -0.02 3.73 16 18 C 0.02 0.87 5.46 84.65 0.46 1.33 16 19 N -0.92 -55.03 13.29 21.44 0.28 -54.75 16 20 Si 0.98 43.91 29.54 68.60 2.03 45.93 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.73 7.79 -2.39 -0.02 0.71 16 29 H 0.11 1.55 7.84 -2.91 -0.02 1.53 16 30 H 0.12 1.50 7.84 -2.91 -0.02 1.48 16 31 H 0.07 1.26 7.79 -2.38 -0.02 1.24 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.25 7.95 -2.39 -0.02 1.23 16 34 H 0.06 1.22 7.95 -2.39 -0.02 1.20 16 35 H 0.40 12.28 7.02 -92.71 -0.65 11.63 16 36 H 0.15 3.03 6.74 -2.91 -0.02 3.01 16 37 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.10 4.50 5.88 -2.91 -0.02 4.48 16 40 H 0.02 0.92 7.75 -2.39 -0.02 0.90 16 41 H 0.02 0.93 7.75 -2.39 -0.02 0.91 16 42 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -65.50 360.75 3.79 -61.72 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.34 Total: 23.87 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 4.21 Total: -44.14 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.64 Total: -78.08 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.15 Total: -9.30 kcal Total: -65.50 3.79 -61.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185109722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.815 kcal (2) G-P(sol) polarization free energy of solvation -65.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds